G286852 (irf5,LOC107655585)


Basic Information

Item Value
gene id G286852
gene name irf5,LOC107655585
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 22486236 ~ 22489467 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU339722
GCAATGTTCACAATCTCTATCTGCAGTGCTCAcctcttcctcatcatcctcacccTCATCTCCATTAACTGGCAGATCGCACACCTCATAAATCTTGTATGGTTGCATCGGTGTCTCCTTGGTTCCATCATACTTCAGCATGAACTCCCGGCTCTTGTTGAGTGCGCATCGCAGGTTGGCCTTCCACTTGGCCGGATCAGGCTCATCTACACCCTCCTGGTACTTCCCCGTCTCCAGCGCCCAGGcCTTGAATATAGTGTTTTCCTCCTCCGGGGTGGGCAGATGGCGTGTGGCATGTCTCCAAGGTATCTGAAATAAGCGACACTCCTTGTTGAGCCAGTTGAGGCCAGGGTATTTCCCACTGTTCAC

Function

symbol description
irf5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in immune system process and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cytokine-mediated signaling pathway; defense response to virus; and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including gill; heart; immune system; liver; and muscle. Human ortholog(s) of this gene implicated in herpes simplex; inflammatory bowel disease 14; multiple sclerosis; rheumatoid arthritis; and systemic lupus erythematosus. Orthologous to human IRF5 (interferon regulatory factor 5).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU339722 True 369 TUCP 0.53 3 22486236 22489467

Neighbor

gene id symbol gene type direction distance location
lrrc4.1 lrrc4.1,LOC108279533 coding downstream 62482 22418105 ~ 22423754 (-)
plekha5 plekha5,LOC106609184 coding downstream 396817 21983016 ~ 22089419 (-)
aebp2 aebp2,LOC101464281 coding downstream 505914 21965132 ~ 21980322 (-)
pde3a pde3a coding downstream 554249 21860480 ~ 21931987 (-)
slco1c1 slco1c1,LOC108279430,LOC108435080,LOC107729145,LOC107656392,LOC107590530,LOC107658953 coding downstream 643801 21796905 ~ 21842435 (-)
si:dkey-159a18.1 LOC108279534 coding upstream 7922 22497389 ~ 22523790 (-)
LOC113544588 prr5 coding upstream 140580 22630047 ~ 22659391 (-)
pax4 pax4 coding upstream 181641 22671108 ~ 22683049 (-)
LOC113544635 LOC108279625,LOC108279584,LOC100305028,LOC108279586,LOC108279618,LOC108279585 coding upstream 326368 22815835 ~ 22817249 (-)
LOC113544620 LOC108279584,LOC108279625,LOC100305028,LOC108279618,LOC108279586,LOC108279585 coding upstream 353944 22843411 ~ 22844738 (-)
G286838 NA non-coding downstream 15227 22470411 ~ 22471009 (-)
G286810 NA non-coding downstream 32669 22335904 ~ 22453567 (-)
G286832 NA non-coding downstream 38807 22442050 ~ 22447429 (-)
G286740 NA non-coding downstream 251171 22189319 ~ 22235065 (-)
LOC113544512 NA non-coding downstream 337218 22148273 ~ 22149018 (-)
G286907 NA non-coding upstream 54464 22543931 ~ 22544398 (-)
G286904 NA non-coding upstream 139390 22628857 ~ 22629101 (-)
G287484 NA non-coding upstream 741427 23230894 ~ 23231145 (-)
G287493 NA non-coding upstream 845858 23335325 ~ 23335587 (-)
LOC113544587 NA other downstream 1015136 21460826 ~ 21471100 (-)
G285607 NA other downstream 2166186 20313067 ~ 20320050 (-)
rap1b rap1b,LOC106576640,LOC107695907 other downstream 2751004 19678283 ~ 19735232 (-)
LOC113532190 NA other downstream 3738403 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 4273843 18212322 ~ 18212393 (-)

Expression


Co-expression Network