G287493


Basic Information

Item Value
gene id G287493
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 23335325 ~ 23335587 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU340444
cattacttgttggagactttaatattcattttgataatccagatgaccctctgagaacagcagttgtgtccattcttgattcagtaggggttaatcagaatgtaatacgacccacccatagtggtggtcacactcttgatttaatactaacattcggattaaatatagaaaatatagtctcatttccacagtctgaagctatctcagatcattacctcatctcatttaaaatgtgtcttaatcataatatatgcaccttgcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU340444 True 263 lncRNA 0.35 1 23335325 23335587

Neighbor

gene id symbol gene type direction distance location
pphln1 LOC108279830 coding downstream 120911 23188249 ~ 23214414 (-)
cacna1c cacna1c,LOC108279829,LOC107732972,LOC107590584 coding downstream 153028 22900223 ~ 23182297 (-)
mrpl42 NA coding downstream 465527 22864496 ~ 22869798 (-)
LOC113544620 LOC108279584,LOC108279625,LOC100305028,LOC108279618,LOC108279586,LOC108279585 coding downstream 490587 22843411 ~ 22844738 (-)
LOC113544635 LOC108279625,LOC108279584,LOC100305028,LOC108279586,LOC108279618,LOC108279585 coding downstream 518076 22815835 ~ 22817249 (-)
G287484 NA non-coding downstream 104180 23230894 ~ 23231145 (-)
G286904 NA non-coding downstream 706224 22628857 ~ 22629101 (-)
G286907 NA non-coding downstream 790927 22543931 ~ 22544398 (-)
G286838 NA non-coding downstream 864316 22470411 ~ 22471009 (-)
G286810 NA non-coding downstream 881758 22335904 ~ 22453567 (-)
G286852 irf5,LOC107655585 other downstream 845858 22486236 ~ 22489467 (-)
LOC113544587 NA other downstream 1864225 21460826 ~ 21471100 (-)
G285607 NA other downstream 3015275 20313067 ~ 20320050 (-)
rap1b rap1b,LOC106576640,LOC107695907 other downstream 3600093 19678283 ~ 19735232 (-)
LOC113532190 NA other downstream 4587492 18698921 ~ 18747833 (-)

Expression


Co-expression Network