hcls1 (LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917)


Basic Information

Item Value
gene id hcls1
gene name LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 3738884 ~ 3755857 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026909953.2
atGTGAACGCACATCGTGCCTGAGCACAACTTCACCGACTGcaactttttctctctctctctctctctgtctctcttccagttttattatttgtttttattctattcacattttttcttcaacGCAACCACAACATGTGGAAGTCTGTGGTGGGTCACAATGTGAATGTGAAGGTACAGTCTGAGGGAGACGACTGGGAAACAGATCCAGATTTTGAGAATGATGTTTCGGAGCAGGAACAGAGGTGGGGATCAAAAACCATCGAAGGATCAGGACGCAAAGAGCACATCAGtgtggctGAGCTCAGACAGAAGGTGTCTAAGGAGCATGAAGTCGTGAAGAAGAAGGAGCAGGAAGAAGGTCCGAAAGCTTCGTATGGATACGGCGGCAAATTCGGCGTGGAGAAAGACAGGATGGATAAGGATGCAGTGGGGCACAGCTATGTAGCACAAGTGACTCAGCACTCGTCCCAAACAGACGCATCGAAGGGTTTTGGAGGGAAATTCGGCGTACAGAAGGACCGTGTAGACCAGTCGGCTTTGGGTTATGGGTATAAAGGAGAAGTTGAGCAACACGCCTCTCAGAAAGATTACTCTAAAGGCTTTGGAGGGAAGTTTGGAGTGCAGAAGGAGAGAGTGGATAAAGCGGCTCTGGGTTACGATTATAAAGGAGAAACTGAGAAACACGAGTCGCAGAAAGATTACTCTAAAGGCTTTGGAGGGAAGTTTGGAGTGCAGAAGGAGAGAGTGGATAAAGCGGCTCTGGGTTACGATTATAAAGGAGAAACTGAGAAACACGAGTCACAGAAAGATTACTCTAAAGGCTTTGGAGGGAAGTTTGGAGTGCAGAAGGAGAGAGTGGATAAAGCGGCTCTGGGTTACGATTATAAAGGAGAAACTGAGAAACACGAGTCACAGAAAGACTATGCTAAAGGTTTTGGAGGACGCTACGGTGTACAGGCCGACCGCATGGATAAGAGCGCAGCCTCCTTCAGTGAAATGGAGTCTCCCACATCGTCCTACGAGAAAACTCAAGCTCTCGAGGCCTcgagCTCAGGAGCCGGAAACCTGAAGTCCCGCTTTGAGAACATGGCAAAGACAGCGGAGGAGGAGAACAGGAAGCGAGCGGAGGAGGAGCGAGTGAGGAGACAAGCtcgagaaaagagagaaaaagaggaggcACAGAAGAGACAagaggtgaaaCGCTGTGAGTATGAGGAGGAGCAACGGAGGCCTCCTGTCATCCCTGAAGCTGTGAAACCGTCACAGGACTTTAGACCACTTCCTGAAATTCCCAGAGACTCTCCTGATCCTGTAACTCAGgtGGATGATGAGCAGCCTGATAATGACTACGACGAGCCGCCGTCACTGCCCCCCCGATCTGATGACCTGTTAGAGGAAGACAactctgctcctcctcctcttcctcacagaGCCATCGATGAAGCAGACTACGAGGACCTCGACTCCACTCGTTACACCGCGGAAGACGACTCTacgcctcctcctcttcctcacagaGACATCGATGAAGGAGAGTACGAGGACCTCGAATCAGCTCATTACACCGGGCAAGACAactctgctcctcctcctcttcctcacagaGACATCGATGAAGCAGACTACGAGGACCTCGACTCCGCTCATTACACCGCTGCTGAGAATGATTATGAAGATATAAACACCGGCAGCCAATCAGCCCGGGCTCTGTACGACTATCAGGGCGAGGCGGATGACGAGCTCTCCTTCGTgcctgatgacatcatcactaaCATCGAGATGGTGGACGAGGGCTGGTGGAAGGGAAGCTGTAACGGCCGCACAGGCCTTTTCCCAGCATCCTTTGTGCAGCTCATGTAGACAAAATCCAAACCACCACCCTGTATTTCTGCATGAATTACATCTTTCTCTCTTGATTTGTTCTGTTCCTGAccacagggttgccagatctgctgCAATGAAAAAAGAAGTACACCTGCTGGTTTTAATGCGTCGTGTATCTGATTTTAACCTCATACAGTCGGTCAGGTGTAGTGGAGTGTGTGATATGCAGATTAGACGTAAACAGGAAATTTACAGTccaaaactattattattattattattattagtgcttTATTGACTCCATCAACATTCTCAGAGGTGCAATAAAGTGCGTTCTGCGCACCAGGTGTGTGTCGATGTTACATTTTCATATCATGATACCTGCACAATATTTTATCGCGGTTTACGATGTTATCAAAtcagtgcattttatttttactatattttcgaaaatatatatcatttttggttttttaaacagaattacAAGATAGCCGGACAAATATAATGTCAACATATTGCCTTTTAACTGGGGTGCGCTTTGTTTTTAGGAGTTGAAACGCAGCATAAAGTAACTGTACGTGTTAAATATCATTATATTCTATAACTgcttattgtctgtgtggaaaaaaatctaGATTTGGCAACACAACCCGAACATCGCAGTGCAATAACTCACTGTGTGTAGTGCTGTTGTAGTAAAACAATCAGTGATGAAGCAGCGTTACTGTTACAGCCCCTAAAACAGCACAGCTCCATGTGATTTATTcttctcataccacagcaatccattacattttttatttattaagaacagtgcatcatacttttttatccatttatagttacagttcctgttctcacttacattacagcagcctCTGTTGAAATTAatagctgttgctatagaaacggtaatgtATCACAACGAGAGCTTTACTACTATCAGagcaggaaatgaatcaacaccttctgaccaatcagagtccaggaTTCAGCAACGTTGTGGTACGATGACCTCTTCAATATTTATCCATCTGTCTGGAAACATATCATGATTctgctacatttttaaaaccaatgaatgttttatttagtgtttataaaaaaaaaataataacccgGTTAAGAATCTATAAATTTTTGAATTCATGCTAATTACTCTCAGTCATTTGTAGCTGAGTGATGGACAACTCTGAATCAAAAAAGGGCGGAGCTTAGATCAAATtcgatcagccaatcacaaactcTGTGATATGACATCACAACAATGTGAGCTAGCATGCTAAGAGAAATTAACATTAGTGAGGCTAACTAGCACTAACTAGCATAGCTAATGTATTGTATAAGTAAATACTGTCATTTATGCTTCATGTAGAGCTATAAAGAAAGGCTAGTGATGATGTCATGTTAAATTTGTTTAACTTAAGCTCCACCCCCTTTTGACCCGTCACTCAGTAAAATCAGGGACATGTGGGTAAAGCTGTGCTTTAGAAgcagtgatggtgtgtgtgatatgtgatgGTTGATAGAAGAGCTATtgaagctgttttattttttaatgcaatatttcatgTTGCTAGCTCGGGGTCGTGTTTCAGATTAAAAGCATTGTGtacagtaaaaatgttttacatttatatcagAAAATAAACTGAAGCTTTATCAGCAAAA
>XM_026909954.2
tatGTGAACGCACATCGTGCCTGAGCACAACTTCACCGACTGcaactttttctctctctctctctctctgtctctcttccagttttattatttgtttttattctattcacattttttcttcaacGCAACCACAACATGTGGAAGTCTGTGGTGGGTCACAATGTGAATGTGAAGGTACAGTCTGAGGGAGACGACTGGGAAACAGATCCAGATTTTGAGAATGATGTTTCGGAGCAGGAACAGAGGTGGGGATCAAAAACCATCGAAGGATCAGGACGCAAAGAGCACATCAGtgtggctGAGCTCAGACAGAAGGTGTCTAAGGAGCATGAAGTCGTGAAGAAGAAGGAGCAGGAAGAAGGTCCGAAAGCTTCGTATGGATACGGCGGCAAATTCGGCGTGGAGAAAGACAGGATGGATAAGGATGCAGTGGGGCACAGCTATGTAGCACAAGTGACTCAGCACTCGTCCCAAACAGACGCATCGAAGGGTTTTGGAGGGAAATTCGGCGTACAGAAGGACCGTGTAGACCAGTCGGCTTTGGGTTATGGGTATAAAGGAGAAGTTGAGCAACACGCCTCTCAGAAAGATTACTCTAAAGGCTTTGGAGGGAAGTTTGGAGTGCAGAAGGAGAGAGTGGATAAAGCGGCTCTGGGTTACGATTATAAAGGAGAAACTGAGAAACACGAGTCACAGAAAGATTACTCTAAAGGCTTTGGAGGGAAGTTTGGAGTGCAGAAGGAGAGAGTGGATAAAGCGGCTCTGGGTTACGATTATAAAGGAGAAACTGAGAAACACGAGTCACAGAAAGACTATGCTAAAGGTTTTGGAGGACGCTACGGTGTACAGGCCGACCGCATGGATAAGAGCGCAGCCTCCTTCAGTGAAATGGAGTCTCCCACATCGTCCTACGAGAAAACTCAAGCTCTCGAGGCCTcgagCTCAGGAGCCGGAAACCTGAAGTCCCGCTTTGAGAACATGGCAAAGACAGCGGAGGAGGAGAACAGGAAGCGAGCGGAGGAGGAGCGAGTGAGGAGACAAGCtcgagaaaagagagaaaaagaggaggcACAGAAGAGACAagaggtgaaaCGCTGTGAGTATGAGGAGGAGCAACGGAGGCCTCCTGTCATCCCTGAAGCTGTGAAACCGTCACAGGACTTTAGACCACTTCCTGAAATTCCCAGAGACTCTCCTGATCCTGTAACTCAGgtGGATGATGAGCAGCCTGATAATGACTACGACGAGCCGCCGTCACTGCCCCCCCGATCTGATGACCTGTTAGAGGAAGACAactctgctcctcctcctcttcctcacagaGCCATCGATGAAGCAGACTACGAGGACCTCGACTCCACTCGTTACACCGCGGAAGACGACTCTacgcctcctcctcttcctcacagaGACATCGATGAAGGAGAGTACGAGGACCTCGAATCAGCTCATTACACCGGGCAAGACAactctgctcctcctcctcttcctcacagaGACATCGATGAAGCAGACTACGAGGACCTCGACTCCGCTCATTACACCGCTGCTGAGAATGATTATGAAGATATAAACACCGGCAGCCAATCAGCCCGGGCTCTGTACGACTATCAGGGCGAGGCGGATGACGAGCTCTCCTTCGTgcctgatgacatcatcactaaCATCGAGATGGTGGACGAGGGCTGGTGGAAGGGAAGCTGTAACGGCCGCACAGGCCTTTTCCCAGCATCCTTTGTGCAGCTCATGTAGACAAAATCCAAACCACCACCCTGTATTTCTGCATGAATTACATCTTTCTCTCTTGATTTGTTCTGTTCCTGAccacagggttgccagatctgctgCAATGAAAAAAGAAGTACACCTGCTGGTTTTAATGCGTCGTGTATCTGATTTTAACCTCATACAGTCGGTCAGGTGTAGTGGAGTGTGTGATATGCAGATTAGACGTAAACAGGAAATTTACAGTccaaaactattattattattattattattagtgcttTATTGACTCCATCAACATTCTCAGAGGTGCAATAAAGTGCGTTCTGCGCACCAGGTGTGTGTCGATGTTACATTTTCATATCATGATACCTGCACAATATTTTATCGCGGTTTACGATGTTATCAAAtcagtgcattttatttttactatattttcgaaaatatatatcatttttggttttttaaacagaattacAAGATAGCCGGACAAATATAATGTCAACATATTGCCTTTTAACTGGGGTGCGCTTTGTTTTTAGGAGTTGAAACGCAGCATAAAGTAACTGTACGTGTTAAATATCATTATATTCTATAACTgcttattgtctgtgtggaaaaaaatctaGATTTGGCAACACAACCCGAACATCGCAGTGCAATAACTCACTGTGTGTAGTGCTGTTGTAGTAAAACAATCAGTGATGAAGCAGCGTTACTGTTACAGCCCCTAAAACAGCACAGCTCCATGTGATTTATTcttctcataccacagcaatccattacattttttatttattaagaacagtgcatcatacttttttatccatttatagttacagttcctgttctcacttacattacagcagcctCTGTTGAAATTAatagctgttgctatagaaacggtaatgtATCACAACGAGAGCTTTACTACTATCAGagcaggaaatgaatcaacaccttctgaccaatcagagtccaggaTTCAGCAACGTTGTGGTACGATGACCTCTTCAATATTTATCCATCTGTCTGGAAACATATCATGATTctgctacatttttaaaaccaatgaatgttttatttagtgtttataaaaaaaaaataataacccgGTTAAGAATCTATAAATTTTTGAATTCATGCTAATTACTCTCAGTCATTTGTAGCTGAGTGATGGACAACTCTGAATCAAAAAAGGGCGGAGCTTAGATCAAATtcgatcagccaatcacaaactcTGTGATATGACATCACAACAATGTGAGCTAGCATGCTAAGAGAAATTAACATTAGTGAGGCTAACTAGCACTAACTAGCATAGCTAATGTATTGTATAAGTAAATACTGTCATTTATGCTTCATGTAGAGCTATAAAGAAAGGCTAGTGATGATGTCATGTTAAATTTGTTTAACTTAAGCTCCACCCCCTTTTGACCCGTCACTCAGTAAAATCAGGGACATGTGGGTAAAGCTGTGCTTTAGAAgcagtgatggtgtgtgtgatatgtgatgGTTGATAGAAGAGCTATtgaagctgttttattttttaatgcaatatttcatgTTGCTAGCTCGGGGTCGTGTTTCAGATTAAAAGCATTGTGtacagtaaaaatgttttacatttatatcagAAAATAAACTGAAGCTTTATCAGCAAAA

Function

NR:

description
PREDICTED: src substrate cortactin-like isoform X1

GO: NA

KEGG:

id description
K06106 CTTN, EMS1; cortactin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026909953.2 True 3500 mRNA 0.43 18 3738884 3755856
XM_026909954.2 False 3390 mRNA 0.43 17 3738884 3755857

Neighbor

gene id symbol gene type direction distance location
ppfia2 ppfia2,LOC107680027,LOC107694182 coding downstream 47198 3545076 ~ 3691686 (-)
pawr pawr coding downstream 491888 3205288 ~ 3246996 (-)
LOC117599441 LOC108261611 coding downstream 1060852 2672021 ~ 2678032 (-)
LOC117599440 LOC108261400,LOC108279477,LOC108262466,LOC108261384,LOC108261705,LOC108261423,LOC108261555,LOC108261611,LOC108261687 coding downstream 1069548 2668355 ~ 2669336 (-)
LOC117599439 LOC108261384,LOC108279477,LOC108261932,LOC108261705,LOC108261610,LOC108261515,LOC108261687,LOC108261554,LOC108262337 coding downstream 1071369 2664397 ~ 2667515 (-)
orc5 orc5 coding upstream 42484 3798341 ~ 3811616 (-)
kmt2e kmt2e coding upstream 101658 3857515 ~ 3906653 (-)
kdm7aa kdm7a coding upstream 163445 3919302 ~ 3945301 (-)
cd36 cd36 coding upstream 288849 4044706 ~ 4060514 (-)
psmc2 psmc2,LOC103382982 coding upstream 1028271 4784128 ~ 4792797 (-)
G276153 NA non-coding downstream 98101 3639967 ~ 3640783 (-)
LOC117599595 NA non-coding downstream 166958 3565035 ~ 3571926 (-)
G276049 NA non-coding downstream 323744 3414868 ~ 3415140 (-)
G276038 NA non-coding downstream 365866 3372624 ~ 3373018 (-)
LOC113523901 NA non-coding downstream 382451 3355454 ~ 3356433 (-)
G276342 lhfpl3 non-coding upstream 46536 3802393 ~ 3815365 (-)
G276353 NA non-coding upstream 56683 3812540 ~ 3813351 (-)
G276384 NA non-coding upstream 145405 3901262 ~ 3904931 (-)
G276387 NA non-coding upstream 157682 3913539 ~ 3913989 (-)
G276388 NA non-coding upstream 159471 3915328 ~ 3916117 (-)
G276340 NA other downstream 1807 3736130 ~ 3737077 (-)
G276075 NA other downstream 200141 3536997 ~ 3538743 (-)
lin7a lin7a other downstream 244868 3430190 ~ 3494016 (-)
rps16 rps16 other downstream 353961 3299257 ~ 3384923 (-)
ppp1r12a ppp1r12a,LOC107694147,LOC106609419 other downstream 403867 3226595 ~ 3335017 (-)
golgb1 LOC108279640 other upstream 3354 3759211 ~ 3829402 (-)
G276421 NA other upstream 326421 4082278 ~ 4091863 (-)
G276530 slc35e3,LOC107556774,LOC107710682 other upstream 542003 4297860 ~ 4300524 (-)
LOC113523868 NA other upstream 575403 4331260 ~ 4343545 (-)
LOC117599555 LOC108279645 other upstream 601682 4357539 ~ 4457121 (-)

Expression


Co-expression Network