psmc2 (psmc2,LOC103382982)


Basic Information

Item Value
gene id psmc2
gene name psmc2,LOC103382982
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4784128 ~ 4792797 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912198.2
GGAAGTGAACCGGAAGTGAAGCAGTACGCTAGCTAAAAACCTGCTGTGTAATCTTGCCTCCACAGCCACTGAAGAGaagcttaataaaaataaataaataaataaataaaaatgccgGATTATTTAGGAGCCGAGCAGCGCAAAATCAAAGAGGAGGATAAAGATGACGGGCCAATTCGagcTCTGGATGAAGGAGACATCGCTCTTCTAAAGACTTACGGCCAGAGCACGTATTCTCGTCAGATCAAGCAAGTAGAGGACGACATCCAGCAGCTCCTGAAGAAGATCAACGAGCTCACAGGCATTAAGGAGTCGGATACGGGGTTGGCTCCTCCTGCGCTATGGGACCTGGCTGCTGATAAACAGACGCTGCAGAGCGAACAGCCGCTGCAGGTGGCCAGGTGCACGAAGATAATCAACGCCGACTCGGAGGATCCGAAGTACATCATCAACGTGAAGCAGTTTGCCAAGTTCGTGGTGGATCTGAGCGATCAAGTCGCCCCGACCGACATCGAGGAAGGAATGAGAGTCGGCGTCGACAGAAACAAGTACCAGATCCACATTCCACTCCCTCCCAAAATCGACCCCACTGTGACCATGATGCAGGTGGAGGAGAAGCCAGACGTGACCTACAGCGATGTCGGAGGCTGTAAAGAGCAGATCGAGAAGCTCCGGGAAGTGGTGGAGACCCCTCTGCTGCATCCGGAGCGGTTCGTGAACCTGGGCATTGAGCCTCCAAAAGGCGTGCTGCTGTTCGGACCTCCGGGAACGGGGAAAACCCTGTGCGCTCGCGCCGTGGCCAATCGCACGGACGCCTGCTTCATCAGAGTCATCGGCTCTGAGCTGGTCCAGAAGTACGTGGGAGAGGGAGCTCGAATGGTTCGGGAGCTGTTCGAGATGGCCAGGACCAAGAAGGCTTGCCTCATCTTCTTCGATGAAATAGATGCTATTGGAGGAGCGCGTTTTGATGACGGAGCTGGAGGAGATAACGAGGTTCAGAGGACCATGCTGGAGCTCATCAACCAGCTGGACGGCTTCGACCCCAGAGGAAACATCAAGGTCCTGATGGCCACCAACCGACCCGACACTCTGGACCCGGCTCTCATGAGACCCGGTCGTCTGGACCGCAAGATCGAATTCAGCCTGCCTGACCTGGAGggtcGCACTCACATCTTCAAGATTCACGCTCGCTCCATGAGTGTAGAGAGAGACATTCGGTTCGAGCTGCTGGCCCGCCTCTGTCCCAACAGCACAGGCGCGGAGATCCGGAGCGTGTGCACGGAGGCGGGCATGTTCGCCATCAGAGCTCGCAGGAAAATCGCCACAGAGAAAGATTTCCTCGAAGCCGTGAACAAAGTCATCAAATCGTACGCCAAGTTCAGCGCCACCCCCCGATACATGACCTACAACTAAACCCCGCGTTCCCTTTCCCTTTCACGCTGTCCTTCTTTACAAGAGAAACAGTCAAGCTGTGTATTCATCATCGTttgattcttttcttttctttactgttataattaataaataaaaatgtaccaCCAGTA

Function

symbol description
psmc2 Predicted to enable TBP-class protein binding activity. Predicted to be involved in positive regulation of RNA polymerase II transcription preinitiation complex assembly. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome regulatory particle, base subcomplex. Predicted to be active in dendritic spine. Orthologous to human PSMC2 (proteasome 26S subunit, ATPase 2).

NR:

description
PREDICTED: 26S protease regulatory subunit 7

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K03061 PSMC2, RPT1; 26S proteasome regulatory subunit T1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912198.2 True 1544 mRNA 0.53 12 4784128 4792797

Neighbor

gene id symbol gene type direction distance location
cd36 cd36 coding downstream 723614 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 838827 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 877475 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 972512 3798341 ~ 3811616 (-)
hcls1 LOC108279643,LOC107095911,LOC105918344,LOC103358095,LOC102201149,LOC102292035,LOC101481917 coding downstream 1028271 3738884 ~ 3755857 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 104473 4897270 ~ 4917780 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 132919 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 161494 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 195684 4988481 ~ 5003791 (-)
sox5 sox5,LOC107725540,LOC107590035,LOC107587062 coding upstream 288015 5080812 ~ 5315907 (-)
LOC117599580 LOC108279645 non-coding downstream 197136 4586256 ~ 4586992 (-)
LOC117599581 LOC108279645 non-coding downstream 207090 4576470 ~ 4577038 (-)
G276557 LOC108279645,LOC108274854 non-coding downstream 226871 4414459 ~ 4557257 (-)
LOC117599444 LOC108279645 non-coding downstream 229033 4554619 ~ 4555095 (-)
LOC117599576 LOC108279645 non-coding downstream 238974 4544541 ~ 4545154 (-)
G276749 NA non-coding upstream 5862 4798659 ~ 4799157 (-)
G276755 prdm4 non-coding upstream 9110 4801907 ~ 4844371 (-)
G276761 NA non-coding upstream 24311 4817108 ~ 4876792 (-)
G276753 NA non-coding upstream 87621 4880418 ~ 4881008 (-)
LOC113531850 NA non-coding upstream 150752 4943549 ~ 4945278 (-)
G276650 LOC108279602 other downstream 45129 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 197032 4358625 ~ 4587096 (-)
LOC117599578 LOC108279645 other downstream 301563 4466061 ~ 4482565 (-)
LOC117599555 LOC108279645 other downstream 327007 4357539 ~ 4457121 (-)
LOC117599551 LOC108279645 other downstream 422186 4361332 ~ 4361942 (-)
tmpoa LOC108279628 other upstream 173435 4966232 ~ 4984315 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 1188341 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 1189495 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2629191 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 3174022 7966819 ~ 7970571 (-)

Expression


Co-expression Network