lmod2b (lmod2,lmod2b,LOC108411152,LOC101068860,LOC103382826)


Basic Information

Item Value
gene id lmod2b
gene name lmod2,lmod2b,LOC108411152,LOC101068860,LOC103382826
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10447665 ~ 10450902 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922568.2
CTTTTTGCGTATCTATCTGGTTGACTCCCCTCTCCGAAAAtagctgctgcatcacagaCCAGGGCTTTGTCATGTACCCCTCTGATCAAGTTCTTAAAGCTCCTCTATCTGCTCCAGCAGTACCTCCTGATATCAGTCACCCTCAATCTCGTGATCGTTAACACTACAATCTCAACTGAAAGGACAGGTTTACACTGTGGTCTTTACCTCACAAAAGGCCATGAGTTCCTTTGGCTATCGCCGGGAGCTGAGCAAGTACGAGGAGTTGGATGAGGATGAGCTGCTTGCCTCACTGACAGCCGAAGAGCTCCAGGAACTGGAAAAGGAGCTGGCTGATATTGATCCAGATGATAAAGTCCCCACTGGACTAAGGCAGAGGGACCAGACAGATAAAACCCCCACGGGCACATTTAGCCGAGAGGCTCTCCTAAAATACTGGGAGAAAGAGACACGCCAGATTCTCGAAAATGAAAGGATGGGATCTTCAAGCCCCCAGTTTTGCTGTGGATTCCAGGGtggtgaaaataatgaaaaagagaaTATGACAGAAAGCAATAGCGAGGACtcagaagaggagaaagaatCTGAGGATGAGAAGGAAAAGGATGGTTGtatagatgatgatgaagaagataATGAAGAGAAGGGTGAACTAGAGGAGCCAATtactgaggaggaggaagaggaggaggaggaggaggaagaagaagaagaggaggaggaggaagaagaagaggaggaggaggaagaagaagaagaagaaaaagagattgTCAGAAAGCAGGAAAACAACCTCCAAAAGGAGAGTGTTCTGGAGAAATGTGTTCCTCTGCATAACATGTACAACGGTCACTCAAGCCTCAAGCCAGAAAATTCTGTGAGGAGAAATTCACCACAGGAGTCAAATCAGTTGTCAGGAAACCCCACTGTCCTAGATGAGGCTCTGGAAAAGATCCTCCGTGATGACCCTGACACCATTGAAGTCAATCTCAACAATATTGATAACATTTCCCAGGAAAACTTGATCCGCTTCACAGAAGCCCTGCACTCCAACACCCATGTGCAGGCTTTTAGTTTGGCGAACACTCATGCTGATGACCCAGTAGCCTTTGCAATTGCCAAAATGCTGAAGGAGAACTGCCACATTACTAAGCTAAATATTGAGTCTAACTACATCACAGGAAAGGGTATCCTAGCAATAGTGCAAGTACTTACACACAATAGCACTCTAACAGAGCTACGCTTCCACAACCAGCGCCATATCTGCGGAGGTCAGGTAGAGATGGAGATGGTAAAACTGTTGAGAGAGAACACCACCCTGCTCAAGCTTGGCTACCAGTTTGACCTGCCTGGCCCTCGAATGAGCATGACTGGCATCCTCACACGCAATCAGGATCTTCAAAGGCAGAAGAGAATGCAAGAACTACGTCAGCAGCAAGGAGGTGCCTCAACTCCAATTAACCCACGCACAAGTGCGCTACAGAAGAGCACACCAACAGCTTCTCCATATGGGTCTCCTCGGAGTTCACCGTGGTCCTCTCCAAAGCTGCCACGTAATGATGTCATAAAAAGGAATCCTCAACCAAGTCttccaccacctcctcctcctcctccaccacctccaccacctcctcctcctccacctccacctcccccCAAACCCCAGAGCATTACTGTAAAAAGAGGTCCAACCAGAAAGATCGCAGAGGTGATCAAACTTCAAGAAGCAAGTGCCAAAAAGCAACAGGTTCAGAGTAAAGGCAAGTGTAAGTCcaaaaaagggaagaaagagGTTCCCAAGGAAAACGGGACCGAAAACATCCTTAAGGAGCTGAAAAATGCACTGAAGCCCATCGCAGACAGAGACATCTCCAGACCCTCTACGCCAATGCGGTCGGCTCATGACGAACTCATGGCCGCTATCCGAGCAAGCAGTATCAAATCCCTGAAACGGGTGGAAGTTCCCCAGTATCTTCGGTAATGGGGTCAAATACTATGTaccaagaaagaaaggatggcCACACACATCATCTCCAAAGATCCTTTCCATAGCACTATGTTTATACGAAATACTCTGTAAAGAATCTGCATAGTTAGTGCAAACTTGTTCACTTCATGTTATGAATACCTTCCTACTGAAA
>XM_026922569.2
TCACATTCTTTTTGCGTATCTATCTGGTTGACTCCCCTCTCCGAAAAtagctgctgcatcacagaCCAGGGCTTTGTCATGTACCCCTCTGATCAAGTTCTTAAAGCTCCTCTATCTGCTCCAGCAGTACCTCCTGATATCAGTCACCCTCAATCTCGTGATCGTTAACACTACAATCTCAACTGAAAGGACAGGTTTACACTGTGGTCTTTACCTCACAAAAGGCCATGAGTTCCTTTGGCTATCGCCGGGAGCTGAGCAAGTACGAGGAGTTGGATGAGGATGAGCTGCTTGCCTCACTGACAGCCGAAGAGCTCCAGGAACTGGAAAAGGAGCTGGCTGATATTGATCCAGATGATAAAGTCCCCACTGGACTAAGGCAGAGGGACCAGACAGATAAAACCCCCACGGGCACATTTAGCCGAGAGGCTCTCCTAAAATACTGGGAGAAAGAGACACGCCAGATTCTCGAAAATGAAAGGATGGGATCTTCAAGCCCCCAGGGtggtgaaaataatgaaaaagagaaTATGACAGAAAGCAATAGCGAGGACtcagaagaggagaaagaatCTGAGGATGAGAAGGAAAAGGATGGTTGtatagatgatgatgaagaagataATGAAGAGAAGGGTGAACTAGAGGAGCCAATtactgaggaggaggaagaggaggaggaggaggaggaagaagaagaagaggaggaggaggaagaagaagaggaggaggaggaagaagaagaagaagaaaaagagattgTCAGAAAGCAGGAAAACAACCTCCAAAAGGAGAGTGTTCTGGAGAAATGTGTTCCTCTGCATAACATGTACAACGGTCACTCAAGCCTCAAGCCAGAAAATTCTGTGAGGAGAAATTCACCACAGGAGTCAAATCAGTTGTCAGGAAACCCCACTGTCCTAGATGAGGCTCTGGAAAAGATCCTCCGTGATGACCCTGACACCATTGAAGTCAATCTCAACAATATTGATAACATTTCCCAGGAAAACTTGATCCGCTTCACAGAAGCCCTGCACTCCAACACCCATGTGCAGGCTTTTAGTTTGGCGAACACTCATGCTGATGACCCAGTAGCCTTTGCAATTGCCAAAATGCTGAAGGAGAACTGCCACATTACTAAGCTAAATATTGAGTCTAACTACATCACAGGAAAGGGTATCCTAGCAATAGTGCAAGTACTTACACACAATAGCACTCTAACAGAGCTACGCTTCCACAACCAGCGCCATATCTGCGGAGGTCAGGTAGAGATGGAGATGGTAAAACTGTTGAGAGAGAACACCACCCTGCTCAAGCTTGGCTACCAGTTTGACCTGCCTGGCCCTCGAATGAGCATGACTGGCATCCTCACACGCAATCAGGATCTTCAAAGGCAGAAGAGAATGCAAGAACTACGTCAGCAGCAAGGAGGTGCCTCAACTCCAATTAACCCACGCACAAGTGCGCTACAGAAGAGCACACCAACAGCTTCTCCATATGGGTCTCCTCGGAGTTCACCGTGGTCCTCTCCAAAGCTGCCACGTAATGATGTCATAAAAAGGAATCCTCAACCAAGTCttccaccacctcctcctcctcctccaccacctccaccacctcctcctcctccacctccacctcccccCAAACCCCAGAGCATTACTGTAAAAAGAGGTCCAACCAGAAAGATCGCAGAGGTGATCAAACTTCAAGAAGCAAGTGCCAAAAAGCAACAGGTTCAGAGTAAAGGCAAGTGTAAGTCcaaaaaagggaagaaagagGTTCCCAAGGAAAACGGGACCGAAAACATCCTTAAGGAGCTGAAAAATGCACTGAAGCCCATCGCAGACAGAGACATCTCCAGACCCTCTACGCCAATGCGGTCGGCTCATGACGAACTCATGGCCGCTATCCGAGCAAGCAGTATCAAATCCCTGAAACGGGTGGAAGTTCCCCAGTATCTTCGGTAATGGGGTCAAATACTATGTaccaagaaagaaaggatggcCACACACATCATCTCCAAAGATCCTTTCCATAGCACTATGTTTATACGAAATACTCTGTAAAGAATCTGCATAGTTAGTGCAAACTTGTTCACTTCATGTTATGAATACCTTCCTACTGAAA

Function

symbol description
lmod2b Predicted to enable tropomyosin binding activity. Predicted to be involved in actin filament organization; muscle contraction; and myofibril assembly. Predicted to act upstream of or within pointed-end actin filament capping. Predicted to be active in striated muscle thin filament. Orthologous to human LMOD2 (leiomodin 2).
lmod2 Enables actin monomer binding activity and tropomyosin binding activity. Involved in actin nucleation and sarcomere organization. Located in actin filament and sarcomere. Colocalizes with M band.

NR:

description
PREDICTED: leiomodin-2 isoform X2

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005523 tropomyosin binding molecular_function

KEGG:

id description
K22030 LMOD; leiomodin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922568.2 True 2141 mRNA 0.47 3 10447665 10450895
XM_026922569.2 False 2130 mRNA 0.47 3 10447665 10450902

Neighbor

gene id symbol gene type direction distance location
pik3cg pik3cg,LOC107656384,LOC107590535,LOC107658948,LOC107583938,LOC107705338 coding downstream 431875 10007198 ~ 10015790 (-)
ccdc59 ccdc59 coding downstream 549713 9895085 ~ 9897952 (-)
tspan11 tspan11,LOC108279944,LOC107720401,LOC107593980,LOC107560736,LOC107694254,LOC108436010,LOC107690651 coding downstream 593336 9755585 ~ 9854329 (-)
sema3aa LOC108280003,LOC108436009,LOC103023715,LOC107562295,LOC107757236,LOC107560735,LOC107694310 coding downstream 704987 9707450 ~ 9742678 (-)
pcloa pclo,pcloa coding downstream 749469 9629331 ~ 9698196 (-)
asb15b LOC108280075 coding upstream 676 10451578 ~ 10461046 (-)
ptprz1b LOC108280061,LOC108435099 coding upstream 19634 10470536 ~ 10512149 (-)
slc13a4 slc13a4,LOC107656439 coding upstream 81879 10532781 ~ 10548341 (-)
LOC113532144 best3 coding upstream 168016 10618918 ~ 10629763 (-)
ptprb ptprb,LOC107562139 coding upstream 333426 10784328 ~ 10828385 (-)
G280389 NA non-coding downstream 11819 10430631 ~ 10435846 (-)
G280233 NA non-coding downstream 359545 10087849 ~ 10088120 (-)
G280228 NA non-coding downstream 369309 10078086 ~ 10078356 (-)
G280002 NA non-coding downstream 442853 10004341 ~ 10004812 (-)
G279967 NA non-coding downstream 500129 9947331 ~ 9947536 (-)
G280398 NA non-coding upstream 13052 10463954 ~ 10465630 (-)
G280360 NA non-coding upstream 17784 10468686 ~ 10470375 (-)
G280527 NA non-coding upstream 325861 10776763 ~ 10777897 (-)
G280615 NA non-coding upstream 332459 10783361 ~ 10784293 (-)
G280640 NA non-coding upstream 455271 10906173 ~ 10908630 (-)
LOC113532274 NA other downstream 151467 10255972 ~ 10296198 (-)
cracr2ab LOC108280118 other downstream 555279 9878481 ~ 9892386 (-)
G279415 NA other downstream 1239102 9207351 ~ 9208563 (-)
G278912 NA other downstream 2227985 8218561 ~ 8219680 (-)
G278634 NA other downstream 2379588 8053088 ~ 8068077 (-)
si:ch211-51e12.7 LOC108280090 other upstream 544203 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 628266 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 788033 11238935 ~ 11259412 (-)
G281074 rad51ap1 other upstream 1135402 11586304 ~ 11588024 (-)
G281092 mansc1 other upstream 1206988 11657890 ~ 11660327 (-)

Expression


Co-expression Network