tmem178b (tmem178b,LOC107725619,LOC107694293)


Basic Information

Item Value
gene id tmem178b
gene name tmem178b,LOC107725619,LOC107694293
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 20792473 ~ 20894630 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922583.2
AAGCCTCTGCAGGTGGCGCTGCGCCTTTAAGAAGGTGCTTTAATAAACAATGAGCGTCTCCGGCTGGCAGCATGACATCACCGCTGGATTTGGAGACAGAGACGCGCACCGAGAACGCTGAGGCCACATTAACCGAATCTGCACCATCCAAGTAAATACTGGCATCCTTATTTCTCGCACTTTCTCCAGGTGGCTTTGGATAACAGGTGAAGAATATAGGCTATGTTCCGTCCAGAAGTGGCCACAGACCGAGAGGGATTTAGCTCCATGGCCTGGATTTAGGACTGTACAGCTTCAGCATCATTATTATCTGACGgtactgGATGTCCCCTCCCCCACCACCCCGTTTACGGATGGTCCGGTTATAGGCGTCTTTTCTTCCATACAAGATAAACATAAAAGCGAATTCCGGTGCACGGACGGATATTTCTCACGTCCCGGCGTTTCTCGAGGTCTGATTGCGTTGCCTTGTGTGTCGCGAGGTGATGCACACAGCTGAGCACGGGGATTCGCGCGCGCACGCCAACCGAAGCTGTTCGTGGTGCTGAAGGCGGCTGAGAGAGCGCGCGACGAAGCTGAGAGGAGCATGGCCGCCGGCAAGCTGCTGCTCTACGCcggtctctctctgtccctgtgcGCGCTAGGCATGCTGGCCGTGGCCGTGTGCTCCGACCACTGGTACGAGACGGACGCCAGGCGCTATCGCGAGCGGTGCCGAAGCTTCTCGAGCCGCCGCAAGGACCCGGGTTTCATCTACATCCCCAACAACAGCCTGCCGCTGCGCGCCAGCCGCTCGCGCCTCGACCGCTGGGAAGGCAAGCTGCTCGTGACGCGCAACCGACGGCAGCTTTTCGCCATGAGCGCCGCTGACGAGTGCAGCCGCCAGTACAACTCCACCAACATGGGCCTGTGGAGCAAATGCCACCGCCTCGGGTTCGACCAGGACATCGAGGACCTCATTCGCAAAGGTTCCATTGCACGATGCTCCTATATCAAGTACCACTACTCCTCAGCCACGATACCCAAGAATCTGTCCTACAACATCACCAAGACCATCCGGCAAGATGAGTGGCACTCCTTGCACCTGCGCAGGATGACAGCGGGCTTCATGGGCATGGCTGTGGCCATCATCCTTTTCGGCTGGATCATTGGCATGCTCGGCTGCTGCTGGGACCGAGGCCTCATGCAGTATGTGGCGGGTCTGCTCTTCCTCATGGGCGGTACCTTCTGCATCATCTCGTTGTGCACCTGCGTAGCGGGAATTAATTTTGAGCTTTCCCGCTATCCGCGCTACCTGTACGGCCTCCCAGACGACATCAGCCACGGTTACGGCTGGTCCATGTTCTGTGCCTGGGGTGGCCTGGGCCTGTCGCTCATCGCCGGCTTCTTCTGCACGCTGGCTCCCTCCGTTCAGCCGATCCCACGCTCCACCTGCCCCAAATCCCGGCAAGAAAATGGCACAGTGTGTTAAGCGGAGGCTTCCGACAAAGCCACCGTGCAGCCACGTGCTGAGTggaaaacatataaacaataaGACGACTGATTATCAAAACCATACATTTGTTCCCGAGTCATTTCTGATCTCACCAATCAGACGCCATTTTCTTGTGACCTTGCAAATAAGTATCCTGATCGttccatgacaaaaaaaatagatgaaagCCAGTATGTTACTGAGATACTGAAATGGAGATACTACACAGGAACTTTCAGGATTATCTCTCTTTCCCGTAACAACACTGGGAAGGGCAGCAGGAAACGGCGACTAATGGAGACTTGTACATCAGTATGTGAAAATACAGCAGCATGAAACTTGAAAGGTGTGTAAGAGTTTCTAGCTGTTCTTAGTTGTCTCTTTATTGCTAAATTGGTGCTTTGGGGTTGAAAAAAATCCCAATATAGtatatgtgttttgtgtttgaagAGCTACTGAACTGGAGACAGTGCCAATCTATATCTAAGGAGGGTTACAGTGCAAATGACAGTAGAAACATTTTGGAGCAATGGATTCTGTGATACAAATAGACCAATATAGTTATAGTGAACTGGAGCAGCACTGGATACTGGACACAACCACAAGCCCTTTAGTCTGCAGACAAGAAATCGGTACTTTAAGAGAACATTTGGAGGAATGGGACACATCTGCTGGTGCCAGTATCTCTCTACTGCTATACTGCAAATTGTAAAGAATATTCCAGAACAAATCATTACCATGAGGAGAGATTTGGGAGAGTTTCATTTCTTCCATCCTCCAACAGGATCATTTAAACGTTTTTAACACGGTactccacctttttttttttttttttgtctgcttgattttttttctttaattgacATGTACCATGAATGGGTgggactgtatatgtgtgtatctgtcctCCATTTTGCTCTTACTGATAAATGTTTGTGTGGGAGGGTGAGTGTTTAGTTTCTGTAGAGAAATGGAGGGGAGAAACAAcagtgtcagaaaaaaatgaaaatgccagAAATTTTAAACACAGTAGGTTAGTTCTttgataaacagaaaaaaagaattaaaaaggaaagatgCCATATCTCGTTTGGAAAGAAGAAAGCACAGATTTCGTTGAGACAAAGACGAGTCAGCATCACAGTAACTGTCTGTGAGATGGCACTTATTCCATTGGACTGGAAGAAGCCCTCTTTAAAGCTAGCTTCCAGTTATTGTGACGCTCCATTTTAATGGGCTCATTAAAAGGACACAGTGTTTGCATGCTTCTTAATTACAAGAGACATTAGTGACAGAGAAATTGTGGCACCTTTGCCAAAAGAGCTTCAGAATAGAGGACGAGAGCAGCCATTAAATAAAGCACAAGCTTAACACGACCTATAAAGCCTGAACACTGTTGGGCCCTTTCTATCCCAGATCAAGCTGTGATGCTCACCCTCATCTGCTTGCTTTGCATTCAATTTCATTTCCCTCGATATCAATTATTAATGTCCTGAGAAAATGGTGAAGTGTGTCTAAAAAGCTCACTCCCATCTCAGAGAAAGTGTCTTCAGTCTCAGCATGGCTTAATTGTATAGTGGAAGGCTGTGCTGTGGAGTCTCTCATGTCTACAGTCAATCTGAAACACTAGGCCATGTGCTCTCAGTCAGTAAGTATAGGACTAATGCACACCTGCCAACCCTGAAGAAGAATAATGTGTAGTCCCACTGAAAGGGGGAGCAAAAATGATGTAAACACTACAAAactataattatattttcaatatattaCTTTTACAAATCTCTTGTATAATCTCTTTTGTAGAAACCATGAAATATTTCCACACATCCAACATTTGTCACTGTTTATCTGCAGCTCAATATTTTGCCTGACAGGAGAGCAAACAGCAtgtttaatcactttctaatcaAGATTACTATTAGAAGTATTTGTAAAGTGGTAGATTTGACATTTTGTTGTAGGCCTAATtaatcttctttttttgtgtcaAAAATTTATGCCAAAAACCAAAACTCAattcagtctttctttctttctttctttctttatttatttagccttttttttttttaacctaaaatCTGGATATACAGTAGATTAAGATTTAGAATCCGTAAtgagcaaggaaaaactccctgagatgacatggggaagaaagcttgagaggaactaacgagcccatcctcttctgggtcaCACTGGATTGTGCAATTATGAGTCATTATTCTTCCAATATAACTCTTCCAGTATTGACCATAAAatcaaacagtactgagtgtgttgacAGGATCATCAGTTTGAGGGTCATTAATGATTTCAGTTTTTtagctttagaaataaaaagtgaCCATTTTGTCAGCAGAAAGTTTTTGGTGGCTGAAGTGTCGGTGCATCCCCAATAAATATAGTTACGTGTTGTTATCCACATGTTAGCTAAGCCAAACgtacattgatagattttatttcacattaatgaactcaaaatattcTCGGTTTAGTTTGACAGAAAGCGGGGGCTCTGCATCAGCACatctttcaagcaggaaaatcaAGTCGAGACCAAAACACCGGCCAaaacattactaatgtgagatgagGGAAAGGAGGAGGGGCTTCCAGCAGGCGTGGGTTAATATCAGAGTCTAATACACCTACGCAACTGTCAATCAATGGGGGGAGGGGGGGAGACTggtcttttggcatatttttgagtgatttcTTGTTCTAGTATACTTTGATGTGAAAATACCTAAACAAAATGCATAagggttggcaggtctgctAATGTGGGTGAACACAATATGAAGAACAGCTTGGGTCTTCGTCCATCTGCGCTCTGTGGTCTGGAGCGTAAGGAAGTTTGGATGCAAGATGATAACGCAGTTAGCTATGAAATTACATTAGCTCAACCTATAGGACCAGATGGAAAACCATGTCCCTGATTgctatattactatatactcACAACTGCAAAGATGTGTATGGAAATCTGGTCTCAAAGGAAAATTGTATAAGCCCATCTGGTCTTATATAAGATGGTGTTCCTGGACACacttaaaaggaaaaatatttagGCTATTTCAGTCTGCGAGGATTATGCAACCAGGCATTGATATAAACAGGGTCGCATCCATTCCTCACTGGTGAAAAGCAGATGAGCTCTTTCCCATCATTTCTTATCCGGAGGCTGCAGGCCAGCACCACTACATCTGCTTTCCCATAGCTAGGAAACAAACATTACAACATCATACATCAGACAAATctcatttttcacacacatcattgacttccatctttaaaaaaaaaaaaaagcgtgagGCCAGTA

Function

symbol description
tmem178b Predicted to be integral component of membrane. Predicted to be active in membrane.

NR:

description
PREDICTED: transmembrane protein 178B

GO:

id name namespace
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922583.2 True 4799 mRNA 0.45 5 20792473 20894630

Neighbor

gene id symbol gene type direction distance location
mkrn1 mkrn1,LOC107725576 coding downstream 62836 20715040 ~ 20729637 (-)
tmem121b cecr6 coding downstream 79554 20709969 ~ 20712919 (-)
lmo3 lmo3,LOC107550907,LOC107757261 coding downstream 291566 20459629 ~ 20500907 (-)
trnaa-ugc_16 NA coding downstream 370001 20422401 ~ 20422472 (-)
wif1 wif1,LOC107655595 coding downstream 535926 20242908 ~ 20256547 (-)
btbd11a btbd11a,btbd11,LOC108279962,LOC108426402,LOC107757250,LOC107725623,LOC107655613,LOC107694300,LOC105027830 coding upstream 45115 20939745 ~ 21133493 (-)
si:dkey-222f8.3 LOC108279736 coding upstream 270076 21164706 ~ 21172260 (-)
LOC113531875 LOC108279736 coding upstream 279554 21174184 ~ 21179511 (-)
ppfibp1a LOC108279739,LOC108426406 coding upstream 295295 21189925 ~ 21226343 (-)
nrf1 nrf1,LOC107729850,LOC107676924,LOC107690626 coding upstream 709270 21603900 ~ 21630503 (-)
G285852 LOC108279938 non-coding downstream 15565 20704057 ~ 20776908 (-)
G285859 NA non-coding downstream 40206 20749766 ~ 20752267 (-)
LOC117599568 NA non-coding downstream 43253 20736968 ~ 20749220 (-)
G285791 NA non-coding downstream 213990 20578256 ~ 20578483 (-)
G285693 NA non-coding downstream 350545 20440221 ~ 20441928 (-)
G285907 NA non-coding upstream 1651 20896281 ~ 20896487 (-)
G285911 NA non-coding upstream 10793 20905423 ~ 20905658 (-)
G285934 NA non-coding upstream 33891 20928521 ~ 20930920 (-)
G286192 tnnt2c,LOC107560724,LOC107655611 non-coding upstream 210178 21104808 ~ 21162920 (-)
G286212 NA non-coding upstream 246844 21141474 ~ 21142688 (-)
G285607 NA other downstream 472423 20313067 ~ 20320050 (-)
rap1b rap1b,LOC106576640,LOC107695907 other downstream 1057241 19678283 ~ 19735232 (-)
LOC113532190 NA other downstream 2044640 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 2580080 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 2580769 18156824 ~ 18211704 (-)
LOC113544587 NA other upstream 566196 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 1591606 22486236 ~ 22489467 (-)

Expression


Co-expression Network