LOC113531734 (akr1d1,LOC108425343,LOC107094558)


Basic Information

Item Value
gene id LOC113531734
gene name akr1d1,LOC108425343,LOC107094558
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 16688373 ~ 16699456 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922603.2
GGACTTCCTTGTAGGACTAGTTTGACTGTGCCTGGCTCTTGTCTGTGTGATCTGGAAACAGAGCAGCCACTTGATTAGtattaaaatacagcaaaagCATGGAGCTGACAGCTGAGAGTCACTCTGTCCCCATGAATAATGGGCTGAAAATCCCTCTGATGGGATTAGGGACATATGCAGACCCTCGGACGACTCCCAAAGGAACTGCATATAACGCAGTCAAGCTGGCCATCGAGGTCGGATACAGGCACATTGATGGAGCTCTGGTGTATTTCAATGAGCACGAAGTGGGCCAAGCCATCCGAGACAAAATTGCTGATGGAACGGTGAAAAGAGAGGACATTTTCTACTGTGGAAAGTTATGGAACACGTTTCATCCTCCTGAGCTTGTAAGACCAGCACTGGAGCGAACTCTCAAAACTCTGCAGTTGGACTATGTGGATCTCTATGTCATCGAACTCCCCATAGCTTTTAAGCCAGGAGATACTTTCTATCCAAAGGATGAGAATGGGAAGCATATTTACCATCAGACAGACCTTTGTGCCACATGGGAGGCATTAGAGGCCTGTAAAGATGCAGGGCTGGTAAAATCTCTCGGAGTGTCTAACTTCAATAAGCGGCAGCTAGAGCTGATCCTGAATAAGCCAGGTCTAAAGTACAAACCTGTGACGAATCAGATTGAATGCCACCCATACTTCACTCAGCCTAAAATGATGGAATTTTGTAAGCAGAATGAAATTGTCATTGTTGGATACAGTCCTCTTGGAACATCCAGAGACCCATCTTGGGTGAATTTAAAGTGTCCCCCTTTGCTGGAGGATGAGCTTCTGGTGTCCATTGCTACCAAGTATAAGAAGACCACAGCACAAGTTGCGCTTAGATTCAATGCTCAGCGAGGCGTGGTGGTCATTCCAAAGAGCTTCAACCCAGAGCGCATCAAGGAGAACTTTCAGATATTTGACTTCTCTCTGACCgatgatgaaatgaaagcaaTTGAAGGACTTAACAAGAACATTCGCTTTGTGGAGCTTCTCATGTGGAGTGATCATCCTGAATATCCATTCCATGAAGaatattaatgcagttttatatgagcaacaaaatgaacaacaaTGCATGATATAAAGATGACATTTTTGTTGACGGGTATTATCGGAGTGCTCCTTGTACCATTTTAATCTCTTACTATAACCTCATAGTTTACTGTAACGTTTAGGACAgtatgcatataaataattttatcacACA
>XM_034313133.1
AAGGGTGGATTCCCATGACTagggggagagaaagaaagaaactttcagggtttttttttttaattacattatgcATAACAAAGAGCAGCCACTTGATTAGtattaaaatacagcaaaagCATGGAGCTGACAGCTGAGAGTCACTCTGTCCCCATGAATAATGGGCTGAAAATCCCTCTGATGGGATTAGGGACATATGCAGACCCTCGGACGACTCCCAAAGGAACTGCATATAACGCAGTCAAGCTGGCCATCGAGGTCGGATACAGGCACATTGATGGAGCTCTGGTGTATTTCAATGAGCACGAAGTGGGCCAAGCCATCCGAGACAAAATTGCTGATGGAACGGTGAAAAGAGAGGACATTTTCTACTGTGGAAAGTTATGGAACACGTTTCATCCTCCTGAGCTTGTAAGACCAGCACTGGAGCGAACTCTCAAAACTCTGCAGTTGGACTATGTGGATCTCTATGTCATCGAACTCCCCATAGCTTTTAAGCCAGGAGATACTTTCTATCCAAAGGATGAGAATGGGAAGCATATTTACCATCAGACAGACCTTTGTGCCACATGGGAGGCATTAGAGGCCTGTAAAGATGCAGGGCTGGTAAAATCTCTCGGAGTGTCTAACTTCAATAAGCGGCAGCTAGAGCTGATCCTGAATAAGCCAGGTCTAAAGTACAAACCTGTGACGAATCAGATTGAATGCCACCCATACTTCACTCAGCCTAAAATGATGGAATTTTGTAAGCAGAATGAAATTGTCATTGTTGGATACAGTCCTCTTGGAACATCCAGAGACCCATCTTGGGTGAATTTAAAGTGTCCCCCTTTGCTGGAGGATGAGCTTCTGGTGTCCATTGCTACCAAGTATAAGAAGACCACAGCACAAGTTGCGCTTAGATTCAATGCTCAGCGAGGCGTGGTGGTCATTCCAAAGAGCTTCAACCCAGAGCGCATCAAGGAGAACTTTCAGATATTTGACTTCTCTCTGACCgatgatgaaatgaaagcaaTTGAAGGACTTAACAAGAACATTCGCTTTGTGGAGCTTCTCATGTGGAGTGATCATCCTGAATATCCATTCCATGAAGaatattaatgcagttttatatgagcaacaaaatgaacaacaaTGCATGATATAAAGATGACATTTTTGTTGACGGGTATTATCGGAGTGCTCCTTGTACCATTTTAATCTCTTACTATAACCTCATAGTTTACTGTAACGTTTAGGACAgtatgcatataaataattttatcacACA

Function

symbol description
akr1d1 Predicted to enable 3-oxo-5-beta-steroid 4-dehydrogenase activity; alditol:NADP+ 1-oxidoreductase activity; and ketosteroid monooxygenase activity. Involved in cellular hormone metabolic process; cholesterol catabolic process; and digestion. Acts upstream of or within bile acid biosynthetic process. Located in cytosol. Implicated in congenital bile acid synthesis defect 2.

GO: NA

KEGG:

id description
K00251 AKR1D1; 3-oxo-5-beta-steroid 4-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922603.2 False 1248 mRNA 0.43 9 16688373 16698853
XM_034313133.1 True 1270 mRNA 0.43 10 16688373 16699456

Neighbor

gene id symbol gene type direction distance location
kdm5a kdm5a coding downstream 2971 16663927 ~ 16685402 (-)
LOC113532402 LOC108279763,LOC108425342 coding downstream 26011 16649072 ~ 16662362 (-)
LOC113531895 usp15 coding downstream 40691 16622103 ~ 16647682 (-)
il17rel il17rel coding downstream 106937 16568695 ~ 16581436 (-)
LOC113531729 pim3 coding downstream 235434 16449786 ~ 16452939 (-)
LOC113532119 LOC108279527,LOC105916192,LOC105029310,LOC108425345,LOC107729772,LOC107666172 coding upstream 69814 16769270 ~ 16771695 (-)
kcna1b kcna1a,kcna1l,LOC108279524,LOC108425346,LOC105912431 coding upstream 116304 16815760 ~ 16817420 (-)
kiaa0930 kiaa0930,zgc:172139 coding upstream 363312 17062768 ~ 17099329 (-)
trnar-ccg_5 NA coding upstream 404109 17103565 ~ 17103637 (-)
LOC113532299 LOC108280013,LOC108425352,LOC108280014,LOC104927640,LOC103363517 coding upstream 419890 17119346 ~ 17193239 (-)
LOC117599589 NA non-coding downstream 68655 16618712 ~ 16619718 (-)
G283546 NA non-coding downstream 238607 16448439 ~ 16449766 (-)
LOC113532372 NA non-coding downstream 392183 16294880 ~ 16296190 (-)
G283503 NA non-coding downstream 448472 16239515 ~ 16239901 (-)
LOC117599449 NA non-coding downstream 606252 16078768 ~ 16082121 (-)
G284003 NA non-coding upstream 342171 17041627 ~ 17043280 (-)
G284131 NA non-coding upstream 807420 17506876 ~ 17507145 (-)
G284134 NA non-coding upstream 814154 17513610 ~ 17515240 (-)
G284135 NA non-coding upstream 821970 17521426 ~ 17523643 (-)
G284146 pacsin2,LOC108279716,LOC103038884,LOC107725788 non-coding upstream 848876 17548332 ~ 17553258 (-)
alg12 alg12 other downstream 281510 16400921 ~ 16406863 (-)
LOC113531972 muc19,LOC108280038 other downstream 1504298 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 4935460 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 5028046 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 5100349 11586304 ~ 11588024 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 139079 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 259056 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 1279307 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 1328278 18027734 ~ 18067585 (-)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 other upstream 1369142 18068598 ~ 18082361 (-)

Expression


Co-expression Network