dmtf1 (dmtf1,LOC106594134)


Basic Information

Item Value
gene id dmtf1
gene name dmtf1,LOC106594134
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 8322995 ~ 8334489 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922633.2
CTGGTCGTTTCCGGTTTGTGAAAAGAGGctccttttttcctccatcCTGGTATTTGGCTCATCCTGGTCCCTGCGAAGTGCCCGGACCCAAAACAGGAAGCTGAGCATGAATGCAGGAGATGTCTCAGGTTCTGTGGCTTTGGACTCCGTCAGTTCTGTCACTTTCACACAAGACACCGACGGTACCATCATCCTGCACTGCGCTCAGAacgATGACGGGCCGATGGGATCGGACGAGGAACCCGAACCCATTCATAAACGATTACGCTTGTCCAGTGAGGAGACAGATGACCCCGCCTCCACGCCGTCTGCTTACTCGGTGGTTGCACTTCCACtttcagagcGCGAGGAGAGCTTTGAGGTGACGATGACGGCTACAGAAATGAAAGACGGGCTGGATCAGGAGAGCAGCAATCAATCAAAGCAGGATGAGAAGTTGTCATCCTCACGGAAAACCACTGACGTGACGGCAGTCAGCCAAGCCTGGTTTACGACAAAAGAGGACAAGAACACGTTAGTGAACAAAgGTCACAAGTGGAAACAGGGGATGTGGTCGAAGGAGGAGATTGATATATTAATGAGCAACATTGAAAACTACCTCAAGAACCGGGGGATTCAGGACCCTTCAGAGATCATCTTTGACATGTCAAAAGAAGAGCGAAAGGATTTTTATCGTAGCATTGCGTGGGGTTTGAATCGTCCCCTGTTCGCAGTTTACAGACGTGTGTTGCGCATGTATGACAATCGCAACCATGTTGGCAAATACACGCAAGAGgaaattgaaaaattaaaagaGCTCAGGCAGAAGCATGGAAACGACTGGGCCACCATCGGGGCAGCTCTCGGACGCAGTGCCTCGTCAGTGAAGGACCGCTGCAGACTCATGAAGGACACGTGCCATACAGGTAAATggacagaggaagaagagaggaggCTGACAGAGGTGGTGCATGAGCTGACGGGTACAGAAGCTGGTGATGTGGTGACTCAGGGCGTTTCGTGGGCATCAGTGGCTGATCTGGTTGGCACACGCTCAGAGAAACAGTGCCGCTCCAAATGGCTCAACTACCTGAACTGGAAGCAGAGTGGAGGCACAGAGTGGACCAAAGAGGACGATATCAACCTCAtccgcaggataatTGAGCTGGCGGCGGAAGATGAGAACGAAATAAACTGGGATATTTTGGCTGAGGGATGGAGCAGCGTTCGCTCTCCTCAGTGGCTCCGGAGCAAATGGTGGACCATTAAAAGACAAGTGGCCAATCACAAAGACCTTCCGTTTCCTgtctTGCTAAAAGGACTGCAAGATGTTGTGGAAGCTCCCTCATCCACAGTGAATAAAGTCGTGGTGGTGGGCTCGCGCTCCGTTCACTCCTCATCCAGCCCTGTCACTGCGTTACAGATCCCTGTCCAAATCCCTGTACAGATCACACACGTCTCTTCTACAGACAATACGAGTGGGAGCTCTGAAAGCGGGACGATTACACTGAACTCTGGAGCGCTGCAGACGTTTGAACTTCTGCCATCCTTCCACCTGCAGCCCACCGGCACCCCTGGTACCTATTTCCTCCAGACGGGGTCCAATCAGAGCCTGCCGCTCACACTCTCTGCCAATTCCACCGTTACGCTCACAGCTGCAGGATCACCCGGCTCACCAGAGCAGATTATCTTACACAGCCTCGGCGGAGACAGCCTGAGCGACAATGTTACGGTGCAAATGTCTCATCCTGGGATCATAATCCAGACGGTGACATCAGAAGACCTTCCCGACCCTCttaaccaatcagagttgaCGTCAGAGCAGGATTTGGTCAATGAGGAGGCTGCTGAGGGGCCGGAGTGCTCGAAGGAAGGGGACGAGTCGAGTGAGCAGAGCTCTAAAGTCATGCAAGAGGACTCAACAGATAAGAGTTCGAAATTAAAGGAGGAGGTGGTGAACAGTGGGATTGGTGACGGAGCGGTGCTAATCGTTCCATCACCAGGCAGCTTCATCCCGACCAGTGACATCACCACTGACTCCGTCCTTCCCGTCGGTACACTGACAGATCCCATTCTGCAGAACCAAGAGGAAGGCTCAGACTGATGAGCACCTGTATGGGACCATCATGAAACCGTGCTGTCAATTTTGTGCATCTAATGCAAGAGAACGTTGGGGGTTTGTGGGTGAACACGCCACCGTTCTCAATACATCCTGCTGTAGAGGACAAGTATTATTGTGAAGGCCGCGTGGTGTAAGCTCGGAGAGTCAGAAACGTGTGCGTAATGTTTCCTACACTTTGCCAAACTGGTCATTAGATTTAACAGACTAGTATGAACACACTGAGCCAGTCGTCACGAGGAAGAAtcacagggagaacacacacacatacatacacacacaatgtttacTTCTATGAATCTGTATAATGTCTGAATATTTGTAGATCTGTACACGTAATGCAATTATGGACAAGGTGCATTcatagaacttttttttatggtccactgaaaagaaaagcattacACTGAAATATGACTATTTTAATGGACATCTGAGTACTGCTCTGTCATTCACATTTTatgaaatttgcactgtttCAATGTTCGGTTATGATAGTGTATTAGCCAAACACCAAGTGTCCACTTGTCTGGACAGATGTTAATTTATCAAAGGGTTACATTTTCTATGTGAGTGTATGgtcttgtgtttatttattgaataaacaaaatgttattCACCA
>XM_026922634.2
CTGGTCGTTTCCGGTTTGTGAAAAGAGGctccttttttcctccatcCTGGTATTTGGCTCATCCTGGTCCCTGCGAAGTGCCCGGACCCAAAACAGGAAGCTGAGCATGAATGCAGGAGATGTCTCAGGTTCTGTGGCTTTGGACTCCGTCAGTTCTGTCACTTTCACACAAGACACCGACGGTACCATCATCCTGCACTGCGCTCAGAacgATGACGGGCCGATGGGATCGGACGAGGAACCCGAACCCATTCATAAACGATTACGCTTGTCCAGTGAGGAGACAGATGACCCCGCCTCCACGCCGTCTGCTTACTCGGTGGTTGCACTTCCACtttcagagcGCGAGGAGAGCTTTGAGGTGACGATGACGGCTACAGAAATGAAAGACGGGCTGGATCAGGAGAGCAGCAATCAATCAAAGGATGAGAAGTTGTCATCCTCACGGAAAACCACTGACGTGACGGCAGTCAGCCAAGCCTGGTTTACGACAAAAGAGGACAAGAACACGTTAGTGAACAAAgGTCACAAGTGGAAACAGGGGATGTGGTCGAAGGAGGAGATTGATATATTAATGAGCAACATTGAAAACTACCTCAAGAACCGGGGGATTCAGGACCCTTCAGAGATCATCTTTGACATGTCAAAAGAAGAGCGAAAGGATTTTTATCGTAGCATTGCGTGGGGTTTGAATCGTCCCCTGTTCGCAGTTTACAGACGTGTGTTGCGCATGTATGACAATCGCAACCATGTTGGCAAATACACGCAAGAGgaaattgaaaaattaaaagaGCTCAGGCAGAAGCATGGAAACGACTGGGCCACCATCGGGGCAGCTCTCGGACGCAGTGCCTCGTCAGTGAAGGACCGCTGCAGACTCATGAAGGACACGTGCCATACAGGTAAATggacagaggaagaagagaggaggCTGACAGAGGTGGTGCATGAGCTGACGGGTACAGAAGCTGGTGATGTGGTGACTCAGGGCGTTTCGTGGGCATCAGTGGCTGATCTGGTTGGCACACGCTCAGAGAAACAGTGCCGCTCCAAATGGCTCAACTACCTGAACTGGAAGCAGAGTGGAGGCACAGAGTGGACCAAAGAGGACGATATCAACCTCAtccgcaggataatTGAGCTGGCGGCGGAAGATGAGAACGAAATAAACTGGGATATTTTGGCTGAGGGATGGAGCAGCGTTCGCTCTCCTCAGTGGCTCCGGAGCAAATGGTGGACCATTAAAAGACAAGTGGCCAATCACAAAGACCTTCCGTTTCCTgtctTGCTAAAAGGACTGCAAGATGTTGTGGAAGCTCCCTCATCCACAGTGAATAAAGTCGTGGTGGTGGGCTCGCGCTCCGTTCACTCCTCATCCAGCCCTGTCACTGCGTTACAGATCCCTGTCCAAATCCCTGTACAGATCACACACGTCTCTTCTACAGACAATACGAGTGGGAGCTCTGAAAGCGGGACGATTACACTGAACTCTGGAGCGCTGCAGACGTTTGAACTTCTGCCATCCTTCCACCTGCAGCCCACCGGCACCCCTGGTACCTATTTCCTCCAGACGGGGTCCAATCAGAGCCTGCCGCTCACACTCTCTGCCAATTCCACCGTTACGCTCACAGCTGCAGGATCACCCGGCTCACCAGAGCAGATTATCTTACACAGCCTCGGCGGAGACAGCCTGAGCGACAATGTTACGGTGCAAATGTCTCATCCTGGGATCATAATCCAGACGGTGACATCAGAAGACCTTCCCGACCCTCttaaccaatcagagttgaCGTCAGAGCAGGATTTGGTCAATGAGGAGGCTGCTGAGGGGCCGGAGTGCTCGAAGGAAGGGGACGAGTCGAGTGAGCAGAGCTCTAAAGTCATGCAAGAGGACTCAACAGATAAGAGTTCGAAATTAAAGGAGGAGGTGGTGAACAGTGGGATTGGTGACGGAGCGGTGCTAATCGTTCCATCACCAGGCAGCTTCATCCCGACCAGTGACATCACCACTGACTCCGTCCTTCCCGTCGGTACACTGACAGATCCCATTCTGCAGAACCAAGAGGAAGGCTCAGACTGATGAGCACCTGTATGGGACCATCATGAAACCGTGCTGTCAATTTTGTGCATCTAATGCAAGAGAACGTTGGGGGTTTGTGGGTGAACACGCCACCGTTCTCAATACATCCTGCTGTAGAGGACAAGTATTATTGTGAAGGCCGCGTGGTGTAAGCTCGGAGAGTCAGAAACGTGTGCGTAATGTTTCCTACACTTTGCCAAACTGGTCATTAGATTTAACAGACTAGTATGAACACACTGAGCCAGTCGTCACGAGGAAGAAtcacagggagaacacacacacatacatacacacacaatgtttacTTCTATGAATCTGTATAATGTCTGAATATTTGTAGATCTGTACACGTAATGCAATTATGGACAAGGTGCATTcatagaacttttttttatggtccactgaaaagaaaagcattacACTGAAATATGACTATTTTAATGGACATCTGAGTACTGCTCTGTCATTCACATTTTatgaaatttgcactgtttCAATGTTCGGTTATGATAGTGTATTAGCCAAACACCAAGTGTCCACTTGTCTGGACAGATGTTAATTTATCAAAGGGTTACATTTTCTATGTGAGTGTATGgtcttgtgtttatttattgaataaacaaaatgttattCACCA

Function

symbol description
dmtf1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human DMTF1 (cyclin D binding myb like transcription factor 1).

NR:

description
PREDICTED: cyclin-D-binding Myb-like transcription factor 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007049 cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K21625 DMTF1, DMP1; cyclin-D-binding Myb-like transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922633.2 True 2720 mRNA 0.49 17 8322995 8334489
XM_026922634.2 False 2717 mRNA 0.49 17 8322995 8334489

Neighbor

gene id symbol gene type direction distance location
dclre1c dclre1c,LOC108279967,LOC106595997 coding downstream 11326 8301479 ~ 8311669 (-)
cdnf cdnf,LOC107744152,LOC107726000,LOC107592258,LOC107656217,LOC107581044 coding downstream 32322 8283796 ~ 8290673 (-)
shank3b LOC108279923,LOC108428159 coding downstream 41116 8250112 ~ 8281879 (-)
tymp tymp,LOC104957567 coding downstream 75249 8239755 ~ 8247746 (-)
si:ch73-139j3.4 NA coding downstream 96874 8221552 ~ 8226121 (-)
tspan9b tsn9,LOC108428166,LOC107658833,LOC107580843,LOC107656293,LOC107725884,LOC103041281 coding upstream 23821 8358310 ~ 8388357 (-)
mical3b mical3b,LOC108279684,LOC107726023,LOC107658814,LOC107656292,LOC107592209,LOC108428167 coding upstream 56189 8390678 ~ 8426378 (-)
svopl svopl,LOC107656247,LOC107725968,LOC107744112 coding upstream 95006 8429495 ~ 8439796 (-)
si:dkeyp-27e10.3 kiaa1549,LOC108279680 coding upstream 108720 8443209 ~ 8471894 (-)
parp12b LOC108279682,LOC108428170 coding upstream 139448 8473937 ~ 8482571 (-)
G278920 NA non-coding downstream 83319 8238974 ~ 8239676 (-)
G278911 NA non-coding downstream 105702 8217013 ~ 8217293 (-)
G278520 NA non-coding downstream 443978 7796835 ~ 7879017 (-)
LOC117599592 NA non-coding downstream 788713 7530784 ~ 7534282 (-)
G278312 NA non-coding downstream 826732 7495572 ~ 7496263 (-)
G278963 NA non-coding upstream 55009 8389498 ~ 8390559 (-)
G279064 NA non-coding upstream 277629 8612118 ~ 8612342 (-)
LOC117599455 NA non-coding upstream 363941 8698430 ~ 8698791 (-)
LOC113532431 NA non-coding upstream 474731 8809220 ~ 8809338 (-)
G279382 NA non-coding upstream 859127 9193616 ~ 9194003 (-)
G278912 NA other downstream 103315 8218561 ~ 8219680 (-)
G278634 NA other downstream 254918 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 352424 7966819 ~ 7970571 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 822916 7421988 ~ 7500079 (-)
G277575 copg2,LOC108279806,LOC102787195 other downstream 2338431 5982292 ~ 5984564 (-)
G279415 NA other upstream 872862 9207351 ~ 9208563 (-)
cracr2ab LOC108280118 other upstream 1543992 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 1921483 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 2660616 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 2744679 11079168 ~ 11094176 (-)

Expression


Co-expression Network