mkln1 (mkln1,LOC107754054,LOC107655615,LOC107560731,LOC107757245,LOC107587826)


Basic Information

Item Value
gene id mkln1
gene name mkln1,LOC107754054,LOC107655615,LOC107560731,LOC107757245,LOC107587826
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9392029 ~ 9423268 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922643.2
GCGGCCGCCATGACGTGTTGTTATCGACACGCCCCCATCTCGGAAAATCGGGGTCATAAAAAAATACGAGTTTTCCCGTTGCAATTAATCCCGACATTGTGTTGATCGTCAAGTGCGCTCACCTCGCAATTGCGCCATTTCCGACAGGCCCCGAAGGTCGCGTTATTATTATTCGCCGAAATCGAAACTCTCACGCGCGGTCCCTTTAAGACGCCGCCACGCCCACAGGAGGCTCGTGCACGCGACGCGCTGCTTGTTGTTTGTGCTCCAACAAGATGGCGGTGGCTCCTGAGAGCAGAGTGCTTTCCTACACTGTTTATAAATGGAGTTCATACTCCTCGACATACTTACCCGAGAACATTTTGGTTGATAAACCCAATGACCAGTCTTCCAGGTGGTCATCAGAAAGCAATTATCCTCCACAGTACTTGATCTTAAAACTGGAGAGACCAGCTATTGTACTAAGCATCACCTATGGCAAGTATGAGAAAACACACGTTTGCAACCTGAAGAAGTTCAAGGTGTTTGGAGGCATGAGTGAGGAAAACATGACCGAGCTCTTGTCCAGTGGCCTTAAGAATGACTTCAACAAGGAGACATTCACGCTGAAGCACAAGATCGATGAGCAGATGTTCCCTTGCAGATACATTAAAATAGTGCCTCTGATGTCATGGGGCCCCAGTTTTAACTTCAGTATCTGGTACATTGAGCTGCATGGGATAGAAGATCCAGATGTAGTCCAGCCCTGCCTTAACTGGTACAGTAAGTACCGTGAACAGGAGGCCATCCGTCTGTGTCTGAAGCACTTCCGGCAGCACAACTACACTGAGGCCTTCGAGTCGCTGCAGAAGAAGACGCGTATAGCGCTGGAGCACCCCATGCTCACGCACCTCCACGAGCGCCTGGTCCTTCGTGGAGACTTTGATGCCTGTGAGGAGCTCATCGATAAAGCTGTGAGAGATGGCTTGTTTAATCAGTACATCAGTCAACAGGAGTACAAGCCACGCTGGAGTCAGATCATCCCCAAATGCACCAAAGGTGACGGGGATGACAGTAGGCCCGGGATGAGAGGTGGTCATCAGATGGTGATAGATGTGCAGACGGagactGTGTATCTGTTTGGAGGTTGGGATGGCACACAGGACTTGGCAGATTTCTGGGCCTATAGTGTGCAGGAGAATCAGTGGGCCTGTATCtccagagacacagagaaagagaatGGTCCCAGTGCACGCTCCTGCCATAAGATGTGCATCGACTCTCAGAGGAGGCAGATCTACACGCTGGGCCGCTATCTGGACTCCTCTGTCCGAAACAGCAAGTCTCTGAAGAGTGACTTCTACCGGTACGACATTGATGCTAACACGTGGACGCTGCTCAGCGAGGACACTTCTGCAGATGGAGGCCCTAAACTTGTGTTCGACCACCAGATGTGCATGGACTCGGAGAAGCACATGATCTACACGTTTGGTGGTCGGATCCTGACATGTAATGGTAGTGTTGATGATGGACGCACGTCAGAGCCGCAGTTCAGTGGCCTGTATGCCTATCAGTGCCAAGCAGGTACCTGGAGCCTTCTGAGAGACGACTCGTGTAACGCCGGCCCTGAGGACGTGCAGTCTCGCATCGGCCACTGCATGCTCTTTCACACGAGGAATCGCTGCCTGTATGTGTTTGGAGGCCAGAGGTCCAAGACGTACCTGAATGATTTCTTTAGTTACGACGTGGATGCTGACCACGTAGAGATCATCTCCGACGGCACCAAGAAAGACTCTGGCATGGtaccAATGACTGGCTTCACCCAGCGTGCCACCATCGACCCAGAACTGAACGAGATTCATGTTCTGTCAGGCCTTAGCAAAGACAAAGATAAACGAGAGGAGAATGTCCGGAACTCCTTCTGGATCTATGACATTGCACGCAACAACTGGTCGTGCGTGTATAAGAATGACCAGGCTGTGAAGGAGAACCCCAGCAAGACACTGCAGGAGGAAGAGCCGTGCCCTCGGTTCGCTCACCAGCTCGTGTATGATGAGCTGCACAAGGTGCATTACCTGTTTGGGGGAAACCCAGGCAAGTCAAGCTCTCCTAAGATGCGTCTGGATGACTTTTGGTCTCTGAAACTCTGCCGCCCATCTAAAGAGTACTTACTGAGACACTGCAAATATCTCATCCGCAAATACAGGTTTGAGGAGAAGGCTCAGACCGAACCACTGAGTGCCCTGCAGTACTTGCAGAATGATCTCTCTCTGACTGTGGACCACTCTGACCCTGATGAGACTAAAGAGTTTCAGCTCCTGCCCTCAGCGCTCTTCAAGTCCAGCTCAGATTTCATCCCACTGGGCTTTTCAGATGTAGATCAGACGTACGCCCAGCGCACACAGCTCTTTGACACACTGGTAAACTTCTTCCCTGACAACATGACCCCGCCCAAGGGTAACCTCGTTGACCTCATTACCCTGTAGCCACACCCACTGAGCTCTATCCCTTCACTCTTTATGCCTCTAAGACTTGTCCCACTGAAAACAGAAGTTATTTTTCTACATCCACTTCAGAATCACCATGCCGGCCGAATGTGGCTTCTTCACAAGCAGGAAGGTATAACAAAACTGGAACATACCTgcttaatataatatttaatttattcaccCAAATCTGAAATCATAAAGTCCCTGAAGTGTCTACAGCACTTGTGTACATTTATCTTTCCTCTTAGAAGGTGTCGGAGGAAGGTGAAATCCACAAATCCAAGACTCactttgtttttcctcttttattccAGTCGGACTCGGTTTCCGGTCTAGCTCAGCTTTCATCTTTATTTCAGcttatgaatatttaatgctCACTATAGAAAAGGGTACAGTAGAGATAATGGCCATGGCTGTTATCTTCCCCtctacatctcacacactttgGTGATGGAAGCATTTGGTTTATTGAATGTGGGCTTTGATATGCATTTGATTATGCTTGGTAACATTTTGCCAAATGAAGAGGAGTGTGATTACATGGCAAGTTTGCAACCTTTATTTCTAAGCTTACGGGATGGAAATTGTGTGAATCTGTCCTtgtttgctgtttatttttctgaaaaaaatagatttaaataatGGCCTCATTCTGAACCTgctgctttttatttcttagcTACACAGAAATAATGAGTATTGAGCACATTTTAACGATATAATTTGATCGGCGTGCTTCAGATGATATTCTCTCCTCACTGGTACTGAAAGACCTTTCTTTTCCCATTTGTGCCGTAGCAGTATTGGGTGTCTTTATCTCAGTCTGAAAGTAATTCAGTGAATTTATTTCTCAcctaaagaacaacaaaaaacagtaaCAATTGCGAACATTATTGGATTGGTGACAGCAAACTCCTGCAGCCTCACTGGAGCCTTCCAGAAAGTGTCATTGCTCCATTATGGTCCATCaccgtgtgtgtgcgcgtgcgcgtgcgtgtgtgtgtgcgtgtgcgtgtgcgtgtttTGAAGCTTGCACTTGTCCACTGAGTCTCGGGAATCAAGGTACTTGATACTGCGATGTCTGATGATTTTAGGAATCCTGTGGTGGCACTACTGAACACGCCGGAATGTTACTTGGAGGTAGTCTTCCGTATAATGTAGTGTGTAAATATAGccatgtataaatgtgtgtatatataagatCTCCTATTTGAAGTATTACTAATGGCCTGATTTTGAAGGTTTTTTCCCCTGAAAGCGTAATATATTGGGACAGCATTTTGGCTTTATTGGTGTtaataattagtttaaaaatgttaataactgGCTTATTCTCTCCTTGTGCGTATTGGaggtatattatattaataaaaggtGCACAACAAAGTACAGTTTATCCCATACAAAGCTGTGTGCGCACATCTGTACAAAATCAGATTAATCAAGAAACACATCTTTACCATATGAATACAAATGAATAGTGTAATCTTAGGAGTTCTTGCCTTAACCTGTTCTACATAGCTGCCCATTTCTTCATTCCTAGCATTCTCTTTCAGAGACTCCTGTGTAGTACAGCACATTTAAGTCAGCTTAATTTACCATTGTCAAGCTGGTTTTATAGTGTGCgagttacatttatttacccATTCATAGCCTCCGTTTTCCCAATTAAATCCCCGATTGAGTGTTTCCTGGGCTTGATTGTAATTAGAGCTGCTGCAAGAGTCATTTAGTAATTTTGGGTTTTGTGCCAGGAAGAAGGTTAAACATGTGGgttgtgaaaaatgtaaaagaggaaaaacacaatGGGAGCaccttttataaaacattttggctTGGACTCTTTTTATAgccctctttttgtttttgtttttttaattcttcgCTCCTTGAAAACATCTcacttttcctcctctctcgTCTCCTGAGTGAGGATATCGGGATATGTGAACACTACACTGTGGCAGACATGAATGTGTAGAAAATActttaaaacaaaagcattgTATGTAATGTACATAATGAATAAAGATTGTATTTTGTTCA

Function

symbol description
mkln1 Predicted to be active in cytoplasm. Orthologous to human MKLN1 (muskelin 1).

NR:

description
muskelin isoform X3

GO:

id name namespace
GO:0007155 cell adhesion biological_process

KEGG:

id description
K23337 MKLN1; muskelin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922643.2 True 4517 mRNA 0.45 18 9392029 9423268

Neighbor

gene id symbol gene type direction distance location
LOC113531956 LOC108279597,LOC108279598 coding downstream 32979 9350878 ~ 9359050 (-)
LOC113532331 LOC108279597,LOC108279598,LOC105020203,LOC105912087 coding downstream 44983 9338768 ~ 9347046 (-)
parietopsin LOC108279599 coding downstream 100620 9289095 ~ 9291409 (-)
tspan12 tspan12,LOC107592202,LOC107656244,LOC107565667,LOC107658802 coding downstream 203094 9167589 ~ 9188935 (-)
hsp90b1 hsp90b1,LOC107656288,LOC107726017 coding downstream 758074 8626921 ~ 8633955 (-)
asb13a.2 asb13a.2,LOC108280001,LOC108436004,LOC103022068,LOC107754063,LOC107560715,LOC107655562 coding upstream 136643 9559911 ~ 9593266 (-)
asb13a.1 LOC108279822,LOC108436003 coding upstream 171190 9594458 ~ 9600035 (-)
gdi2 gdi2,LOC108279819,LOC108436005,LOC107754057,LOC107560733,LOC107694307 coding upstream 177309 9600577 ~ 9615300 (-)
ankrd16 ankrd16 coding upstream 194140 9617408 ~ 9623595 (-)
trnay-gua_2 NA coding upstream 199265 9622533 ~ 9622619 (-)
G279592 NA non-coding downstream 2282 9386133 ~ 9389747 (-)
G279588 NA non-coding downstream 54499 9336336 ~ 9337530 (-)
G279382 NA non-coding downstream 198026 9193616 ~ 9194003 (-)
LOC113532431 NA non-coding downstream 582691 8809220 ~ 8809338 (-)
LOC117599455 NA non-coding downstream 693238 8698430 ~ 8698791 (-)
G279620 NA non-coding upstream 60825 9484093 ~ 9484948 (-)
G279621 NA non-coding upstream 61799 9485067 ~ 9485769 (-)
G279624 net1 non-coding upstream 94718 9517986 ~ 9519727 (-)
G279625 NA non-coding upstream 96565 9519833 ~ 9520078 (-)
G279641 NA non-coding upstream 109954 9533222 ~ 9533421 (-)
G279415 NA other downstream 183466 9207351 ~ 9208563 (-)
G278912 NA other downstream 1172349 8218561 ~ 8219680 (-)
G278634 NA other downstream 1323952 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 1421458 7966819 ~ 7970571 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 1891950 7421988 ~ 7500079 (-)
cracr2ab LOC108280118 other upstream 455213 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 832704 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 1571837 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 1655900 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 1815667 11238935 ~ 11259412 (-)

Expression


Co-expression Network