c18h12orf66 (c19h12orf66,cunh12orf66,LOC107592225,LOC107658829,LOC107726025,LOC107743608)


Basic Information

Item Value
gene id c18h12orf66
gene name c19h12orf66,cunh12orf66,LOC107592225,LOC107658829,LOC107726025,LOC107743608
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 8103474 ~ 8114786 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922658.2
ATTAGTGCCATGGAAACATGGAGGCAAATATATACGGCGCGTGAGAGGaagctttaaataataatatgtaatttaACCGGAAACATGATGGTCCATGGAAGTGTTTTCGCCCTGGCTGTGTTTGAGAGAGATGCTGCTTGCAGAAAATTTAATCCTGAATCTTCAGCCATCATGGGCGAGGCTTTGCGTGAAGACGAGCTGCGGCCGGTTCCCAGAGAGAGAGCCGTGCTGGAGAGCTTCTTCACGCAGCTCGGCATGTTCTGGTTTGACCGAGCTAAAGACTACgtggagaaagagaaggagcaGAGCAGCAGGAGCGCCGCGGCCATCTGGAGCTCTCTGCTCGCTGCTCTGGCGCACCTGGCGGCCGCGGAGAAGGCCTACCACAACATGACCTTCCTCGGGCAAAAACTAGGTGGTCAGTCGTTCTTCAGCAGGAAGGATTCCATCAGGACCATTTACACGTCCCTGCAGAACGAGCTGAAGAAGGTGGTCTCCATGGGACGCCCGGCACCGACCAGCTCCACGCCGTACCTGGAGGAGCTGCTGTCGCATTTATCCGAGCAGCTGTGCCACTTCACGCAGGCCAGGATGGAGCTCGCTGACCTCTACGAGAAGATGCACTGCCTCGGGAGCCAGAAAACGGTCAACTCCGAGGAGCTGGTGAGCACGCTGGAGAGTATCCTGCACAAATACAGCTCCAGGTTCCATCATCCCATCCTGAGTCATCTGGAGAGTGGCTTCCAGGTGGAGGTGGACGTTTTGGCGCAGCTGCTACGCTGCCAGGCTCAGATCTCAGAGTGGCACTTCCTGCCCTCGCTGCTCAACTTGCACGGAGCTCACGCCAAACTGCAGGCATGGGCTCACGTGTTCGAGCGCCAGCGCGAGACCCGCAAGCACCTGTTCGGCGGCCAATCCCAGAAGGCTGTGCAGCCTCCGCACTTGTATTCATGGTTACAGCGCCTGCAGGGAGCGCTTTTGGCCAagttcagcttttatttccatgAAGCGCTGAGTCGGCAAGCACCGCCCTCTGAGATGAAGGCGCTGACGGCTCGCACTTCACCTGATTATTTTGGAAAGATCTCAGCCTTCGTGCGCAAGCATGACGCCACCAACGTTTCATTGGTGTTTGACAACCGTGGCATGGAGAGCTTCCAGGGCCACGGCTACCACCATCCACACTCGTACCGAGAGGCTCCCAAAGGCGTGGACCAGTTCCCTGCCGTGGTGTCTGTTCCGGGCGGCGAGCGGCCGTTAAACCACTGGCCCAACGTCATCATGATCATGAGCGACCGCGCCAACGAACTCAACACACTCGACAAGGTTACGTACTTTTACGACGACAAGGTCCAGAGTACGTACTTCATGACGAGACCCGAGCCTCACTTCACGCTTGTTGTGATCTTTGATGGCAAGAAGGCGGAGAAGGACTCGCACATCGTGGGCTTTCTGCATGAGATTTCTGGCTCACTGAGGAACTCCAAACCCTTCAGCACACTCAAGCCAGGCTCCAAAGGCTGaacatgatcatgtgacctacttCACATCTAGCATTCATTAACGTTAGCTATATAAACTTTGGCTTTCAGTTAATTTAGAAGAACATCTCATCCATCTGATTAAACAGGGTCTATTTGAGGCATCATGCTGCTGAaacttttaatattataatctttattttaatctcGAAGAAACACCAGAGGTCCAGTAGGCAGTCATTTTCATTTGATATTGTGAACTATTGtgaccaatcagaccacagatgttttttttttttgtttgttttttttttagtattttttttagcaattgAATTTCACTCCTGCTGCTATGAAACCTATTACaattcacattattttaatatgcagtgcataatattttaacagctgatcatttgattttataatttcctattttttgtactgtaattattgactaaaataaagtttagataTCATTTAAACAGTTAGCAACATGGACGTAATTGAACAGATTCATCGTGGGAGTTTATAAAGGAGTGACGTCTTTACAGTTTGCACTCGAATGATTTCACTGTTCATGtgctcagaaataaataaataaataatagctttAAAGGTGGTGTTGATTAAGTCAGAATACTTTTGGACATCTTTGGTGAAGTTCTCCTCACATTCCTGCAGCTTCAGTGAAATATCTGATTAGAAGAGAAACGCTAGTCTCTGGAAAATGggggggaaaagaaaaggaatgacgtggaccaccaacatccaaccaatcagcacAAAGAAGTGCTTCTACTTGGCCGTCGGTTCAGAAAGTTGTTCTAGCCTCGAAAGCATGGCTTTGGCGCGAACACAATGACTTTCTTGGTTTGAAGTTTGAGCTTCAAAACGCCCAGCTTTAGCTAGTTTCTGCCAAACTGCTGATTGCACCTTAATGTGAATTGTTCAGTGTTATGAGTAATCATCTGCATTTGCTGTTATTCTTGACTATTTTGtggctttaaattatttttatgtgaattaaataatgtgaataatataacattttacaGGAATGcaaactgaacttttttttttctctcatctgtATGAGTCGACACTTGATCTGTTATTAAACTGGAATGTTAAACCAT
>XM_026922659.2
TAGGCATGCGCgttctgtatttttgtactttttgtccCTTCTGACTTGCCGTAGTGTTGTTACTGAAAGCTGTCATGGCGGTGTTCTAGGGtctttttgcatttatttatatTTTAATCCTGAATCTTCAGCCATCATGGGCGAGGCTTTGCGTGAAGACGAGCTGCGGCCGGTTCCCAGAGAGAGAGCCGTGCTGGAGAGCTTCTTCACGCAGCTCGGCATGTTCTGGTTTGACCGAGCTAAAGACTACgtggagaaagagaaggagcaGAGCAGCAGGAGCGCCGCGGCCATCTGGAGCTCTCTGCTCGCTGCTCTGGCGCACCTGGCGGCCGCGGAGAAGGCCTACCACAACATGACCTTCCTCGGGCAAAAACTAGGTGGTCAGTCGTTCTTCAGCAGGAAGGATTCCATCAGGACCATTTACACGTCCCTGCAGAACGAGCTGAAGAAGGTGGTCTCCATGGGACGCCCGGCACCGACCAGCTCCACGCCGTACCTGGAGGAGCTGCTGTCGCATTTATCCGAGCAGCTGTGCCACTTCACGCAGGCCAGGATGGAGCTCGCTGACCTCTACGAGAAGATGCACTGCCTCGGGAGCCAGAAAACGGTCAACTCCGAGGAGCTGGTGAGCACGCTGGAGAGTATCCTGCACAAATACAGCTCCAGGTTCCATCATCCCATCCTGAGTCATCTGGAGAGTGGCTTCCAGGTGGAGGTGGACGTTTTGGCGCAGCTGCTACGCTGCCAGGCTCAGATCTCAGAGTGGCACTTCCTGCCCTCGCTGCTCAACTTGCACGGAGCTCACGCCAAACTGCAGGCATGGGCTCACGTGTTCGAGCGCCAGCGCGAGACCCGCAAGCACCTGTTCGGCGGCCAATCCCAGAAGGCTGTGCAGCCTCCGCACTTGTATTCATGGTTACAGCGCCTGCAGGGAGCGCTTTTGGCCAagttcagcttttatttccatgAAGCGCTGAGTCGGCAAGCACCGCCCTCTGAGATGAAGGCGCTGACGGCTCGCACTTCACCTGATTATTTTGGAAAGATCTCAGCCTTCGTGCGCAAGCATGACGCCACCAACGTTTCATTGGTGTTTGACAACCGTGGCATGGAGAGCTTCCAGGGCCACGGCTACCACCATCCACACTCGTACCGAGAGGCTCCCAAAGGCGTGGACCAGTTCCCTGCCGTGGTGTCTGTTCCGGGCGGCGAGCGGCCGTTAAACCACTGGCCCAACGTCATCATGATCATGAGCGACCGCGCCAACGAACTCAACACACTCGACAAGGTTACGTACTTTTACGACGACAAGGTCCAGAGTACGTACTTCATGACGAGACCCGAGCCTCACTTCACGCTTGTTGTGATCTTTGATGGCAAGAAGGCGGAGAAGGACTCGCACATCGTGGGCTTTCTGCATGAGATTTCTGGCTCACTGAGGAACTCCAAACCCTTCAGCACACTCAAGCCAGGCTCCAAAGGCTGaacatgatcatgtgacctacttCACATCTAGCATTCATTAACGTTAGCTATATAAACTTTGGCTTTCAGTTAATTTAGAAGAACATCTCATCCATCTGATTAAACAGGGTCTATTTGAGGCATCATGCTGCTGAaacttttaatattataatctttattttaatctcGAAGAAACACCAGAGGTCCAGTAGGCAGTCATTTTCATTTGATATTGTGAACTATTGtgaccaatcagaccacagatgttttttttttttgtttgttttttttttagtattttttttagcaattgAATTTCACTCCTGCTGCTATGAAACCTATTACaattcacattattttaatatgcagtgcataatattttaacagctgatcatttgattttataatttcctattttttgtactgtaattattgactaaaataaagtttagataTCATTTAAACAGTTAGCAACATGGACGTAATTGAACAGATTCATCGTGGGAGTTTATAAAGGAGTGACGTCTTTACAGTTTGCACTCGAATGATTTCACTGTTCATGtgctcagaaataaataaataaataatagctttAAAGGTGGTGTTGATTAAGTCAGAATACTTTTGGACATCTTTGGTGAAGTTCTCCTCACATTCCTGCAGCTTCAGTGAAATATCTGATTAGAAGAGAAACGCTAGTCTCTGGAAAATGggggggaaaagaaaaggaatgacgtggaccaccaacatccaaccaatcagcacAAAGAAGTGCTTCTACTTGGCCGTCGGTTCAGAAAGTTGTTCTAGCCTCGAAAGCATGGCTTTGGCGCGAACACAATGACTTTCTTGGTTTGAAGTTTGAGCTTCAAAACGCCCAGCTTTAGCTAGTTTCTGCCAAACTGCTGATTGCACCTTAATGTGAATTGTTCAGTGTTATGAGTAATCATCTGCATTTGCTGTTATTCTTGACTATTTTGtggctttaaattatttttatgtgaattaaataatgtgaataatataacattttacaGGAATGcaaactgaacttttttttttctctcatctgtATGAGTCGACACTTGATCTGTTATTAAACTGGAATGTTAAACCAT

Function

GO: NA

KEGG:

id description
K23297 C12ORF66; KICSTOR complex protein C12orf66

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922658.2 True 2620 mRNA 0.47 4 8103474 8114786
XM_026922659.2 False 2585 mRNA 0.47 4 8103474 8114034

Neighbor

gene id symbol gene type direction distance location
hcfc2 hcfc2 coding downstream 146865 7946410 ~ 7956609 (-)
LOC113531950 NA coding downstream 166683 7932973 ~ 7936791 (-)
chst11 chst11,LOC107580584,LOC107656313,LOC107743617,LOC107592229 coding downstream 178776 7871744 ~ 7924698 (-)
c18h12orf45 c19h12orf45 coding downstream 273336 7826289 ~ 7830138 (-)
scube1 scube1,LOC107592233,LOC107726032 coding downstream 316995 7701032 ~ 7786479 (-)
si:ch73-139j3.4 NA coding upstream 106766 8221552 ~ 8226121 (-)
tymp tymp,LOC104957567 coding upstream 124969 8239755 ~ 8247746 (-)
shank3b LOC108279923,LOC108428159 coding upstream 135326 8250112 ~ 8281879 (-)
cdnf cdnf,LOC107744152,LOC107726000,LOC107592258,LOC107656217,LOC107581044 coding upstream 169010 8283796 ~ 8290673 (-)
dclre1c dclre1c,LOC108279967,LOC106595997 coding upstream 186693 8301479 ~ 8311669 (-)
G278520 NA non-coding downstream 224457 7796835 ~ 7879017 (-)
LOC117599592 NA non-coding downstream 569192 7530784 ~ 7534282 (-)
G278312 NA non-coding downstream 607211 7495572 ~ 7496263 (-)
LOC117599447 NA non-coding downstream 687403 7414348 ~ 7416071 (-)
G278275 NA non-coding downstream 874034 7229005 ~ 7229440 (-)
G278911 NA non-coding upstream 102227 8217013 ~ 8217293 (-)
G278920 NA non-coding upstream 124188 8238974 ~ 8239676 (-)
G278963 NA non-coding upstream 274712 8389498 ~ 8390559 (-)
G279064 NA non-coding upstream 497332 8612118 ~ 8612342 (-)
LOC117599455 NA non-coding upstream 583644 8698430 ~ 8698791 (-)
G278634 NA other downstream 35397 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 132903 7966819 ~ 7970571 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 603395 7421988 ~ 7500079 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other downstream 2098345 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other downstream 2118910 5982292 ~ 5984564 (-)
G278912 NA other upstream 103775 8218561 ~ 8219680 (-)
G279415 NA other upstream 1092565 9207351 ~ 9208563 (-)
cracr2ab LOC108280118 other upstream 1763695 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 2141186 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 2880319 10995105 ~ 11007143 (-)

Expression


Co-expression Network