tfec (tfec)


Basic Information

Item Value
gene id tfec
gene name tfec
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19095392 ~ 19107426 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922669.2
cacactcatccttcTTCTTTCCGTGCCTGACTGCACACCCAGCAGACTGACTCACAGCAACTCCTTCTTCATTGAGGTTTCAGTGTATGGACGTTGGAATTGTGTGTCAAAGATAGAGGTTGTGTTGCTGAACACTTCTGCTGCTGGAGCCATGAGCCACCGCTGTGTAGTCAAAGTCATCTCCCTTACTGAGGTCCAGCTGCTGCCGGTTCAGAACCACCTGGAGAACTCCAAGTACCACCTCCACCAAGCCCAGGCCCAGCAGGTCAAACAGTACCTGACTCTAGGCACCAAGCTTCCCGGCCAGGCCCACCCACACCCGGGCCAGGCCCTGGGCACAATGCCTGTCATGCGCAACGGCCATATGACACCTGTCAGCAACAACAGCACGCCTGGCAGCCCCGTCACCCTGTTCACCCTTGCCAATAGCCACGACACTGAGTTTCCAGTGGACGAAGTTATTGATGATCTTATTGGCTTTGAATCTGGGTTCAATGATGGGAGCTTGGAGTGTATGGAGCCTAGCatcataatgcaaaataatGTGGCCCTGAACAGCGGCATGCTGGAAGTCTATGGCGGTGACCAAGGTATGACTGCCTCTCATGGTGGACTGACACCCCCCTCATGCCCCACAAAGCTCTCTGTTAAAATGGAAGTCACAGAACACGACACCAGAGTCTTAGCAAAAGAGAGGCAGAAGAAAGACAATCACAATCTGATTGAAAGAAGGCGACGATACAACATTAACTACAGAATCAAAGAGCTTGGAACTCTGATACCGAAGTCCAATGACCCTGATATGCGCTGGAACAAAGGGACCATCCTCAAGGCCTCAGTGGAGTACATTAAGTGGCTGCAGAAAGAGCAGCAACATGCGCGAGAGCTGGAGAGCCGCCAGAAGAAGCTGGAGCAGGCTAACAGGAGACTGCTGCTCAGGATTCAGgaGTTAGAGATCCAAGCTCGTGCTCATGGTCTGCCTAGTAATCTGGGAGCAGCGGAGCTCTCATCTCACCTCatcaaacagcagcagcaggcacTTCCTGCTCCTGCGGTTACTCCTGGAGCACAGACTTCTCTCTACCCACAGGATGAGCTGAACGGCCCCGAGTACCTCCAGAGGAACTCCCTGTCTGCGCTCCATGCCAGAAATGAGGGCAACAGCAGCTCCTCTGGTGAGCATGCAGACACCTCTTCGACCACCTTCTCGGACCCGCTGTCGCACTTCACGGACTTCTTTAGTGCCACTCTGAAGGAGGAACAGCGGCTGGACGAGCTCCTCATGGAAGAGGCGCTGTCTCCGTTCGGGACTGACCCGCTGCTTTCAGCCACTTCGCCCAATGCCTCTAAGGGAAGCAGCCGCAGGAGCAGCTTTAGCACGGATGACAACGACGACCTTTGACCGCTGTTTTCCCACACTTCTGGACCTGGCGTATGTGACTGACCTGCAGCTTTTCTGCTAGACACAGGGACACATCTTCTATGTCTCCTGGAAAATCAGAAACATCAAAAAGGAGAGATGAACTGATATTGTGAAACTACTGTACAGCCTGCTGCGTCTGACGCACAGCCTTTACCGTAGACGCTTGTAACACTGGTCACACACATCACTGGACTATTAAAACTGTATATTTCTGAAGTGTAATATAATGGCATTGTTCATAAGGACCACTAAAGGAAAAAGTGAAGAGAACATGGAGAAGAGGagcttttttccctcctctgtCATGCCTTAACTAAAACAGGGTTAgctttataaacatatataagtGGAAgtgttgtaaatgtaatttaacagCAATAAAACTAACATGCCTTTTTGTTTCTAAagtatttttaaaggaaaatatcactttgtgtatttatacatcCTAATCCCTGtattgttggaaaaaaaaattcttagacAATCTAACAAGTTTCCTTTTTTATATCTTTGGGGTGGGAAAAATACATTAAACCCCTTTTTGATAAACCAAGtctgcttttctttcattccttctaAACACCGTGACATTCCATCTCAGTTCAACAGGGGTTAAATATGTAAaaggacattttaaatattt
>XM_026922670.2
GTCTGCGCCATAATATAGATTACATTCCCACTTCCAGTTCACAGTCAGTGCCTGTCTGGAAGCCTGATGTATGGACTAACATTTCTAGAAGCCACAAATCAATAAGGTTCAGAACCACCTGGAGAACTCCAAGTACCACCTCCACCAAGCCCAGGCCCAGCAGGTCAAACAGTACCTGACTCTAGGCACCAAGCTTCCCGGCCAGGCCCACCCACACCCGGGCCAGGCCCTGGGCACAATGCCTGTCATGCGCAACGGCCATATGACACCTGTCAGCAACAACAGCACGCCTGGCAGCCCCGTCACCCTGTTCACCCTTGCCAATAGCCACGACACTGAGTTTCCAGTGGACGAAGTTATTGATGATCTTATTGGCTTTGAATCTGGGTTCAATGATGGGAGCTTGGAGTGTATGGAGCCTAGCatcataatgcaaaataatGTGGCCCTGAACAGCGGCATGCTGGAAGTCTATGGCGGTGACCAAGGTATGACTGCCTCTCATGGTGGACTGACACCCCCCTCATGCCCCACAAAGCTCTCTGTTAAAATGGAAGTCACAGAACACGACACCAGAGTCTTAGCAAAAGAGAGGCAGAAGAAAGACAATCACAATCTGATTGAAAGAAGGCGACGATACAACATTAACTACAGAATCAAAGAGCTTGGAACTCTGATACCGAAGTCCAATGACCCTGATATGCGCTGGAACAAAGGGACCATCCTCAAGGCCTCAGTGGAGTACATTAAGTGGCTGCAGAAAGAGCAGCAACATGCGCGAGAGCTGGAGAGCCGCCAGAAGAAGCTGGAGCAGGCTAACAGGAGACTGCTGCTCAGGATTCAGgaGTTAGAGATCCAAGCTCGTGCTCATGGTCTGCCTAGTAATCTGGGAGCAGCGGAGCTCTCATCTCACCTCatcaaacagcagcagcaggcacTTCCTGCTCCTGCGGTTACTCCTGGAGCACAGACTTCTCTCTACCCACAGGATGAGCTGAACGGCCCCGAGTACCTCCAGAGGAACTCCCTGTCTGCGCTCCATGCCAGAAATGAGGGCAACAGCAGCTCCTCTGGTGAGCATGCAGACACCTCTTCGACCACCTTCTCGGACCCGCTGTCGCACTTCACGGACTTCTTTAGTGCCACTCTGAAGGAGGAACAGCGGCTGGACGAGCTCCTCATGGAAGAGGCGCTGTCTCCGTTCGGGACTGACCCGCTGCTTTCAGCCACTTCGCCCAATGCCTCTAAGGGAAGCAGCCGCAGGAGCAGCTTTAGCACGGATGACAACGACGACCTTTGACCGCTGTTTTCCCACACTTCTGGACCTGGCGTATGTGACTGACCTGCAGCTTTTCTGCTAGACACAGGGACACATCTTCTATGTCTCCTGGAAAATCAGAAACATCAAAAAGGAGAGATGAACTGATATTGTGAAACTACTGTACAGCCTGCTGCGTCTGACGCACAGCCTTTACCGTAGACGCTTGTAACACTGGTCACACACATCACTGGACTATTAAAACTGTATATTTCTGAAGTGTAATATAATGGCATTGTTCATAAGGACCACTAAAGGAAAAAGTGAAGAGAACATGGAGAAGAGGagcttttttccctcctctgtCATGCCTTAACTAAAACAGGGTTAgctttataaacatatataagtGGAAgtgttgtaaatgtaatttaacagCAATAAAACTAACATGCCTTTTTGTTTCTAAagtatttttaaaggaaaatatcactttgtgtatttatacatcCTAATCCCTGtattgttggaaaaaaaaattcttagacAATCTAACAAGTTTCCTTTTTTATATCTTTGGGGTGGGAAAAATACATTAAACCCCTTTTTGATAAACCAAGtctgcttttctttcattccttctaAACACCGTGACATTCCATCTCAGTTCAACAGGGGTTAAATATGTAAaaggacattttaaa
>XM_034313020.1
CCATGGTGATCAAACCAACCAGATCAGTATTCTGATGGCTCTCTGTTTGAGGTGATTATCACACTAGGCCATAAAAGGGCAAGCCAGCCTCCCTGTTAATTAGGTCTTTTACTACACCCAGTCGGTTTATAAAGAGTGCTGGATAGGAGGGGAGAGTCACATCATATCCACTCAACAGATAACTTTAGCCTGGGATCCTACTAGAGTTCCTTGTCAGAGCTGCAGAGGACACGCGGGTTCTGAGAATGCCACATTTATCTGATTGTAGCTACTACATGATGCGAGACGGAGCCCAAGTTGCCAGTGTTCAGAACCACCTGGAGAACTCCAAGTACCACCTCCACCAAGCCCAGGCCCAGCAGGTCAAACAGTACCTGACTCTAGGCACCAAGCTTCCCGGCCAGGCCCACCCACACCCGGGCCAGGCCCTGGGCACAATGCCTGTCATGCGCAACGGCCATATGACACCTGTCAGCAACAACAGCACGCCTGGCAGCCCCGTCACCCTGTTCACCCTTGCCAATAGCCACGACACTGAGTTTCCAGTGGACGAAGTTATTGATGATCTTATTGGCTTTGAATCTGGGTTCAATGATGGGAGCTTGGAGTGTATGGAGCCTAGCatcataatgcaaaataatGTGGCCCTGAACAGCGGCATGCTGGAAGTCTATGGCGGTGACCAAGGTATGACTGCCTCTCATGGTGGACTGACACCCCCCTCATGCCCCACAAAGCTCTCTGTTAAAATGGAAGTCACAGAACACGACACCAGAGTCTTAGCAAAAGAGAGGCAGAAGAAAGACAATCACAATCTGATTGAAAGAAGGCGACGATACAACATTAACTACAGAATCAAAGAGCTTGGAACTCTGATACCGAAGTCCAATGACCCTGATATGCGCTGGAACAAAGGGACCATCCTCAAGGCCTCAGTGGAGTACATTAAGTGGCTGCAGAAAGAGCAGCAACATGCGCGAGAGCTGGAGAGCCGCCAGAAGAAGCTGGAGCAGGCTAACAGGAGACTGCTGCTCAGGATTCAGgaGTTAGAGATCCAAGCTCGTGCTCATGGTCTGCCTAGTAATCTGGGAGCAGCGGAGCTCTCATCTCACCTCatcaaacagcagcagcaggcacTTCCTGCTCCTGCGGTTACTCCTGGAGCACAGACTTCTCTCTACCCACAGGATGAGCTGAACGGCCCCGAGTACCTCCAGAGGAACTCCCTGTCTGCGCTCCATGCCAGAAATGAGGGCAACAGCAGCTCCTCTGGTGAGCATGCAGACACCTCTTCGACCACCTTCTCGGACCCGCTGTCGCACTTCACGGACTTCTTTAGTGCCACTCTGAAGGAGGAACAGCGGCTGGACGAGCTCCTCATGGAAGAGGCGCTGTCTCCGTTCGGGACTGACCCGCTGCTTTCAGCCACTTCGCCCAATGCCTCTAAGGGAAGCAGCCGCAGGAGCAGCTTTAGCACGGATGACAACGACGACCTTTGACCGCTGTTTTCCCACACTTCTGGACCTGGCGTATGTGACTGACCTGCAGCTTTTCTGCTAGACACAGGGACACATCTTCTATGTCTCCTGGAAAATCAGAAACATCAAAAAGGAGAGATGAACTGATATTGTGAAACTACTGTACAGCCTGCTGCGTCTGACGCACAGCCTTTACCGTAGACGCTTGTAACACTGGTCACACACATCACTGGACTATTAAAACTGTATATTTCTGAAGTGTAATATAATGGCATTGTTCATAAGGACCACTAAAGGAAAAAGTGAAGAGAACATGGAGAAGAGGagcttttttccctcctctgtCATGCCTTAACTAAAACAGGGTTAgctttataaacatatataagtGGAAgtgttgtaaatgtaatttaacagCAATAAAACTAACATGCCTTTTTGTTTCTAAagtatttttaaaggaaaatatcactttgtgtatttatacatcCTAATCCCTGtattgttggaaaaaaaaattcttagacAATCTAACAAGTTTCCTTTTTTATATCTTTGGGGTGGGAAAAATACATTAAACCCCTTTTTGATAAACCAAGtctgcttttctttcattccttctaAACACCGTGACATTCCATCTCAGTTCAACAGGGGTTAAATATGTAAaaggacattttaaat
>XM_034313021.1
CCATGGTGATCAAACCAACCAGATCAGTATTCTGATGGCTCTCTGTTTGAGGTGATTATCACACTAGGCCATAAAAGGGCAAGCCAGCCTCCCTGTTAATTAGGTCTTTTACTACACCCAGTCGGTTTATAAAGAGTGCTGGATAGGAGGGGAGAGTCACATCATATCCACTCAACAGATAACTTTAGCCTGGGATCCTACTAGAGTTCCTTGTCAGAGCTGCAGAGGACACGCGGGTTCTGAGAATGCCACATTTATCTGATTGTAGCTACTACATGATGCGAGACGGAGCCCAAGTTGCCAGTGTTCAGAACCACCTGGAGAACTCCAAGTACCACCTCCACCAAGCCCAGGCCCAGCAGGTCAAACAGTACCTGACTCTAGGCACCAAGCTTCCCGGCCAGGCCCACCCACACCCGGGCCAGGCCCTGGGCACAATGCCTGTCATGCGCAACGGCCATATGACACCTGTCAGCAACAACAGCACGCCTGGCAGCCCCGTCACCCTGTTCACCCTTGCCAATAGCCACGACACTGAGTTTCCAGTGGACGAAGTTATTGATGATCTTATTGGCTTTGAATCTGGGTTCAATGATGGGAGCTTGGAGTGTATGGAGCCTAGCatcataatgcaaaataatGTGGCCCTGAACAGCGGCATGCTGGAAGTCTATGGCGGTGACCAAGAACACGACACCAGAGTCTTAGCAAAAGAGAGGCAGAAGAAAGACAATCACAATCTGATTGAAAGAAGGCGACGATACAACATTAACTACAGAATCAAAGAGCTTGGAACTCTGATACCGAAGTCCAATGACCCTGATATGCGCTGGAACAAAGGGACCATCCTCAAGGCCTCAGTGGAGTACATTAAGTGGCTGCAGAAAGAGCAGCAACATGCGCGAGAGCTGGAGAGCCGCCAGAAGAAGCTGGAGCAGGCTAACAGGAGACTGCTGCTCAGGATTCAGgaGTTAGAGATCCAAGCTCGTGCTCATGGTCTGCCTAGTAATCTGGGAGCAGCGGAGCTCTCATCTCACCTCatcaaacagcagcagcaggcacTTCCTGCTCCTGCGGTTACTCCTGGAGCACAGACTTCTCTCTACCCACAGGATGAGCTGAACGGCCCCGAGTACCTCCAGAGGAACTCCCTGTCTGCGCTCCATGCCAGAAATGAGGGCAACAGCAGCTCCTCTGGTGAGCATGCAGACACCTCTTCGACCACCTTCTCGGACCCGCTGTCGCACTTCACGGACTTCTTTAGTGCCACTCTGAAGGAGGAACAGCGGCTGGACGAGCTCCTCATGGAAGAGGCGCTGTCTCCGTTCGGGACTGACCCGCTGCTTTCAGCCACTTCGCCCAATGCCTCTAAGGGAAGCAGCCGCAGGAGCAGCTTTAGCACGGATGACAACGACGACCTTTGACCGCTGTTTTCCCACACTTCTGGACCTGGCGTATGTGACTGACCTGCAGCTTTTCTGCTAGACACAGGGACACATCTTCTATGTCTCCTGGAAAATCAGAAACATCAAAAAGGAGAGATGAACTGATATTGTGAAACTACTGTACAGCCTGCTGCGTCTGACGCACAGCCTTTACCGTAGACGCTTGTAACACTGGTCACACACATCACTGGACTATTAAAACTGTATATTTCTGAAGTGTAATATAATGGCATTGTTCATAAGGACCACTAAAGGAAAAAGTGAAGAGAACATGGAGAAGAGGagcttttttccctcctctgtCATGCCTTAACTAAAACAGGGTTAgctttataaacatatataagtGGAAgtgttgtaaatgtaatttaacagCAATAAAACTAACATGCCTTTTTGTTTCTAAagtatttttaaaggaaaatatcactttgtgtatttatacatcCTAATCCCTGtattgttggaaaaaaaaattcttagacAATCTAACAAGTTTCCTTTTTTATATCTTTGGGGTGGGAAAAATACATTAAACCCCTTTTTGATAAACCAAGtctgcttttctttcattccttctaAACACCGTGACATTCCATCTCAGTTCAACAGGGGTTAAATATGTAAaaggacattttaaat

Function

symbol description
tfec Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within definitive hemopoiesis; hematopoietic stem cell homeostasis; and hematopoietic stem cell proliferation. Predicted to be active in nucleus. Is expressed in several structures, including extension; eye; immature eye; intermediate cell mass of mesoderm; and neural crest. Orthologous to human TFEC (transcription factor EC).

NR:

description
PREDICTED: transcription factor EC isoform X5

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K15591 TFEC; transcription factor EC

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922669.2 False 2069 mRNA 0.48 8 19095392 19107426
XM_026922670.2 False 1962 mRNA 0.48 8 19095397 19105351
XM_034313020.1 True 2162 mRNA 0.48 8 19095396 19103077
XM_034313021.1 False 2087 mRNA 0.48 8 19095396 19103077

Neighbor

gene id symbol gene type direction distance location
ppp1r3aa NA coding downstream 307495 18781747 ~ 18787897 (-)
gpr85 gpr85,LOC106576049,LOC107584006,LOC106609248 coding downstream 351230 18739775 ~ 18744162 (-)
tmem168a LOC108280006,LOC108425390,LOC103042505 coding downstream 419825 18665209 ~ 18675567 (-)
dock4b dock4b,LOC108279862,LOC108425388,LOC107656358,LOC106609220 coding downstream 501987 18484440 ~ 18593405 (-)
tnni4a zgc:101560,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC108425328,LOC107658770,LOC107584059 coding downstream 861653 18225500 ~ 18233739 (-)
lta4h lta4h,LOC107656327,LOC106576033 coding upstream 33019 19140445 ~ 19161281 (-)
cdk17 cdk17,LOC107656329,LOC107658862 coding upstream 83070 19190496 ~ 19247363 (-)
LOC117599463 NA coding upstream 145397 19252823 ~ 19254197 (-)
LOC117599464 NA coding upstream 153287 19260713 ~ 19262044 (-)
LOC117599574 NA coding upstream 164169 19271595 ~ 19272694 (-)
G284885 mdfic,LOC107095313,LOC106906624,LOC106523521 non-coding downstream 157297 18868057 ~ 18938095 (-)
LOC117599567 NA non-coding downstream 172495 18918396 ~ 18922897 (-)
G284882 NA non-coding downstream 233240 18861845 ~ 18862152 (-)
G284866 NA non-coding downstream 264253 18830925 ~ 18831139 (-)
G284862 NA non-coding downstream 272192 18819942 ~ 18823200 (-)
G285245 NA non-coding upstream 181165 19288591 ~ 19290806 (-)
LOC113532309 NA non-coding upstream 249134 19356560 ~ 19385863 (-)
G285287 NA non-coding upstream 297653 19405079 ~ 19405317 (-)
G285288 wnt7b,LOC107388424,LOC107549584,LOC108429451,LOC103028473 non-coding upstream 298477 19405903 ~ 19406128 (-)
G285289 wnt7b,wnt7ba,LOC107725526,LOC107664847 non-coding upstream 300844 19408270 ~ 19408805 (-)
LOC113532190 NA other downstream 347559 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 882999 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 883688 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 1002848 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 1004770 18090551 ~ 18090622 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 570857 19678283 ~ 19735232 (-)
G285607 NA other upstream 1205641 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 2353400 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 3378810 22486236 ~ 22489467 (-)

Expression


Co-expression Network