dclre1c (dclre1c,LOC108279967,LOC106595997)


Basic Information

Item Value
gene id dclre1c
gene name dclre1c,LOC108279967,LOC106595997
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 8301479 ~ 8311669 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922676.2
tctcATGGTTTCCTGGTATGGCGTGTGTTGGTGTTTCATGAGTTTGAACTGAAGAGTAAACGTGTGAAGGAGATGTTTTTGGAAAGTCAGAGTCTTCTAGCTCAGCATGAAGCTGTATAATCTGTATATGAAGCTAGGTGTTTAGGTTAGCTAAGCTGGGATTAGTGTGAGAAAGTCAGAATGAGTTCCTTCCCTGGACGGATGAAGGAATATCCAAACATCTCCATTGACAGATTTGACAGAGAAAATATACATGCCAGagcttattttctctctcactgtcataAAGATCATATGAAAGGATTGAAAGGACCTTTACTGAAGAGAAAATTAAAGTTTAGCTTGACTGTAAAGTTGTACTGCTCGTTTGTCACGAAGGAGCTCCTACTCAACAATCCAAAATATAGCTTCTGGGAAGACCGCATTGTTGCTCTTGAGTTAGACAGTCCCACACATATATCACTGACTGATGAACTTACAGGAGAGGTGGAAGATGTTGTTGTGACGTTGTTGCCGGCTGGGCATTGCCCTGGATCAGTCATGTTTCTCTTTGAGGGGGCTCAGGGCACCGTGCTGTACACTGGTGATTTCCGACTGGCTGCTGGAGACGCAGCGAGGATGGAGCACCTGCACTCTGGAAACAGAGTAAAAGACATTCAGAGTGTGTATTTGGACAGCACGTTCTACGACCCCAGGTTCTATCAGATCCCTAGCAGGGAGGCTTGTCTGACTGGTATCAGGAAGCTGGTTCATGACTGGATTTGTCTGAGTCCATACCACATAGTATGGTTGAACTGCAAAGCAGCATATGGTTATGAATACCTCTTCACCAACCTGGGGCAGGAATTTAATTCACAGGTCCATGTGAACAGATTGAATATGTTCAGACAAATGCCAGAAATCCTGGATCACGTGACCACAAATAGAGCAACACAGATCCACGCCTGCAGGCACCCTAAGGATGATGAGTTGTTCAGGACAAACAGACTGCCGTGTGGCTCTTTAGCTCCGGATGGTACACCATTGCGCATCATCAGCATCAAACCTTCCACTATGTGGTTTGGAGAACGAACTAGGAAGACCAACGTCATCGTCAAGATGGGTGGAAGCTCCTACAGGGCTTGTTTCTCTTTTCATTCCTCATACTCCGAGATCAAGGATTTCCTCTCCTACATCAGTCCTGTTAATATTTACCCTAATGTGGTTCCAATGGGCCGAACTGTGGAGGAAGTCACTGAGCTactGAATCTTATGTGTAGAAAACATTCAGGAAGGGCCGAGGTTGTCTATAAGCCTCTTGGGAAGCTGAAACGAGCCAGAATAAAGTCCACGTCTCAAGGCACGGACAGTGAGGACGAGCTGTTTGCGGAAGTTGCTGTAGCACCGATGAGAAAGAAGCTTGCTGTGAATGAGGAGAAAGAGCACCACAGCCCGGAAAAATCAGATCCCGAGGTCATAGAGACACAAATTCTACCACAGCTGCAGCCTTCATTTCAGACATCCAACTACATGGACTGCACAGAGtccaatgatgatgatgatgatggtgatgaagatgacgtggaggaggaggaacgTCCTGCATGTCAGTCATCTGGGGATGCTACACCCACTCCATCCTGCTTAGGTATGTCCCCACCCCCTCCGAAGCCGGCCCCGCCTAGCTGGAGTACATTCTTCACAGCAGAGCCAGTTGTGACTGATGACAGCTGTGAGCTGGAGAACAGTCAGAACAGCCAGACTCTGTCTACTGATCACACAACGTCGCAGTCCCCTGAGCTCTTCAATGATGACGATGAATCTGAGTCAGGTCATGTGACTTCCTCTCAGTCGACGTATGTATCAGAGGCAGCTTTAGAGAGCCTCAGCCAACTCGACACAGTGCCTGTACAATGTAACCCCATGCACACAGGGAACGGTTTTAATTGGCCGGATGACGCACAACCAGCTTTGACTGACAGTCACCAGGACCAATGCGATGTCACAGACCAAACAGAACCAGTTTCAGATTCGCAGGTGTCATCTGATTTTGATCTGCCAATGACTCCGGGCTCCAAGGCTCCTCAGCCTGAGGAGCTGAAGGAGCTGTACAGGAAGTTGGCTGCTGGAGAGGACGTGACCACCAAAAATCATCAGCAGGGTTCAGTTTAATCAGAGATTCCACGGCTGGAATGATCATCTTGCcaaattaacaaacaaaaatttgGATTctcataccaaaaaaaaaa

Function

symbol description
dclre1c Predicted to enable 5'-3' exodeoxyribonuclease activity and damaged DNA binding activity. Predicted to be involved in double-strand break repair via nonhomologous end joining; interstrand cross-link repair; and protection from non-homologous end joining at telomere. Predicted to act upstream of or within DNA recombination and DNA repair. Predicted to be located in nucleus. Predicted to be part of nonhomologous end joining complex. Human ortholog(s) of this gene implicated in Omenn syndrome; common variable immunodeficiency; severe combined immunodeficiency; and severe combined immunodeficiency with sensitivity to ionizing radiation. Orthologous to human DCLRE1C (DNA cross-link repair 1C).

NR:

description
PREDICTED: protein artemis

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006259 DNA metabolic process biological_process
GO:0004518 nuclease activity molecular_function

KEGG:

id description
K10887 DCLRE1C, ARTEMIS, SCIDA; DNA cross-link repair 1C protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922676.2 True 2228 mRNA 0.47 14 8301479 8311669

Neighbor

gene id symbol gene type direction distance location
cdnf cdnf,LOC107744152,LOC107726000,LOC107592258,LOC107656217,LOC107581044 coding downstream 10806 8283796 ~ 8290673 (-)
shank3b LOC108279923,LOC108428159 coding downstream 19600 8250112 ~ 8281879 (-)
tymp tymp,LOC104957567 coding downstream 53733 8239755 ~ 8247746 (-)
si:ch73-139j3.4 NA coding downstream 75358 8221552 ~ 8226121 (-)
c18h12orf66 c19h12orf66,cunh12orf66,LOC107592225,LOC107658829,LOC107726025,LOC107743608 coding downstream 186693 8103474 ~ 8114786 (-)
dmtf1 dmtf1,LOC106594134 coding upstream 11326 8322995 ~ 8334489 (-)
tspan9b tsn9,LOC108428166,LOC107658833,LOC107580843,LOC107656293,LOC107725884,LOC103041281 coding upstream 46641 8358310 ~ 8388357 (-)
mical3b mical3b,LOC108279684,LOC107726023,LOC107658814,LOC107656292,LOC107592209,LOC108428167 coding upstream 79009 8390678 ~ 8426378 (-)
svopl svopl,LOC107656247,LOC107725968,LOC107744112 coding upstream 117826 8429495 ~ 8439796 (-)
si:dkeyp-27e10.3 kiaa1549,LOC108279680 coding upstream 131540 8443209 ~ 8471894 (-)
G278920 NA non-coding downstream 61803 8238974 ~ 8239676 (-)
G278911 NA non-coding downstream 84186 8217013 ~ 8217293 (-)
G278520 NA non-coding downstream 422462 7796835 ~ 7879017 (-)
LOC117599592 NA non-coding downstream 767197 7530784 ~ 7534282 (-)
G278312 NA non-coding downstream 805216 7495572 ~ 7496263 (-)
G278963 NA non-coding upstream 77829 8389498 ~ 8390559 (-)
G279064 NA non-coding upstream 300449 8612118 ~ 8612342 (-)
LOC117599455 NA non-coding upstream 386761 8698430 ~ 8698791 (-)
LOC113532431 NA non-coding upstream 497551 8809220 ~ 8809338 (-)
G279382 NA non-coding upstream 881947 9193616 ~ 9194003 (-)
G278912 NA other downstream 81799 8218561 ~ 8219680 (-)
G278634 NA other downstream 233402 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 330908 7966819 ~ 7970571 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 801400 7421988 ~ 7500079 (-)
G277575 copg2,LOC108279806,LOC102787195 other downstream 2316915 5982292 ~ 5984564 (-)
G279415 NA other upstream 895682 9207351 ~ 9208563 (-)
cracr2ab LOC108280118 other upstream 1566812 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 1944303 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 2683436 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 2767499 11079168 ~ 11094176 (-)

Expression


Co-expression Network