LOC113531778 (trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107590972,LOC107710683)


Basic Information

Item Value
gene id LOC113531778
gene name trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107590972,LOC107710683
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12962716 ~ 13110214 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922677.2
tGTGAGCAAGTGTGTAGGCAGCTATGAGATCAgtagaggagaagagagagagaaagagacagtggggaagagagaaagagggaggagtGTCAAAGTGATAGAGACAGAAggggtgagagagacagagcgcaGTAGGGAACTACAGAAAGTCAGGGCGATAGAGacagaaggaagagagagacgcAGGTGAAGCTGATGAGCTAAAGGTAGCTGGGAACATGTGCATGCGAGCTCGCGGGATGCAGCACCGCGAAAACGAGCGCTAAACCGCGCGCGCTGATGTGGGCTCCAGTCGTGAGCGGGGGCGCGCGCTGATCACAGAACGCACACAGCTTTTCCCCCCCACGTGCTGCAGGCGGATGTGAGCGTTAAAGAGCGAGCGGCGGGGCCGAAGATTCAGGAGCAGCGCGAGCTGGAGGCAATGCTGCGTTAAGTTGAAGCGCTGTGACTCAAAGTTTTAATGGGGATTGAGGACCTGAGCATGAGGAATGGCCGGGCGCTGTCCGACCAGTGGGCTGACGGTGTGGTGGTGCGTCCCCGGACCActgaacaacacatcactgtGCACAAGAGACTTGTGCTTGCTTTCGCAATCTCCATCCTCACCCTCATTGTGGTGACAGCCATTGCTGTGATGCTGGGTGTCCGCTTTGAGAAATGCAGCGGTGGCAGTGAGAGAGTTGTTCTACCTGGTAATGGGTCCAATCAGTTGCAAGATGGAAATTCTGAGCATAAAGGGGAAGAGTTGCAGCCGTGGCGCCATTCACGCTTACCAGCCACACTACGCCCACGCCACTATGACCTCCAGCTTTCTGTGTACATGGACAATTATACCTTCTCTGGAAAGGTGAGCATCGAGTTTGAATGTGTGAACGCAACCAAGTTCATCGTGCTGCATGCGGACAGGCTGGATGTGGATAAGGTGGCTGTGTACTCAGATAATAAAAAACCAGGTGCAATGAGGATCCACCGGCAGTTCCACTATGCTCCCAACCAGGTCTATGTCATCACTTTGCACCGAGAAATGAAGCCACTCAGAACATACAAGCTCAACATCACATTTGAAGCTCAAATTGAAAACGAACTGTTGGGCTTCTTCCGCAGCTCATACCTGCTGCACGGAGAGAAAAGGTATCTCGCTGTGACCCAGTTCTCACCGACTCATGCAAGGAAGGCTTTCCCATGTTTTGATGAGCCAATCTACAAAGCCACCTTCACTGTAAGACTGAGGCATGATGCCTCCTACCAGTCCCTCTCTAACATGCCTACTGAGGCATCCAGCCTGGATGAGGATGGCTGGGTCACCAATCACTTTTACAGGACACCTCGCATGTCCACTTACTATCTGGCTTGGGCAGTATGCAACTTCACATACCGAGAGGCGATCACAGATAGCGGAGTTGTGATCCGGCTGTACGCTCGACCTGATGCTATTCAGAGCGGATCAGGAGATTATGCCCTGCAGATCACCAAAAGGCTTCTCAACTTCTACCAGAATTATTTCAAAGTAAAATACTCCCTGCCCAAACTAGatctcCTGGCTGTGCCAAAACACCCGTATGCAGCGATGGAGAACTGGGGTCTTAGTGTGTTTGTTGAGCAGAAGATTTTGCTGGATCCAGAAGTCTCATCTTTCTCCTACCAGATGGAGCTCACCATGGTGGTGGTGCATGAGATCTGCCACcagTGGTTTGGAGACCTTGTTACCCCAGTCTGGTGGGAAGACGTATGGCTCAAAGAGGGATTTGCTCATTTCTTCGAGTATGTTGGGACTGATTTCCTCTTCCCAAAGTGGAATATGGAGAAGCAGAGGTTCCTGACTGATGTTCTTCATGAGGTGATGCTACTGGATGGTTTGGCAAGTTCTCATCCCATCTCTCAGGAGGTTTTTGAAGCTGCTGACATTGACCGAGTTTTTGACTGGATTGCTTACAAAAAGGGAGCTGCACTGATCCGCATGTTGGCAAATGTCATGGGACAAGCTGTATTCCAGAAAGGCATCAATGACTATTTAATGACGCACATGTATGGAAATGCGGCAAGGGATGACTTGTGGAACAAGTTTTCAGAGGCCATGCAGACTGAAGGGAAAGACATCAACATAAAGGAAGTGATGGATGGGTGGACTCTACAAATGGGCTATCCCGTGGTCACCATCAGCAAAAATGAGAGCCTGGACAACATGGTGACCATCAACCAGGAACACTTCATCTATGACATGGAAGCCAAGATCAGCAACCCTGATTTTTTCAACAATAGtTTCCAGTGGCAGATCCCATTGACCCTAGCAGTGGGAAACGCCAGTCACATATCATCTGAGACTGTCATATGGGTCTCTAAAAGAACAGAGATGCACTCTGTGGGCCACATAGACGAGAAGATGTGGTTGCTGGGAAACATCAATCAAACAGGCTACTTCAGGGTGAACTATGACCTTCACAACTGGAGGCTCCTTATTCAGCAGTTGATGATCAACCCCACAATCATCTCTGTAGGCAATCGTGCTGGCCTGATTGACGACGTCTTCAACCTGGCCAGGGCTGGCTATCTCCCACAGAGCATCCCTCTGCAGATCATCTGTTACCTGTCTGAGGAGGATGAGTTTCTGCCCTGGCACGCTGCCAGTCGTGCGCTGTACCAACTCGACAAGCTGCTTGACCGCACCAAGGACTACAGCATCTTTAGCAGCTATGTATTGAGACAGGTTGAGCTGAAGTATCATAAGCTGGGCTGGCCAAGTGTGAATGCAGATGGTTCCTTCCTGCAGGCCACCTATCAGACTGAAGAGCTACAAAGGGCAGTGATTATGTTGGCCTGCAGTTTTGGGAATAAACACTGCCATCGGCAGGCTGTGTCCCTTGTGTCCGAGTGGATCTCGAGCAACAAGAACAGGATTCCCCCAAATGTACGGGACATTGTCTACTGCACGGGTGTCTCTCTGATGGATGAAGATGTATGGGAGTTTATCTGGATGAAGTTCCACTCCTCCATGGCCATCTCAGAGAAGAAAGTCCTGCTGGAGGCCCTAACCTGCAGTGACAACACTTACCTACTCAACAGACTGCTCAACTTGTCTCTAAGCTCAGATCTGGTGCCagatcaagatgtgattgacaTCATCATCCATGTTGGCCGCAACCCACATGGACGCCGTTTGGCATGGAGGTATTTCAGAGAAAAGTGGGACATATTAAACTCCAGGTATGGTGAGGCTTTATTTATGAACTCTAAATTAATCAGCGGTGTGACAGAGTTTCTCAACACAGAGAGCGAACTCAGCGAGCTGAAGGATTTCATCCAGATGAACAGTGGAGGAGCAGTATCTGCATTCACTCGAGCGTTGGAGATTGTCAAGGCTAATGTGAAATGGCACAATCTTTACAAGGAGCAGTTCTTCCAGTGGCTGAAGAAATCACCCAATGACTAATAATCCACCATGTTCATTATCTGTTAGCATGGAGTCTCTATCAAACATTTATAGACCATTAGCCATGGGAGAAgataaaagaacaataaaatatcatttttggaCCCTGATAATCTTTGTTTTTCCTGATAAagaaaagaccaggcaatggtGGAAATGAACATGGAATGGGTCAAATATGTGTTGCTACAAACAGAATCACTGTTAAATATTGCCTGGTGGTGTATATCTCAAGtgacattccattttttttctcttttctgtatATTCCTCAGATCTTCAAATCATACTTGTTTCATGCATGAAAACAATTTCCTCCCTCCAATGAATCGATTTTCAGAGTTAGTACCTGAGTCTTGGGATGCTCAGGACAAATTTCAACTTTTTTTGGACTGCAAATTGATACTAATCTGAATGTAGATAAGCACAAAATCAGCCAGCCTGACAATCAGTGATTTCAACTGAAATGGTCCAAAGAAAGGACAAAAGTGGGTGTTTGTTCCCTTTCTTCAAGCCATAGAAAGAAGGACAGAGGAGATCTGGGCAGCAGTCCATATTGGTGTATCGAATggttgtgtgtgtctcacatATATTGTATGTTAGTACTTGTTTTCTTCACACAAGGCCTCACCTTGTATATCTAGTGTAAATGCTAAATGGAAAGTAATCACTGTGTCAAAATGTTCATACACAATAGTTTATTACAGAGGAAATACTGAGAAGAAGAGCTGTAAGGTGTTGGAAATATCTAGAAATCAGACATTTACAAGTTGTAGATTTGGAGTGTTAGTTGGAATATGCTGTAAATTTGATGTCAGCCCAAATCCCTGATTGTTGCTCACTTGAAAATCACATGCTAACATGATGCATATGTTTACGGTGAGctaattacaattaaaatatcAGTTGTATAAGCA

Function

symbol description
trhde Predicted to enable metalloaminopeptidase activity; peptide binding activity; and zinc ion binding activity. Predicted to be involved in several processes, including peptide catabolic process; proteolysis; and regulation of blood pressure. Located in extracellular exosome.

GO: NA

KEGG:

id description
K01306 TRHDE; pyroglutamyl-peptidase II

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922677.2 True 4344 mRNA 0.47 20 12962716 13110214

Neighbor

gene id symbol gene type direction distance location
prl2 LOC108279639 coding downstream 143010 12809321 ~ 12819706 (-)
nuak1a nuak1,LOC107725508,LOC108439414,LOC107587153 coding downstream 159294 12787882 ~ 12803422 (-)
abcc9 abcc9,LOC107725580,LOC107729856 coding downstream 326300 12592087 ~ 12636416 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107729834,LOC107690420,LOC107587158 coding downstream 374036 12584837 ~ 12588680 (-)
LOC113532438 NA coding downstream 381653 12580923 ~ 12581063 (-)
tnni1d LOC108280151,LOC108427054,LOC107597014 coding upstream 78648 13188862 ~ 13198925 (-)
scyl2 scyl2,si:ch211-244b2.1,LOC107755162 coding upstream 166712 13276926 ~ 13304279 (-)
depdc4 depdc4,LOC108427048 coding upstream 194240 13304454 ~ 13310263 (-)
metap2a metap2,metap2a,LOC107689230,LOC107755160,LOC107597011 coding upstream 215187 13325401 ~ 13338373 (-)
vezt vezt coding upstream 234530 13344744 ~ 13374285 (-)
G281527 NA non-coding downstream 485087 12476264 ~ 12477629 (-)
G281510 LOC108279795,LOC108442313 non-coding downstream 503624 12457563 ~ 12459092 (-)
G281486 NA non-coding downstream 593451 12368959 ~ 12369265 (-)
G281455 NA non-coding downstream 708561 12251314 ~ 12254155 (-)
G281373 NA non-coding downstream 868657 12093857 ~ 12094059 (-)
LOC113532391 NA non-coding upstream 36068 13146282 ~ 13147358 (-)
G281964 NA non-coding upstream 58461 13168675 ~ 13210493 (-)
G281981 NA non-coding upstream 148938 13259152 ~ 13285718 (-)
G282006 NA non-coding upstream 209959 13320173 ~ 13373048 (-)
G282047 NA non-coding upstream 297399 13407613 ~ 13409326 (-)
dusp16 dusp16 other downstream 1209803 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 1302389 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 1374692 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 1703304 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 1868540 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 2029711 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 3290707 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 3728321 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 3848298 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 4868549 17978763 ~ 17988280 (-)

Expression


Co-expression Network