tspan33a (tspan33,tspan33a,LOC107725621,LOC107676927)


Basic Information

Item Value
gene id tspan33a
gene name tspan33,tspan33a,LOC107725621,LOC107676927
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 6845898 ~ 6862027 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922679.2
acacacacacacacacacacacacacttccggAAATCAGAAACACAGCAGTGAATGAGCAGAATGAGTTGGAAAATGTGCGCCTCTGGGCAAAGGCGCGTCTGTGAGCTCCTGAAACACCTCAGTGGCTGAAAGTCCCTGAGGACAAGTTCCACATTTCTCACTTCTTCTTAACCAGTGAAGTTTCAGGACCTGACAGAAGCCTCTTCCTCTCTCTAGAAGACTGCAGGGTTGATCATGGGGAGAAGAGGAGCAgcacagagagatgaagaatTCAGTTTTGTCAGTCCAGTCGTCAAatacttacttttcttctttaacACAATATTCTGGATTATCTCAGTGGTGCTGATGGCCATTGGTGTGTACGCCAGAATAAGTAAACACGAGACGGCGATGGCCTGTTTGACAGTGGACCCCTCCATCCTGCTGCTGATTGTTGGAGTTCTCATGTTTCTCCTCACGTTCTGCGGCTGTGTGGGTTCTCTCCGAGAGAACATCTGCCTCCTGCAGACGTTCTGCATCTGCTTGACTGTCATCTTTTTGCTGCAGTTGGTCGCTGGAATTTTGGGTTTTGTCTTTTCAGACAAGGTGCGCTATAAAGTGACAGAAATGATCAACAATGCAATCAAGCATTACAGAGATGATATGGACCTGCAGAACCTTATTGACTTTGGACAAAAAGAGTTTGCCTGCTGTGGTGGTATTTCTTTCATGGACTGGTCACAGAACATCTATTTCAACTGCACGGAGGAGAACCCGAGCAGAGAGCGCTGTGCCGTGCCCTTCTCCTGCTGCCTCATCTCTAAAGACGAGGCTCTAATAAACACTATGTGTGGACATGGCATGCAGAAGCTGGAGATGATGAAGGCCAGCGCTTTCATCAACACCAGTGGCTGCATTGACAAACTCGTCAACTGGATCCACAGCAACCTGTTTCTGCTGGGAGGCATAGCGCTGGGCCTTGCCATCCCTCAGCTGGTGGGAATCCTCCTCTCTCAGGTCCTGATTAACCAGATCCAAGATCAGATTAAACTTCAGGACTACACCTTGCAGCACCACTCGGACCCATGGAGCTGAACGTACTATTGCAAATGTGAAACAGCTCTGCCTCACACTCAGCACCGTGCCTCTTAGTACAATCGGTATGAAGCTAAGCTAAAcaacatacagtagatatatCTCTATATGACAGGCATGTCCAGAGGTTCTAGGGTTTTAGAAGAATGAAAACCACAAGTGATCATGATGTGTTATGAATGCTGTGGTTATTAGTTCGAAGGCCACCTGAATGATTgggtagggggaaaaaatcacctTTTCGTGTTCTAAGACAACAGATTTGGAAGctaatattaaaaatagatgaaaagaaaaactagCTTTTAGATCGGAGGTCCGAATTGCtgtattgtgatatttattcatttgcacTAGGAGAACTTTTCAATGACAGGCAGCACTAAATTTTCAGAATCTACCACTAAGTGTCTCCTACTGTTTCAAAGTTACTGATCCTTCCTTTCTACACATGGACAGCTAAAATCATCTGTGCAAACCGGTTACCTGTTTAcagaattatataattttatatcttCTTTATATGTATGTGTCTATGTGCATTCTTACTGCAAACttgcaaccttttttttattgtacatttcAGAGATGGGGCATTTTCTTCCAATATGGTGCCATTTTTGTCCTTAGGATATCTGTATATAAGGTCTAATGTGTTAGGCGACAAAGCTTTCATGTATACTTACACCACAtctgctttaaaaatgtatgtaaaatgtatcctatagaaaatattaaactttcTAATTGCAGTTCACATCCACAATGATGTTAGATCATGAAATGATTTTGCACCATTACTGttaattagtattaatataGGCCACTTTATCATCACTGACCTTCTTTGGAAATCACATTTATAGAAATAATCACACTTCTTACTATAAGTAGGAATGATAATCTGTAGGATGCAGGTCTTCTGATTTTACAGATGTGTCCAAAATGTTTATGATCAAGCTAGGGTGTATGATACTCAATGTATATTCCAGGGATGAAGTAGAAGTCTTGCGTTCTTTGAGTGAACTTTGAGTATGTCAATACACCTACTgggatgtttttgggaagtgggaggaaactagtgaactctgaggaaacccacacggacacaggAGAACATTCAAAACTTCTAATATTCACCAGAGCTTAGGATCTTACCCTGGAGCTGCGAGGGGGCAACGTTGCCTGCTACACCAATTGTACACACCAACTGTAAAACAGtataatattaatgaattatgtaattatttgtgTGCCCAGAAATAATACAAGTTCTTCCTGCAGTC

Function

symbol description
tspan33a Predicted to be involved in protein localization to plasma membrane and protein maturation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN33 (tetraspanin 33).
tspan33 Enables enzyme binding activity. Involved in pore complex assembly; protein localization to plasma membrane; and protein maturation. Located in plasma membrane. Part of pore complex.

NR:

description
PREDICTED: tetraspanin-33

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17346 TSPAN33; tetraspanin-33

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922679.2 True 2365 mRNA 0.42 8 6845898 6862027

Neighbor

gene id symbol gene type direction distance location
smo smo,LOC107725609,LOC107729864,LOC107690544 coding downstream 3874 6828753 ~ 6842024 (-)
cax1 LOC108279788,LOC108444418,LOC107725610,LOC107690555,LOC107729854,LOC107584270 coding downstream 18719 6808801 ~ 6827179 (-)
exoc4 exoc4,LOC107555552,LOC107585070,LOC107676929,LOC107690838,LOC107729851 coding downstream 529595 6166536 ~ 6316303 (-)
lrguk lrguk coding downstream 682012 6133559 ~ 6163886 (-)
trnam-cau_46 NA coding downstream 742751 6103076 ~ 6103147 (-)
nudt5 nudt5,LOC107658859,LOC107656337,LOC107726016,LOC107743836 coding upstream 1904 6863931 ~ 6869613 (-)
adipor2 adipor2 coding upstream 17502 6879529 ~ 6919689 (-)
wnt5b wnt5b,LOC108279752,LOC107656325,LOC107726030,LOC107572035,LOC107658849 coding upstream 64741 6926768 ~ 7035028 (-)
erc1b LOC108279753,LOC108442871 coding upstream 181390 7043417 ~ 7244470 (-)
ninj2 ninj2,LOC108279754,LOC108428107,LOC103036097,LOC107581271,LOC107743858,LOC107656339,LOC107725989 coding upstream 386839 7248866 ~ 7290391 (-)
G277881 NA non-coding downstream 54423 6791262 ~ 6791475 (-)
G277878 NA non-coding downstream 58427 6783659 ~ 6787471 (-)
G277567 NA non-coding downstream 848506 5960674 ~ 5997392 (-)
G277577 NA non-coding downstream 857554 5978950 ~ 5988344 (-)
G277500 NA non-coding downstream 1064727 5778002 ~ 5781171 (-)
G278225 NA non-coding upstream 15725 6877752 ~ 6878941 (-)
G278265 NA non-coding upstream 209719 7071746 ~ 7074585 (-)
G278275 NA non-coding upstream 366978 7229005 ~ 7229440 (-)
LOC117599447 NA non-coding upstream 552321 7414348 ~ 7416071 (-)
G278312 NA non-coding upstream 633545 7495572 ~ 7496263 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other downstream 840769 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other downstream 861334 5982292 ~ 5984564 (-)
tmpoa LOC108279628 other downstream 1861583 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 2106899 4734931 ~ 4738999 (-)
LOC117599578 LOC108279645 other downstream 2363333 4466061 ~ 4482565 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 559961 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 1104792 7966819 ~ 7970571 (-)
G278634 NA other upstream 1191061 8053088 ~ 8068077 (-)
G278912 NA other upstream 1356534 8218561 ~ 8219680 (-)
G279415 NA other upstream 2345324 9207351 ~ 9208563 (-)

Expression


Co-expression Network