tmem19 (tmem19,LOC102798963,LOC106594838)


Basic Information

Item Value
gene id tmem19
gene name tmem19,LOC102798963,LOC106594838
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10931347 ~ 10940102 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922686.2
GTAGGTGGCAGTAGAGTGCTACTGTAACTGACAGGAAAGCAGTAGAAGAAGAACAGTACGCTATATGAATAGATGTGTGCTGTAATCACAATGAGAGTTTCGTGTTATATCTATTTAATGAAAGTTTCTAGCTTTTAACATGGAACAAGCACCACAGCAGCAGCACGGTTTCCTCTACTGCAGCTGCACCTCTCAAAAGGAGTAACACGTTTTGTGGATGACAAACTGCTAAAGAAGTTTGTCAAGATGATGACTGATCTCATAGTGTTGTGTTTCACTTTGGCCATCTCCTTGTCCTTTTGGATCATATCCATAGCTATCAGCACTTACTCCGGTACATTGCAGCCTGTGTCTCCATGGCGATGGCTGTTCTCAGTTCTGGTCCCGCTTATTATCACGTCTCGCGCTTTCAAGAAAAAGAGTCTCGATTTTGGTGGTTGTTTGGGAGCATTACTGGTTGGTTTTATTCTCACCTTGGCCAACATGAGCTTCCTGGCAGCTTTGTTTGCTTTCTTCATCACCTCCAGCAAACTGACACGATGGAAGGGTGCGGTCAAGAAACGCATCGACTCAGAATATAAAGAAGGTGGCCAGAGGAACTGGATACAGGTTTTCTGTAATGGAGGTGTGCCGACAGAGCTAGCTTTGCTATACATGATAGAAGTCGGTCCAGGAGAGATGCCTGTAGATTTTACGGTGCAATACTCCGCATCGTGGATGTGCTTGTCACTCCTGGGAGCTTTGGCCTGCAGTACGGGTGACACCTGGGCTTCAGAAGTAGGTCCTGTTCTCAGTAAGAGCCAACCCAGGCTCATTACCACATGGAAGGAAGTCCCAGCAGGTACCAATGGAGGAGTGACCATCGTTGGTCTTGTAGCTAGCTTGCTTGGTGGAGCCACTGTGGGCGTGGCTTACTTCATTTCTCAGCTCCTGATGGTTAGCGATCTGCATTTGGCAGCCCCTCAGTGGCCTATTGTCGTGTATGGTGCTGTGGCGGGCTTCCTCGGCTCATTGCTTGACTCTTTGCTGGGTGCAGTCATGCAATATTCAGGCTATGATGAAAGCACTGGGAAGGTTGTCAACTTTGAGTCACCAAAAGTAAAGTGGATATGTGGGAAACCTATTTTGGATAACAATGGTGTAAACCTCTTCTCCTCAGTCCTCATAGCTCTGATCCTGCCAGGAATTGCATGGGGCGTCTGGCCCACGCGCTGATCCACTAAAGGCGACCATGCACAACTGCAACTGGATTTGCAACAAATGTGCTTGCAAGCCATTTACATGCCACTAGCtagaatgtttttaatttggGATCATTATGGACCTAACCTGGAGATTAAATCTTTAGATCAAAATCCATCTGTGATGATTTACTGTGAATGTTCAGTGTTGTTACTGTTTTAGTGATTcttattaaagattttttaaaagacattttt
>XM_034313018.1
ACACTGAAAGACacagtggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagacacagacagagttCACACTGAAAGACACAGTGGCTTGTGTGCTGTGCAGCAGCTGCACCTCTCAAAAGGAGTAACACGTTTTGTGGATGACAAACTGCTAAAGAAGTTTGTCAAGATGATGACTGATCTCATAGTGTTGTGTTTCACTTTGGCCATCTCCTTGTCCTTTTGGATCATATCCATAGCTATCAGCACTTACTCCGGTACATTGCAGCCTGTGTCTCCATGGCGATGGCTGTTCTCAGTTCTGGTCCCGCTTATTATCACGTCTCGCGCTTTCAAGAAAAAGAGTCTCGATTTTGGTGGTTGTTTGGGAGCATTACTGGTTGGTTTTATTCTCACCTTGGCCAACATGAGCTTCCTGGCAGCTTTGTTTGCTTTCTTCATCACCTCCAGCAAACTGACACGATGGAAGGGTGCGGTCAAGAAACGCATCGACTCAGAATATAAAGAAGGTGGCCAGAGGAACTGGATACAGGTTTTCTGTAATGGAGGTGTGCCGACAGAGCTAGCTTTGCTATACATGATAGAAGTCGGTCCAGGAGAGATGCCTGTAGATTTTACGGTGCAATACTCCGCATCGTGGATGTGCTTGTCACTCCTGGGAGCTTTGGCCTGCAGTACGGGTGACACCTGGGCTTCAGAAGTAGGTCCTGTTCTCAGTAAGAGCCAACCCAGGCTCATTACCACATGGAAGGAAGTCCCAGCAGGTACCAATGGAGGAGTGACCATCGTTGGTCTTGTAGCTAGCTTGCTTGGTGGAGCCACTGTGGGCGTGGCTTACTTCATTTCTCAGCTCCTGATGGTTAGCGATCTGCATTTGGCAGCCCCTCAGTGGCCTATTGTCGTGTATGGTGCTGTGGCGGGCTTCCTCGGCTCATTGCTTGACTCTTTGCTGGGTGCAGTCATGCAATATTCAGGCTATGATGAAAGCACTGGGAAGGTTGTCAACTTTGAGTCACCAAAAGTAAAGTGGATATGTGGGAAACCTATTTTGGATAACAATGGTGTAAACCTCTTCTCCTCAGTCCTCATAGCTCTGATCCTGCCAGGAATTGCATGGGGCGTCTGGCCCACGCGCTGATCCACTAAAGGCGACCATGCACAACTGCAACTGGATTTGCAACAAATGTGCTTGCAAGCCATTTACATGCCACTAGCtagaatgtttttaatttggGATCATTATGGACCTAACCTGGAGATTAAATCTTTAGATCAAAATCCATCTGTGATGATTTACTGTGAATGTTCAGTGTTGTTACTGTTTTAGTGATTcttattaaagattttttaaaagacattttt

Function

symbol description
tmem19 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM19 (transmembrane protein 19).

NR:

description
PREDICTED: transmembrane protein 19

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922686.2 True 1439 mRNA 0.46 7 10931347 10940102
XM_034313018.1 False 1376 mRNA 0.47 7 10931347 10939347

Neighbor

gene id symbol gene type direction distance location
rab21 rab21,zgc:154045,LOC106609839,LOC107690748 coding downstream 2931 10913634 ~ 10928416 (-)
ptprr ptprr coding downstream 45911 10830886 ~ 10885436 (-)
ptprb ptprb,LOC107562139 coding downstream 102962 10784328 ~ 10828385 (-)
LOC113532144 best3 coding downstream 301584 10618918 ~ 10629763 (-)
slc13a4 slc13a4,LOC107656439 coding downstream 383006 10532781 ~ 10548341 (-)
LOC113532419 lgr5 coding upstream 1016 10941118 ~ 10974696 (-)
msgn1 msgn1 coding upstream 68240 11008342 ~ 11009632 (-)
LOC113531821 gen1 coding upstream 72117 11012219 ~ 11028405 (-)
agbl5 agbl5 coding upstream 94982 11035084 ~ 11050606 (-)
tmem214 tmem214,LOC104961504,LOC106608390 coding upstream 113094 11053196 ~ 11065947 (-)
G280652 NA non-coding downstream 367 10930738 ~ 10930980 (-)
G280640 NA non-coding downstream 22717 10906173 ~ 10908630 (-)
G280615 NA non-coding downstream 147054 10783361 ~ 10784293 (-)
G280527 NA non-coding downstream 153450 10776763 ~ 10777897 (-)
G280360 NA non-coding downstream 460972 10468686 ~ 10470375 (-)
G280812 NA non-coding upstream 229784 11169886 ~ 11172446 (-)
G280817 NA non-coding upstream 239829 11179931 ~ 11182051 (-)
G280818 NA non-coding upstream 242964 11183066 ~ 11184143 (-)
G280841 NA non-coding upstream 319689 11259791 ~ 11259991 (-)
G281021 NA non-coding upstream 419260 11359362 ~ 11359636 (-)
LOC113532274 NA other downstream 635149 10255972 ~ 10296198 (-)
cracr2ab LOC108280118 other downstream 1038961 9878481 ~ 9892386 (-)
G279415 NA other downstream 1722784 9207351 ~ 9208563 (-)
G278912 NA other downstream 2711667 8218561 ~ 8219680 (-)
G278634 NA other downstream 2863270 8053088 ~ 8068077 (-)
si:ch211-51e12.7 LOC108280090 other upstream 55003 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 139066 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 298833 11238935 ~ 11259412 (-)
G281074 rad51ap1 other upstream 646202 11586304 ~ 11588024 (-)
G281092 mansc1 other upstream 717788 11657890 ~ 11660327 (-)

Expression


Co-expression Network