metap2a (metap2,metap2a,LOC107689230,LOC107755160,LOC107597011)



Basic Information


Item Value
gene id metap2a
gene name metap2,metap2a,LOC107689230,LOC107755160,LOC107597011
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 13325401 ~ 13338373 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026922690.2
tctctctctctctctctctctctctccatcatgcAGCACTCAGGAATGGAGCTGTTGTTACCGGCGGAGCGATGCGCGGATGAAGCGCTCGTGAACGGGGATGCGACAGAGCACGCGGAGTCCGACCCTgctaagaaaaagaagaaaaaaaagagaaagaagagcaaAGCTGCGGTTTGGGCAGGACAAGCTGAACCAGGGGAGGATGGAGTTGTTGAGGACATGAGGAAGTCACTAGAGCAGCAGAGcttggaggaaagagagagagaagaggacgGAGAAGAAGATGGAGAAGATGGAGACAGTtccactgggaaaaaaaagaagaagaaggcaaaGAAAAAGTGTGGCCCTAAAACACAGACTGATCCTCCCTCTGTGCCGATATGTGAGCTTTATCCAAATGGAGTGTTTCCTGTTGGAGAGGAGTGTGAATATCCTTCCTCACAGGATGGGCGGAGTGCTGCATGGCGGATGAGCAGTGAGGGTAAGCGTGTTCTAGACGAAGCCAGGGAGGACATGTGGAATGATTTTCGGCAGGCCGCGGAGGCGCATCGGCAGGTACGACAATACGTGAAGAGCTGGATCAAACCGGGTCTGACCATGATAGACATCTGTGAGCGTCTGGAGGAGTGCAGTAGGAAGCTGATTAAGGAGAATGGACTGAAAGCGGGTTTGGCTTTTCCCACCGGCTGCTCTCTCAATAACTGCGCTGCTCATTACACACCCAACACCGGAGACCCCACTGTGCTGAAGTATGACGACGTGTGCAAGATCGACTTTGGCACACACATCAAcgGGAGGATTATTGACTGTGCCTTTACTGTCACTTTTAATCCAAAGTATGACCGCCTCCTTGAGGCTGTAAAAGATGCCACCGACACCGGAATCAAGTGTGCAGGCATTGACGTGCGTCTCTGTGATGTTGGAGAGTCCATACAGGAAGTGATGGAGTCCTATGAGGTGGAGTTAGATGGGAAAACATACCAAGtTAAGCCAATCCGCAACCTGAATGGTCACTCCATTGGCCAGTACCGGATTCATGCTGGCAAAACAGTTCCTATTGTGAAGGGCGGCGAAGCCACCAGAATGGAGgaAGGCGAGGTGTATGCTATCGAGACGTTTGGCAGTACAGGGAAGGGAGTTGTGCACGATGACATGGACTGTTCACACTACATGAAGAACTTTGACGTAGGACACGTACCAATCAGGCTACCAAGAGCCAAACACTTGCTGAACGTAGTGAACGAGAACTTCGGCACGCTGGCGTTCTGTCGCCGCTGGCTGGACCGGCTTGGTGAGAGCAAGTACCTGATGGCACTGAAGAACCTATGTGACCTGGGCATCATTGACCCCTACCCTCCACTCTGTGATACCAAGGGTTCTTACACAGCTCAATACGAACACACCATTCTGCTCAGGCCCACGTGCAAGGAGGTGGTGAGCCGAGGAGACGACTTCTGACTCGCACCCACGCGTAGATTGTTCGATACAATAGAAACCACACAGTCCAAGTGGGACACATTAATAATAGGAAAGTATTAACTAACTGGCTGGAGCAGTGGATGCTACAACCTTTTGCATGAAAAGCtatatgaattatgaattgTAAACTATGCAGGAGGACAGACAGGCTTCTGTAGCTGCTGTCCTGGGCCTTGTTTCTCCAAACACTCCGTGATCTTTCTAAGACTATGACAAATCTGCGTATCAGGAATAGGTGAATGGATTCAGGCATCTCTGTATTGGTAAAATCTGATCTAGCACACAGAGCTCTGTTATTACTGATGTTCTATTATTCAGAGACATTGTGATTT

Function


symbol description
metap2a Predicted to enable metal ion binding activity and metalloaminopeptidase activity. Predicted to be involved in protein initiator methionine removal. Predicted to act upstream of or within proteolysis. Predicted to be located in cytoplasm. Is expressed in myotome and somite. Orthologous to human METAP2 (methionyl aminopeptidase 2).
metap2 Enables aminopeptidase activity and metalloexopeptidase activity. Involved in N-terminal protein amino acid modification; peptidyl-methionine modification; and protein processing. Located in cytosol and plasma membrane.

NR:

description
PREDICTED: methionine aminopeptidase 2

GO:

id name namespace
GO:0070084 protein initiator methionine removal biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0070006 metalloaminopeptidase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01265 map; methionyl aminopeptidase

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026922690.2 True 1817 mRNA 0.50 11 13325401 13338373

Neighbor


gene id symbol gene type direction distance location
depdc4 depdc4,LOC108427048 coding downstream 15138 13304454 ~ 13310263 (-)
scyl2 scyl2,si:ch211-244b2.1,LOC107755162 coding downstream 21122 13276926 ~ 13304279 (-)
tnni1d LOC108280151,LOC108427054,LOC107597014 coding downstream 126476 13188862 ~ 13198925 (-)
LOC113531778 trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107590972,LOC107710683 coding downstream 215187 12962716 ~ 13110214 (-)
prl2 LOC108279639 coding downstream 505695 12809321 ~ 12819706 (-)
vezt vezt coding upstream 6371 13344744 ~ 13374285 (-)
lamb1b LOC108279853 coding upstream 127829 13466202 ~ 13501821 (-)
acot18 LOC108279984,LOC108261735 coding upstream 170859 13509232 ~ 13522323 (-)
LOC113532074 NA coding upstream 194546 13532919 ~ 13549503 (-)
prkcq prkcq,LOC107748461,LOC107555829,LOC107675981 coding upstream 282924 13621297 ~ 13648197 (-)
G281981 NA non-coding downstream 39683 13259152 ~ 13285718 (-)
G281964 NA non-coding downstream 114908 13168675 ~ 13210493 (-)
LOC113532391 NA non-coding downstream 178043 13146282 ~ 13147358 (-)
G281527 NA non-coding downstream 847772 12476264 ~ 12477629 (-)
G281510 LOC108279795,LOC108442313 non-coding downstream 866309 12457563 ~ 12459092 (-)
G282047 NA non-coding upstream 69240 13407613 ~ 13409326 (-)
G282060 NA non-coding upstream 89284 13427657 ~ 13427872 (-)
G282116 rbm17,LOC107755150,LOC107748463 non-coding upstream 220886 13559259 ~ 13563946 (-)
LOC117599591 NA non-coding upstream 233427 13571800 ~ 13575375 (-)
G282279 itih2,LOC107555817 non-coding upstream 494875 13833248 ~ 13837431 (-)
dusp16 dusp16 other downstream 1572488 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 1665074 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 1737377 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 2065989 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 2231225 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 1801552 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 3062548 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 3500162 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 3620139 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 4640390 17978763 ~ 17988280 (-)

Expression



Co-expression Network