tspan12 (tspan12,LOC107592202,LOC107656244,LOC107565667,LOC107658802)


Basic Information

Item Value
gene id tspan12
gene name tspan12,LOC107592202,LOC107656244,LOC107565667,LOC107658802
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9167589 ~ 9188935 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922697.2
AGGCACTCAGTTCGCCTTTAGGACCCGGAGGCTGACACTcggggggggagagagagacagagacagagagagagagagagagagagagttctccCAAACTTCCCACATGCATGCACAAGTTAAACTGACAGAGCCTGCCCCAGACTGAGCAGAGTGAAGTCAGACAGTCAGCTCCCACAGCAGTCAGCTGCAGTAAAGTGGAGTCCACAGCGCGTGCAGCTCACTCTGGGACCTTCCTATACTTCAGCGCTGCTTATTTCCACTAAATAAGGCACTGAAATGAAAGAGGATTATTAACCCCACTGCAGCATGGCACTTCTGTTCAAATGGCTCTGGGATTGTTTTTCGTCATAAGTGCCCATTCGCGCGAGCATCCGCCATCCTGAGGCACGAGGAAGCAGCAAAAGCAGCGAAACCACCTGTTGCAAATGCTTTCAGGGAGAAAGAGAAGCCTTCCCACggatataacacacacactgacacacactgagcgCTGCACGTGCTAACACAGCGCCCACGGATCGCCACCGTTATCTTTTAATCGGTTTCTGACAAGCCATGTGACTGCCAAAGGAGTGTTTTTCTCCTTGCACTATTTcggctaaaaaaaacaaaaaaacaacaaatctgCCAGCGGATCGCGCGCGCGCACGGTGGCCAGCGTCAGAGCGGTAGAATGAGGAATGAGGCGCGTGCACGATGGCCCGAGAGGACTCGGTGAAGTGCCTGCGCTGTCTGCTTTACGCTATCAACTTACTCTTCTGGCTAATGGCCCTGTGTGTGCTGGGAGTGGCCGCGTGGCTTAGGGATTACCTGAACAATGTCCTCACCTTAACTGCGGACACCAGGCTGGAAGAAGCAGCGGTCCTCACATACTCCCCTGCGGTCCATCCTGTTGTCATCGCTGTGTGCTGTTTCTTAATCATCGTGGCCATGGTGGGCTACTGTGGCACGCTGAAATGCAATCTGCTGCTCCTCTCCTGGTACTTTGGCAGTCTGTTGGTGATCTTCTGTGTGGAGTTGGCCAGTGGTGTGTGGACATACGAGGAGccatCAGTGCAGAGGTCAGACATGATCAGCCTGAAGTCACGCATGCCCAACTACGGTCTGCAGCGCTACCAGTGGCTAACACACGCCTGGAACTCCTTTCAGACTGAGTTTAAATGCTGCGGCGTGATCTATTTCACCGATTGGCTCGAGATGACGGAGATGGAGTGGCCACCTGACTCCTGCTGCTCCAATCAGTATGCAGGCTGCGCTCGGCACGCCCACTACAGTGACCTGAGCGACCTCTATCAGGAGGGCTGCGGTCCCAAGATATACAGTTTCATCCGAGGCACGAAGCAGCTGCAGGTCCTTCGCTTCCTGGGTGTGTCTATAGGAGTGGCGCAGATCCTGGCCATGACGCTGACCCTCACGCTGCTCTGGGCGCTCTACTACGACCACAAGCCTCCCGATCCTACTCCACCtgacacaattacacacacacactgccttgcCGAGGAGTCCCAAAAACCTGGCCATGGGTACCTACGGACATCTGACACGTGGGCTAATGGACACAGCCAGTTTGAGATGGAGCAGCTCTCCTAGCAAACACTGTACGATACGAATGAACGGTCCAGTTTCATTACGATTGTGTACAGCCATCCATTGCCGTCGTTATGAAGAGTTATCAactctcctttttttctaaCATATCTAAAGCATGTGGAACTTCTTCTGTAGACTGGAACTGCAGCTCCAAAGGGGGTGAGGTAGCAGGGAATATACAGCACCCTATACAAGGATACACATTAGGACGCTGTAGAACACTCACCACGTACCCTTAAAAGCTCTACACACTCAAACTAAGTAACCAAAGAAGATTGTGGAGGCTAcgtgatttttttattcatatttttaccTGACATTTCGGGATTTAAAGGACTATAATCACTAGAAACGCACATAAACTTGGGTCTTAACTTGTTTTTTAAGGGTGTATTAATGAACTGCTAttctaagctttattttttttgatgtaCAAAAAAACTACATGTCTTAATTCACTAGCACTGTGATGTAAATTATAGAACAGTTCTAGTTTTAGACAATAAAATGTTACAGCGGTGGCTTTGCATAAGAAAAGTTGAACACAAGCTGTGCTTTTTAATTACGTAGCATGTACACTGAAGCATGTGTGTGAATTACAGTGCATTTAACAATCAGAA
>XM_034313077.1
CACTTCTTGCAGTTTTGCCGGAAAGCCCGAGCACGGCAGCAGGTGGTCGACGGGCCGCTCGCGTTACACCACTATGGGACGCCTAAAGATGCAAGCATGCTTCACTTTCACCATCTGAGCTGCACATACTCAAACATCCCTGTCCTGCTTCCCAAGTCGAGCTGTAATGTTTAGAGATCTCATGCACTGCAGCATTAAACAGACCGAGAAGCTCAGGTTCTGTTTAAAACTCTCTGCTGTCGTCGTGATGGTTGTCATGATCTTTGCATTTCTAATCAAAAATCATCACTAAAAagttcaaaagtatttactaatctaggaAATCCAGAAGACCGGTACTCAAAACAGACCTTCTGGCAGGTTTAAGAGCTAATGGCCCTGTGTGTGCTGGGAGTGGCCGCGTGGCTTAGGGATTACCTGAACAATGTCCTCACCTTAACTGCGGACACCAGGCTGGAAGAAGCAGCGGTCCTCACATACTCCCCTGCGGTCCATCCTGTTGTCATCGCTGTGTGCTGTTTCTTAATCATCGTGGCCATGGTGGGCTACTGTGGCACGCTGAAATGCAATCTGCTGCTCCTCTCCTGGTACTTTGGCAGTCTGTTGGTGATCTTCTGTGTGGAGTTGGCCAGTGGTGTGTGGACATACGAGGAGccatCAGTGCAGAGGTCAGACATGATCAGCCTGAAGTCACGCATGCCCAACTACGGTCTGCAGCGCTACCAGTGGCTAACACACGCCTGGAACTCCTTTCAGACTGAGTTTAAATGCTGCGGCGTGATCTATTTCACCGATTGGCTCGAGATGACGGAGATGGAGTGGCCACCTGACTCCTGCTGCTCCAATCAGTATGCAGGCTGCGCTCGGCACGCCCACTACAGTGACCTGAGCGACCTCTATCAGGAGGGCTGCGGTCCCAAGATATACAGTTTCATCCGAGGCACGAAGCAGCTGCAGGTCCTTCGCTTCCTGGGTGTGTCTATAGGAGTGGCGCAGATCCTGGCCATGACGCTGACCCTCACGCTGCTCTGGGCGCTCTACTACGACCACAAGCCTCCCGATCCTACTCCACCtgacacaattacacacacacactgccttgcCGAGGAGTCCCAAAAACCTGGCCATGGGTACCTACGGACATCTGACACGTGGGCTAATGGACACAGCCAGTTTGAGATGGAGCAGCTCTCCTAGCAAACACTGTACGATACGAATGAACGGTCCAGTTTCATTACGATTGTGTACAGCCATCCATTGCCGTCGTTATGAAGAGTTATCAactctcctttttttctaaCATATCTAAAGCATGTGGAACTTCTTCTGTAGACTGGAACTGCAGCTCCAAAGGGGGTGAGGTAGCAGGGAATATACAGCACCCTATACAAGGATACACATTAGGACGCTGTAGAACACTCACCACGTACCCTTAAAAGCTCTACACACTCAAACTAAGTAACCAAAGAAGATTGTGGAGGCTAcgtgatttttttattcatatttttaccTGACATTTCGGGATTTAAAGGACTATAATCACTAGAAACGCACATAAACTTGGGTCTTAACTTGTTTTTTAAGGGTGTATTAATGAACTGCTAttctaagctttattttttttgatgtaCAAAAAAACTACATGTCTTAATTCACTAGCACTGTGATGTAAATTATAGAACAGTTCTAGTTTTAGACAATAAAATGTTACAGCGGTGGCTTTGCATAAGAAAAGTTGAACACAAGCTGTGCTTTTTAATTACGTAGCATGTACACTGAAGCATGTGTGTGAATTACAGTGCATTTAACAATCAGAA

Function

symbol description
tspan12 Predicted to be involved in several processes, including regulation of angiogenesis; regulation of vascular endothelial growth factor signaling pathway; and retina layer formation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in exudative vitreoretinopathy 5. Orthologous to human TSPAN12 (tetraspanin 12).

NR:

description
PREDICTED: tetraspanin-12-like

GO:

id name namespace
GO:0045765 regulation of angiogenesis biological_process
GO:0010842 retina layer formation biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0042813 Wnt-activated receptor activity molecular_function

KEGG:

id description
K17355 TSPAN12; tetraspanin-12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922697.2 True 2213 mRNA 0.49 7 9167589 9188935
XM_034313077.1 False 1817 mRNA 0.47 7 9167589 9188122

Neighbor

gene id symbol gene type direction distance location
hsp90b1 hsp90b1,LOC107656288,LOC107726017 coding downstream 533634 8626921 ~ 8633955 (-)
sbf1 sbf1 coding downstream 618961 8488152 ~ 8548628 (-)
parp12b LOC108279682,LOC108428170 coding downstream 685018 8473937 ~ 8482571 (-)
si:dkeyp-27e10.3 kiaa1549,LOC108279680 coding downstream 695695 8443209 ~ 8471894 (-)
svopl svopl,LOC107656247,LOC107725968,LOC107744112 coding downstream 727793 8429495 ~ 8439796 (-)
parietopsin LOC108279599 coding upstream 100160 9289095 ~ 9291409 (-)
LOC113532331 LOC108279597,LOC108279598,LOC105020203,LOC105912087 coding upstream 149833 9338768 ~ 9347046 (-)
LOC113531956 LOC108279597,LOC108279598 coding upstream 161943 9350878 ~ 9359050 (-)
mkln1 mkln1,LOC107754054,LOC107655615,LOC107560731,LOC107757245,LOC107587826 coding upstream 203094 9392029 ~ 9423268 (-)
asb13a.2 asb13a.2,LOC108280001,LOC108436004,LOC103022068,LOC107754063,LOC107560715,LOC107655562 coding upstream 370976 9559911 ~ 9593266 (-)
LOC113532431 NA non-coding downstream 358251 8809220 ~ 8809338 (-)
LOC117599455 NA non-coding downstream 468798 8698430 ~ 8698791 (-)
G279064 NA non-coding downstream 555247 8612118 ~ 8612342 (-)
G278963 NA non-coding downstream 777030 8389498 ~ 8390559 (-)
G278920 NA non-coding downstream 927913 8238974 ~ 8239676 (-)
G279382 NA non-coding upstream 4681 9193616 ~ 9194003 (-)
G279588 NA non-coding upstream 147401 9336336 ~ 9337530 (-)
G279592 NA non-coding upstream 197198 9386133 ~ 9389747 (-)
G279620 NA non-coding upstream 295158 9484093 ~ 9484948 (-)
G279621 NA non-coding upstream 296132 9485067 ~ 9485769 (-)
G278912 NA other downstream 947909 8218561 ~ 8219680 (-)
G278634 NA other downstream 1099512 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 1197018 7966819 ~ 7970571 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 1667510 7421988 ~ 7500079 (-)
G277575 copg2,LOC108279806,LOC102787195 other downstream 3183025 5982292 ~ 5984564 (-)
G279415 NA other upstream 18416 9207351 ~ 9208563 (-)
cracr2ab LOC108280118 other upstream 689546 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 1067037 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 1806170 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 1890233 11079168 ~ 11094176 (-)

Expression


Co-expression Network