gys2 (gys2,LOC107659841,LOC107694689)


Basic Information

Item Value
gene id gys2
gene name gys2,LOC107659841,LOC107694689
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4897270 ~ 4917780 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922701.2
AACAGCATCTGGAGTTCTTCCCATCATGCCCCTGACCAGGTCCGTGTCCATGAGCTCACTGAGCGGCCTTCCTCTGTGGGAGGAAGAGGAGTTACCCGTGGAGGATCTGCTGCTGTTTGAGATAGCATGGGAAGTCACCAACAAAGTGGGAGGAATTTACACCGTCATCCAGACCAAAGCTAAGACCACAGTGGATGAGTGGGGTGAGAACTTCTTCCTGATCGGCCCTTACTACGAACACAACTTCAAGACTCAGGTGGAGAAATGCGAACCTCCAAACGCCGCCGTGAAAGCAGCCATGGACTCCATCACCACCAACGGCTGTCAGgtgaacTTTGGCCGGTGGCTCATAGAAGGCAGCCCGTATGTGATCCTGTTTGATATCGGAGCTGCTGCCTGGAACCTGGACCGCTGGAAGGGAGACTTGTGGGACGCTTGTGGTATCGGACTGCCGTACCACGACCGAGAGGCCAATGACTCGCTCATCTTCGGCTCTCTCGTGGCCTGGTTCTTTAAAGAGTTAACAGATCGGCTTCAGGACAAACCCAAAGTCATCGCTCACTTCCACGAGTGGCAGTCAGGAGCCGGCCTCGTGCTCAGTCGCTCCCGTAAGATTCCCATGGCCACCATGTTTACTACACACGCTACACTTCTGGGTCGCTACCTGTGTGCTGGAAATGTGGACTTCTACAACAACCTGGATAAGtttgATATAGACCGGGAGGCAGGAGATAGGCAGATCTACCACCGCTACTGTCTGGAGAGAGCTGCAGTGCACTGCTCGCACGTTTTCACCACCGTCTCCCGGATCACAGCGGTGGAGGCCGACCACATGCTTCACAGGAAACCCGATGTGGTTACACCAAACGGTCTGAATGTAAAAAAGTTTTCAGCTATGCACGAGTTTCAGAACCTGCACTCGCTGAGCAAACTGAAGATCCAGGAGTTTGTGAGAGGACACTTCTACGGGCATCTGGACTTCAATCTGGAGAAAacacttttcttcttcatcGCAGGCCGGTACGAGTTTTCCAACAAGGGAGCCGATATCTTCCTGGAAGCGCTGTCCAGACTAAATTACCTGCTTCGGgtGCATAAGAGTGACGTGACCGTGGTGGTTTTCTTCATCATGCCGGCTAAGACTAACAACTTCAATGTGGAAAGTCTGAAAGGGCAAGCCGTGCGCAAGCAGCTGTGGGACACTGCGCAGTCGGTGAAGGAGAAGTTCGGCAAACGCTTGTATGAGGCCTTGTTAAGGGGCGAGATCCCAGACATGAGCAAGATCTTAGACAAAGACGACTTCACCATAATGAAGAGGGCCATTTACGCAACGCAGAGACACACTCTCCCTCCAGTGACCACTCACAACATGCTGGACGACTCGACGGACCCCATCCTGGGCAACATCCGCCGCATCGGCCTCTTCAACAGCCGCAACGACAGAGTCAAGATTGTTTTCCACCCCGAGTTCCTGTCCTCCACCAGCCCACTGCTGCCCATGGACTACGAGGAGTTCGTCCGCGGCTGCCATCTGGGAGTGTTTCCTTCTTATTACGAACCCTGGGGATACACACCAgGCGAGTGCACGGTGATGGGCATCCCGAGTGTGACCACTAACCTCTCTGGCTTCGGCTGCTTCATGGAGGAGCACATATCAGACCCGACTGCCTACGGGATTTATATCGTGGACCGGCGTTTCCGCTCAGCAGATGAGTCGTGTAATCAGCTCACTCAGTTCATGTTCACGTTCTGCCAGCAGTCACGACGGCAGCGTATCATCCAGCGCAACCGCACCGAGCGCCTGTCAGACCTGCTGGACTGGAGATACCTCGGCCGGTTCTACATGCACGCCAGACACCTGGCCCTCAGCAGAGCTTTTCCTGAACAATATAAAATCGACACACTCGCACTTCCACCGACTCAAGGATTCCGTTACCCCCGACCCTCCTCGGTCCCGCCCTCTCCCTCGGCCTCCCTCCACTCCACCCCGCATCACAGTGACGCCGAGGACGAGGACGAGGACGAAGACACGGACGAGCCCTACGATGAAGACGAGGAGGCCGAGAGGGACCGAGCGAACATCAAGTCGCCCTTCACTCCAAACGCCATACCAAAGGGTAAGAAGAAGCAACCGGGAGAGTATGGGAATTAGAGTTGCCCCCTCCCCCACTATATAATACCCCGCCCATTTTCACACTTTGCCCCTCCCACTTATTCATCTCAACCTCATTGAGAGACATTTTGGTTCATTAGTAGTATGAAGCAATATGATAATCATGAAGTCGtcgcatttctgatttttttttttttcattcagtctATAAAGATAACAGAAtaagttgagtgcaaaagtttgtgccccatGTGTTACAGGTGTTAAAGGAGGATGTacctctattttacaatttatctattaataaaaatgtgtgtatccATGCAGTAACAAGACTACAATCCAAAACATGCAAAATCACTTACATGAACTTTGACTTTTCGTAAAACTTTTCACGATCA

Function

symbol description
gys2 Predicted to enable glycogen (starch) synthase activity. Predicted to be involved in glycogen biosynthetic process and response to glucose. Predicted to be located in cortical actin cytoskeleton; cytosol; and ectoplasm. Predicted to be active in cytoplasm. Is expressed in liver and male organism. Human ortholog(s) of this gene implicated in glycogen storage disease. Orthologous to human GYS2 (glycogen synthase 2).

NR:

description
glycogen [starch] synthase, liver isoform X1

GO:

id name namespace
GO:0005978 glycogen biosynthetic process biological_process
GO:0009749 response to glucose biological_process
GO:0043265 ectoplasm cellular_component
GO:0005829 cytosol cellular_component
GO:0030864 cortical actin cytoskeleton cellular_component
GO:0004373 glycogen (starch) synthase activity molecular_function

KEGG:

id description
K00693 GYS; glycogen synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922701.2 True 2514 mRNA 0.52 16 4897270 4917780

Neighbor

gene id symbol gene type direction distance location
psmc2 psmc2,LOC103382982 coding downstream 104473 4784128 ~ 4792797 (-)
cd36 cd36 coding downstream 836756 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 951969 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 990617 3857515 ~ 3906653 (-)
orc5 orc5 coding downstream 1085654 3798341 ~ 3811616 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding upstream 7936 4925716 ~ 4938813 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 36511 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 70701 4988481 ~ 5003791 (-)
sox5 sox5,LOC107725540,LOC107590035,LOC107587062 coding upstream 163032 5080812 ~ 5315907 (-)
bcat1 bcat1,LOC107725514,LOC107659834,LOC107587341 coding upstream 421993 5339773 ~ 5361979 (-)
G276753 NA non-coding downstream 16262 4880418 ~ 4881008 (-)
G276761 NA non-coding downstream 20478 4817108 ~ 4876792 (-)
G276755 prdm4 non-coding downstream 52899 4801907 ~ 4844371 (-)
G276749 NA non-coding downstream 98113 4798659 ~ 4799157 (-)
LOC117599580 LOC108279645 non-coding downstream 310278 4586256 ~ 4586992 (-)
LOC113531850 NA non-coding upstream 25769 4943549 ~ 4945278 (-)
G276980 NA non-coding upstream 189100 5106880 ~ 5110968 (-)
G276985 NA non-coding upstream 206693 5124473 ~ 5125478 (-)
LOC117599571 NA non-coding upstream 398127 5315907 ~ 5326714 (-)
G277065 NA non-coding upstream 438120 5355900 ~ 5358204 (-)
G276650 LOC108279602 other downstream 158271 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 310174 4358625 ~ 4587096 (-)
LOC117599578 LOC108279645 other downstream 414705 4466061 ~ 4482565 (-)
LOC117599555 LOC108279645 other downstream 440149 4357539 ~ 4457121 (-)
tmpoa LOC108279628 other upstream 48452 4966232 ~ 4984315 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 1063358 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 1064512 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2504208 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 3049039 7966819 ~ 7970571 (-)

Expression


Co-expression Network