Item | Value |
---|---|
gene id | pcloa |
gene name | pclo,pcloa |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047612.1 |
NCBI id | CM018558.1 |
chromosome length | 23372418 |
location | 9629331 ~ 9698196 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
pcloa | Predicted to be a structural constituent of presynaptic active zone. Predicted to be involved in presynaptic active zone assembly and protein localization to synapse. Predicted to be located in cell projection; membrane; and synapse. Predicted to be active in several cellular components, including GABA-ergic synapse; cytoskeleton of presynaptic active zone; and glutamatergic synapse. Is expressed in brain; cerebellum; telencephalon; and torus longitudinalis. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 3. Orthologous to human PCLO (piccolo presynaptic cytomatrix protein). |
pclo | Predicted to enable several functions, including calcium-dependent phospholipid binding activity; profilin binding activity; and transcription corepressor binding activity. Predicted to be a structural constituent of presynaptic active zone. Predicted to be involved in several processes, including presynaptic active zone assembly; protein localization to synapse; and regulation of ubiquitin protein ligase activity. Predicted to act upstream of or within insulin secretion and regulation of exocytosis. Located in extracellular exosome. Implicated in pontocerebellar hypoplasia type 3. |
description |
---|
PREDICTED: protein piccolo isoform X1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026922718.2 | True | 13853 | mRNA | 0.48 | 26 | 9629331 | 9689041 |
XM_026922719.2 | False | 13832 | mRNA | 0.48 | 26 | 9629331 | 9689041 |
XM_026922720.2 | False | 13826 | mRNA | 0.48 | 25 | 9629331 | 9689041 |
XM_026922721.2 | False | 13784 | mRNA | 0.48 | 25 | 9629331 | 9689041 |
XM_026922722.2 | False | 13706 | mRNA | 0.48 | 25 | 9629331 | 9689041 |
XM_026922723.2 | False | 12814 | mRNA | 0.48 | 21 | 9637904 | 9689041 |
XM_026922725.2 | False | 12724 | mRNA | 0.48 | 20 | 9637904 | 9689041 |
XM_034313130.1 | False | 13664 | mRNA | 0.48 | 25 | 9629331 | 9689041 |
XM_034313131.1 | False | 13596 | mRNA | 0.47 | 26 | 9629331 | 9698196 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
ankrd16 | ankrd16 | coding | downstream | 5736 | 9617408 ~ 9623595 (-) |
trnay-gua_2 | NA | coding | downstream | 6712 | 9622533 ~ 9622619 (-) |
gdi2 | gdi2,LOC108279819,LOC108436005,LOC107754057,LOC107560733,LOC107694307 | coding | downstream | 14031 | 9600577 ~ 9615300 (-) |
asb13a.1 | LOC108279822,LOC108436003 | coding | downstream | 29296 | 9594458 ~ 9600035 (-) |
asb13a.2 | asb13a.2,LOC108280001,LOC108436004,LOC103022068,LOC107754063,LOC107560715,LOC107655562 | coding | downstream | 36065 | 9559911 ~ 9593266 (-) |
sema3aa | LOC108280003,LOC108436009,LOC103023715,LOC107562295,LOC107757236,LOC107560735,LOC107694310 | coding | upstream | 9254 | 9707450 ~ 9742678 (-) |
tspan11 | tspan11,LOC108279944,LOC107720401,LOC107593980,LOC107560736,LOC107694254,LOC108436010,LOC107690651 | coding | upstream | 57389 | 9755585 ~ 9854329 (-) |
ccdc59 | ccdc59 | coding | upstream | 196889 | 9895085 ~ 9897952 (-) |
pik3cg | pik3cg,LOC107656384,LOC107590535,LOC107658948,LOC107583938,LOC107705338 | coding | upstream | 309002 | 10007198 ~ 10015790 (-) |
lmod2b | lmod2,lmod2b,LOC108411152,LOC101068860,LOC103382826 | coding | upstream | 749469 | 10447665 ~ 10450902 (-) |
G279730 | NA | non-coding | downstream | 178 | 9627337 ~ 9629153 (-) |
G279728 | NA | non-coding | downstream | 4212 | 9624599 ~ 9625119 (-) |
G279641 | NA | non-coding | downstream | 95910 | 9533222 ~ 9533421 (-) |
G279625 | NA | non-coding | downstream | 109253 | 9519833 ~ 9520078 (-) |
G279624 | net1 | non-coding | downstream | 109604 | 9517986 ~ 9519727 (-) |
G279832 | NA | non-coding | upstream | 105982 | 9804178 ~ 9804403 (-) |
G279967 | NA | non-coding | upstream | 249135 | 9947331 ~ 9947536 (-) |
G280002 | NA | non-coding | upstream | 306145 | 10004341 ~ 10004812 (-) |
G280228 | NA | non-coding | upstream | 379890 | 10078086 ~ 10078356 (-) |
G280233 | NA | non-coding | upstream | 389653 | 10087849 ~ 10088120 (-) |
G279415 | NA | other | downstream | 420768 | 9207351 ~ 9208563 (-) |
G278912 | NA | other | downstream | 1409651 | 8218561 ~ 8219680 (-) |
G278634 | NA | other | downstream | 1561254 | 8053088 ~ 8068077 (-) |
avpr1ab | LOC108279517 | other | downstream | 1658760 | 7966819 ~ 7970571 (-) |
camk1da | camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 | other | downstream | 2129252 | 7421988 ~ 7500079 (-) |
cracr2ab | LOC108280118 | other | upstream | 180285 | 9878481 ~ 9892386 (-) |
LOC113532274 | NA | other | upstream | 557776 | 10255972 ~ 10296198 (-) |
si:ch211-51e12.7 | LOC108280090 | other | upstream | 1296909 | 10995105 ~ 11007143 (-) |
sobpb | LOC108279441 | other | upstream | 1380972 | 11079168 ~ 11094176 (-) |
vegfab | vegfa,LOC108435123 | other | upstream | 1540739 | 11238935 ~ 11259412 (-) |