parpbp (parpbp)


Basic Information

Item Value
gene id parpbp
gene name parpbp
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5464313 ~ 5487007 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922759.2
TAACGTGATTGGTTGAGCTGTGTTTTCATGTCGATTTAAATTTTCAGACGGCGTTCAGGTTGGAAATCACAGTGTCAGAGTTCAGAGCCGGACTTCTCCTTGTAAGCTGCATCAGTATTTCTGAAAGTGTGTTTCCCTCTCGGTTGGAAAAGCAGGAAAATGGGAATTGACCAGTTAAACCTAAAAGCCCTGATCAGAGTTTTTAGGAGAGAGTGTCACCGGGTTTTGGACTCGGAGAGGACCACAGTACATGGAGCGGACAGCATGCTGATGGTCCTCCAGCTGGCCGCTGCTGAGGTCCACAAGCAGGAAAGAGGAGAGTTCGGTGTGGCTTTGAGCGACGTGCTGGAGGCTTGGAAATGCTTGCTTCTGGACAAGCTCCACCTGTCCCGCGACGGCTCCCCACTCCCCGAGAATTATGAGCTCATCCGGAAAGAGTACGACGGCTTTTTGAAGCGCACCAACACGGTGGACCTGATTGATGTCTATAACATGTACGAGGAGCTGAAGCGGGATGAGGACCCCGAGGATCCCCTAACTGCATCGCAGATGTTCGACTTCCTGCTGGGCAGCACGGAGGACGCAGAAGAAGCTGAGACGATTCCTCAGGTTCCAGCTACGCCATCGAACCGGGTCAGAACCTGCAGCGCACAGGTGCAGCGAGCAGTCCGGAGGCTCTTTTGCTCATATATGTGTATGCTGGTGAACACGAAGAACGACTTGGCCCTCGCGCACACTTTGAACACCCCCAACCGCTGTCTAGGGCGCACAGCGTTTACTGACCTCAAACACGCAGCACGCAAAAGCAACACATCTCTATTTCTGGCAGCAACTTCGTTTATCCGGGCGATAGAGCTGGGTGGGAAAGGCTATGCCCCTCCGGAGTCTGACCCTTTAAGGAAGCACTTAAAGGGTTTGTCTCTGTTTGTCCATTTCATGGACCAACTGGAAGAGATCCTGGGAGAAACCCCTAACCCCAGTGCTGCTGGAGGCCGGATGGTGTCCAGCATTAGAGCGGTTCTCCTGAAGGGTCTCAGTAGCGCTGTTCCAGTGTACACCACTGTAGAAGACACGGTGAAGGACCTCAAGGAAAGAATCCACCAAATCCACACCCTTCAGAAAGAGTCCACTTGCGGCACAGGGATCAGTCCAGCCAGGCCCAGAACGTACGCCATCAATCACGCCACTGCCTATGCAGGCAGAGAGACTGTTAAAGTCCTGATCACGGTGTTGGATGAAGAAGCACTGGCGCCGCCCTGCAGGAACAAAGCACAACTGCTCACTGATGATCAGACTGTTCTGAATGAAGCTGAGCCCGTGTGTCTCCTCTCGCTCTACACATCTCCAGAGGTTCCCACAGGGCTCTCTCCAAAGCCCTTGTGCAAGCGCATCCAGAGCCAGCAAGAACACGTTAAGTCTAAGGTAAGGGAAAGAGGCATCCGTTCGCAGTTTGCCTGCACGTACATGGACGATGGTCTGCCTCTAAATCGTGTGCTGGACTTTCCCAGCACGAGTCAGCTCCCGACCTGTGTTCATCCTGCTCCTAAACAGACAGTCCCCTCAGCTGTTAATGCGCCCCATGAGGACGAGTTTGACCCTGCAGACAGATGCGAAAAACAAGTCGAGGTGGATCAACAGGCGGCGATTCTGGCCTGCCGTGGCTCAGGGACCAAACCAGCCCTCAAGCAACGCAACACCAACGGCCCAATCCGAACAGGTGTTTCAAGGAAAGGAGTGGCAGAACTCCAAACCATCACCAAAACTTCCAAGAGGAAGCTGTCAAACAGAGAGTGTGTGGAACAAGGAGGTGATGAGAACCAGCCGCCCCAGAAGAGACCTCCTGCCAAAGCCTGTAGCTCAGGGCCAGGGAAGAAGAGCGGCAGCATGGCTAGAAAGAAGCTCATTGCCGGTCAGGGCAAGCTTACAAGCTTTTTCCGGCTATGATTTAAAGCTTATATGGGATGCTTCATCATGACTTCTCATGTCCTCTCTAATCATGTCCTTCatctgagtgtgtgatgagtatAAATTAGAACTTTAGACATGCATGTGAAGACTTAGACAATTACTTTCTGATTAAACCCCTATGGGGATCGctatttaattaatgcattgAAAACCTTTACATGCAGTTTTATAACATAGGCATCAATCATTTCACAATGATCATGCattgttcagtttatttttagtcAAACAAGTGCATCATTTCtggttttaataaagttttatttaactgTACAACATTT
>XM_034313034.1
GAGTGACGTAGTTTAACGTGATTGGTTGAGCTGTGTTTTCATGTCGATTTAAATTTTCAGACGGCGTTCAGGTTGGAAATCACAGTGTCAGAGTTCAGAGCCGGACTTCTCCTTGTAAGCTGCATCAGTATTTCTGAAATTGGAAAAGCAGGAAAATGGGAATTGACCAGTTAAACCTAAAAGCCCTGATCAGAGTTTTTAGGAGAGAGTGTCACCGGGTTTTGGACTCGGAGAGGACCACAGTACATGGAGCGGACAGCATGCTGATGGTCCTCCAGCTGGCCGCTGCTGAGGTCCACAAGCAGGAAAGAGGAGAGTTCGGTGTGGCTTTGAGCGACGTGCTGGAGGCTTGGAAATGCTTGCTTCTGGACAAGCTCCACCTGTCCCGCGACGGCTCCCCACTCCCCGAGAATTATGAGCTCATCCGGAAAGAGTACGACGGCTTTTTGAAGCGCACCAACACGGTGGACCTGATTGATGTCTATAACATGTACGAGGAGCTGAAGCGGGATGAGGACCCCGAGGATCCCCTAACTGCATCGCAGATGTTCGACTTCCTGCTGGGCAGCACGGAGGACGCAGAAGAAGCTGAGACGATTCCTCAGGTTCCAGCTACGCCATCGAACCGGGTCAGAACCTGCAGCGCACAGGTGCAGCGAGCAGTCCGGAGGCTCTTTTGCTCATATATGTGTATGCTGGTGAACACGAAGAACGACTTGGCCCTCGCGCACACTTTGAACACCCCCAACCGCTGTCTAGGGCGCACAGCGTTTACTGACCTCAAACACGCAGCACGCAAAAGCAACACATCTCTATTTCTGGCAGCAACTTCGTTTATCCGGGCGATAGAGCTGGGTGGGAAAGGCTATGCCCCTCCGGAGTCTGACCCTTTAAGGAAGCACTTAAAGGGTTTGTCTCTGTTTGTCCATTTCATGGACCAACTGGAAGAGATCCTGGGAGAAACCCCTAACCCCAGTGCTGCTGGAGGCCGGATGGTGTCCAGCATTAGAGCGGTTCTCCTGAAGGGTCTCAGTAGCGCTGTTCCAGTGTACACCACTGTAGAAGACACGGTGAAGGACCTCAAGGAAAGAATCCACCAAATCCACACCCTTCAGAAAGAGTCCACTTGCGGCACAGGGATCAGTCCAGCCAGGCCCAGAACGTACGCCATCAATCACGCCACTGCCTATGCAGGCAGAGAGACTGTTAAAGTCCTGATCACGGTGTTGGATGAAGAAGCACTGGCGCCGCCCTGCAGGAACAAAGCACAACTGCTCACTGATGATCAGACTGTTCTGAATGAAGCTGAGCCCGTGTGTCTCCTCTCGCTCTACACATCTCCAGAGGTTCCCACAGGGCTCTCTCCAAAGCCCTTGTGCAAGCGCATCCAGAGCCAGCAAGAACACGTTAAGTCTAAGGTAAGGGAAAGAGGCATCCGTTCGCAGTTTGCCTGCACGTACATGGACGATGGTCTGCCTCTAAATCGTGTGCTGGACTTTCCCAGCACGAGTCAGCTCCCGACCTGTGTTCATCCTGCTCCTAAACAGACAGTCCCCTCAGCTGTTAATGCGCCCCATGAGGACGAGTTTGACCCTGCAGACAGATGCGAAAAACAAGTCGAGGTGGATCAACAGGCGGCGATTCTGGCCTGCCGTGGCTCAGGGACCAAACCAGCCCTCAAGCAACGCAACACCAACGGCCCAATCCGAACAGGTGTTTCAAGGAAAGGAGTGGCAGAACTCCAAACCATCACCAAAACTTCCAAGAGGAAGCTGTCAAACAGAGAGTGTGTGGAACAAGGAGGTGATGAGAACCAGCCGCCCCAGAAGAGACCTCCTGCCAAAGCCTGTAGCTCAGGGCCAGGGAAGAAGAGCGGCAGCATGGCTAGAAAGAAGCTCATTGCCGGTCAGGGCAAGCTTACAAGCTTTTTCCGGCTATGATTTAAAGCTTATATGGGATGCTTCATCATGACTTCTCATGTCCTCTCTAATCATGTCCTTCatctgagtgtgtgatgagtatAAATTAGAACTTTAGACATGCATGTGAAGACTTAGACAATTACTTTCTGATTAAACCCCTATGGGGATCGctatttaattaatgcattgAAAACCTTTACATGCAGTTTTATAACATAGGCATCAATCATTTCACAATGATCATGCattgttcagtttatttttagtcAAACAAGTGCATCATTTCtggttttaataaagttttatttaactgTACAACATTT
>XM_034313035.1
GCCAGAGTGACGTAGTTTAACGTGATTGGTTGAGCTGTGTTTTCATGTCGATTTAAATTTTCAGACGGCGTTCAGGTTGGAAATCACAGTGTCAGAGTTCAGAGCCGGACTTCTCCTTTTGGAAAAGCAGGAAAATGGGAATTGACCAGTTAAACCTAAAAGCCCTGATCAGAGTTTTTAGGAGAGAGTGTCACCGGGTTTTGGACTCGGAGAGGACCACAGTACATGGAGCGGACAGCATGCTGATGGTCCTCCAGCTGGCCGCTGCTGAGGTCCACAAGCAGGAAAGAGGAGAGTTCGGTGTGGCTTTGAGCGACGTGCTGGAGGCTTGGAAATGCTTGCTTCTGGACAAGCTCCACCTGTCCCGCGACGGCTCCCCACTCCCCGAGAATTATGAGCTCATCCGGAAAGAGTACGACGGCTTTTTGAAGCGCACCAACACGGTGGACCTGATTGATGTCTATAACATGTACGAGGAGCTGAAGCGGGATGAGGACCCCGAGGATCCCCTAACTGCATCGCAGATGTTCGACTTCCTGCTGGGCAGCACGGAGGACGCAGAAGAAGCTGAGACGATTCCTCAGGTTCCAGCTACGCCATCGAACCGGGTCAGAACCTGCAGCGCACAGGTGCAGCGAGCAGTCCGGAGGCTCTTTTGCTCATATATGTGTATGCTGGTGAACACGAAGAACGACTTGGCCCTCGCGCACACTTTGAACACCCCCAACCGCTGTCTAGGGCGCACAGCGTTTACTGACCTCAAACACGCAGCACGCAAAAGCAACACATCTCTATTTCTGGCAGCAACTTCGTTTATCCGGGCGATAGAGCTGGGTGGGAAAGGCTATGCCCCTCCGGAGTCTGACCCTTTAAGGAAGCACTTAAAGGGTTTGTCTCTGTTTGTCCATTTCATGGACCAACTGGAAGAGATCCTGGGAGAAACCCCTAACCCCAGTGCTGCTGGAGGCCGGATGGTGTCCAGCATTAGAGCGGTTCTCCTGAAGGGTCTCAGTAGCGCTGTTCCAGTGTACACCACTGTAGAAGACACGGTGAAGGACCTCAAGGAAAGAATCCACCAAATCCACACCCTTCAGAAAGAGTCCACTTGCGGCACAGGGATCAGTCCAGCCAGGCCCAGAACGTACGCCATCAATCACGCCACTGCCTATGCAGGCAGAGAGACTGTTAAAGTCCTGATCACGGTGTTGGATGAAGAAGCACTGGCGCCGCCCTGCAGGAACAAAGCACAACTGCTCACTGATGATCAGACTGTTCTGAATGAAGCTGAGCCCGTGTGTCTCCTCTCGCTCTACACATCTCCAGAGGTTCCCACAGGGCTCTCTCCAAAGCCCTTGTGCAAGCGCATCCAGAGCCAGCAAGAACACGTTAAGTCTAAGGTAAGGGAAAGAGGCATCCGTTCGCAGTTTGCCTGCACGTACATGGACGATGGTCTGCCTCTAAATCGTGTGCTGGACTTTCCCAGCACGAGTCAGCTCCCGACCTGTGTTCATCCTGCTCCTAAACAGACAGTCCCCTCAGCTGTTAATGCGCCCCATGAGGACGAGTTTGACCCTGCAGACAGATGCGAAAAACAAGTCGAGGTGGATCAACAGGCGGCGATTCTGGCCTGCCGTGGCTCAGGGACCAAACCAGCCCTCAAGCAACGCAACACCAACGGCCCAATCCGAACAGGTGTTTCAAGGAAAGGAGTGGCAGAACTCCAAACCATCACCAAAACTTCCAAGAGGAAGCTGTCAAACAGAGAGTGTGTGGAACAAGGAGGTGATGAGAACCAGCCGCCCCAGAAGAGACCTCCTGCCAAAGCCTGTAGCTCAGGGCCAGGGAAGAAGAGCGGCAGCATGGCTAGAAAGAAGCTCATTGCCGGTCAGGGCAAGCTTACAAGCTTTTTCCGGCTATGATTTAAAGCTTATATGGGATGCTTCATCATGACTTCTCATGTCCTCTCTAATCATGTCCTTCatctgagtgtgtgatgagtatAAATTAGAACTTTAGACATGCATGTGAAGACTTAGACAATTACTTTCTGATTAAACCCCTATGGGGATCGctatttaattaatgcattgAAAACCTTTACATGCAGTTTTATAACATAGGCATCAATCATTTCACAATGATCATGCattgttcagtttatttttagtcAAACAAGTGCATCATTTCtggttttaataaagttttatttaactgTACAACATTT

Function

symbol description
parpbp Predicted to enable DNA binding activity. Predicted to be involved in negative regulation of double-strand break repair via homologous recombination. Predicted to act upstream of or within DNA repair. Predicted to be located in cytoplasm and nucleus. Predicted to be active in chromatin. Orthologous to human PARPBP (PARP1 binding protein).

NR:

description
PCNA-interacting partner-like

GO:

id name namespace
GO:2000042 negative regulation of double-strand break repair via homologous recombination biological_process
GO:0000785 chromatin cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922759.2 True 2249 mRNA 0.51 11 5464313 5486990
XM_034313034.1 False 2245 mRNA 0.51 11 5464313 5487003
XM_034313035.1 False 2224 mRNA 0.51 11 5464313 5487007

Neighbor

gene id symbol gene type direction distance location
casc1 casc1 coding downstream 45256 5405474 ~ 5419057 (-)
bcat1 bcat1,LOC107725514,LOC107659834,LOC107587341 coding downstream 102334 5339773 ~ 5361979 (-)
sox5 sox5,LOC107725540,LOC107590035,LOC107587062 coding downstream 148406 5080812 ~ 5315907 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding downstream 460522 4988481 ~ 5003791 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding downstream 499220 4954291 ~ 4965093 (-)
th2 LOC108279869,LOC108437952,LOC107695848 coding upstream 27075 5514082 ~ 5528820 (-)
pah pah coding upstream 42149 5529156 ~ 5550953 (-)
LOC113532275 LOC108279443 coding upstream 78670 5565677 ~ 5625699 (-)
si:dkeyp-38g8.5 LOC108280028 coding upstream 297903 5784910 ~ 5790989 (-)
ucn3l ucn3 coding upstream 523283 6010290 ~ 6011543 (-)
G277443 NA non-coding downstream 15626 5447151 ~ 5448687 (-)
G277066 NA non-coding downstream 105085 5358451 ~ 5359228 (-)
G277065 NA non-coding downstream 106109 5355900 ~ 5358204 (-)
LOC117599571 NA non-coding downstream 137599 5315907 ~ 5326714 (-)
G276985 NA non-coding downstream 338835 5124473 ~ 5125478 (-)
G277447 NA non-coding upstream 72927 5559934 ~ 5560322 (-)
G277494 dcn non-coding upstream 171477 5658484 ~ 5727420 (-)
G277506 NA non-coding upstream 174804 5661811 ~ 5663019 (-)
G277508 NA non-coding upstream 182561 5669568 ~ 5670534 (-)
G277519 NA non-coding upstream 243838 5730845 ~ 5731069 (-)
tmpoa LOC108279628 other downstream 479998 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 725314 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 877217 4358625 ~ 4587096 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 494131 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 495285 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 1934981 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 2479812 7966819 ~ 7970571 (-)
G278634 NA other upstream 2566081 8053088 ~ 8068077 (-)

Expression


Co-expression Network