gpr85 (gpr85,LOC106576049,LOC107584006,LOC106609248)


Basic Information

Item Value
gene id gpr85
gene name gpr85,LOC106576049,LOC107584006,LOC106609248
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18739775 ~ 18744162 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922762.2
ctgctgctgctgctgcaaccGGAGACCAGACGCGGCTCCGGATCACGAAGAGCCTCAGTGCGCATGCGCCGTCTGCACCgtttactgtatattcacaGTGGGGGGAATAGGGGCAGACGACAAAACcaagccctgtttttttttaatacagcgAAGTGGAATCTAACATGTAAATAACATCCAGGAGGCAAGGCGGAATAGCAACAGgtgtgaTGAGACAAAGGAACAAAGGATGCCTTagaagagaggcagagagcAAGGCTGGAATCTGCTTCAAAGCACACCAAATGGATCTATCTCTTCTCCTTGCATCCAGATCATGATACTTGGCTTAAAGCTTTAATCATCTTTATGATCCCTCCTCCATCTATGGCGAACTATAGCCATGCAGGGGACCACAACATCTTGCAGAATGTCTCTCCCCTCGCCACATTCCTCAAACTAACCTCCCTGGGCTTCATCATCGGCGTCGGTGTTGTGGGAAACCTCCTGATCTCTATCCTGCTAGTCAAAGACAAGAGCCTGCACCGTGCGCCCTACTACTTCTTGTTGGACCTGTGCGCCTCAGACATCCTGCGCTCAGCCATCTGCTTCCCCTTTGTATTCACCTCGGTGAAGAACGGCTCGGCGTGGACGTACGGCACCCTCACGTGCAAAGTGATCGCCTTCCTGGGTGTGCTCTCCTGCTTCCACACAGCCTTCATGCTGTTCTGTGTCAGTGTGACACGCTACCTAGCTATCGCACATCACCGCTTCTATACCAAGCGGCTGACCCTGTGGACGTGCTTGGCTGTGGTGTGCATGGTGTGGACGCTGTCAGTGGCCATGGCCTTTCCGCCTGTGCTGGACGTGGGCACGTACTCGTTCATCCGCGAGGAGGACCAGTGCACGTTTCAGCACCGCTCATTCCGCGCCAATGACTCGCTGGGCTTCATGCTGCTGCTCGCCCTGATCCTCCTGGCCACCCAGCTTGTCTACCTCAAGCTCATATTCTTCGTTCACGACCGGCGCAAGATGAAACCGGTCCAGTTCGTGCCTGCTGTCAGCCAAAACTGGACCTTCCACGGACCAGGGGCCAGCGGGCAAGCAGCGGCTAACTGGCTGGCTGGTTTCGGCCGAGGCCCGACGCCTCCAACCTTGCTGGGCATCCGGCAGAACGGCAATGCGGCAGGCAGACGGCGCCTCCTGGTGTTGGATGAGTTTAAGACTGAGAAGAGGATAAGCAGAATGTTCTACGTCATGACTTTCTTCTTCCTTAGTCTGTGGGGGCCCTACCTAGTGGCGTGCTACTGGAGAGTGTTCGCCCGTGGCCCTGCCGTGCCAGGAGGCTATCTCACAGCAGCTGTATGGATGAGCTTCGCTCAGGCTGCCGTCAATCCCTTCATCTGCATCTTCTCCAACCGTGAGCTCAGACGTTGCTTCAGCACCACGCTCCTCTACTGCAGAAAGTCCAGGTTACCCAGGGAACCCTACTGTGTTATATGAAGGCTACATTTTTTTGGATCTTGGGTAAATTTTTTGGCTCCCCCTGGGTGGTCAGGGGTACATCCTTGTTGTATAGTTCtccttttcttcatcttcttcagtATAACCCCTGTACACAGCCCTGCCCTCACCCTGTAGGCCTGGTGTcaaactgtcaatcaaacacACCTCTCGATGTGAATCAGCGTCGGATGCAAAGCTTGAAGGGAATAAAATAATCAGGGAGTGGAGGAACCCCTCCTGTGTTTATGTTCTAGTAAACAACTGCTGCGGAAGGCCGTTTTAAAGCagataagcaaaaaaaaaaagaataaaaaaagaaagggaaataaaaaagaaagaaagaaaaaaaggaaagatggaATCAAAATGCGATTTTAATAATGGACTCATGCCTTCGCTTTGGATAAGTTGAAGACTAACGTTGTACATGACAGAATCACTGGaatggtttttttgtttaaaagttgcactaagctaaaaaaaaaaaaaaaaaaaagataaagttgCTTTTTTCCTGATTTGCATTGCAAGGATgtctcattttttccccaaactgacATACGAATGCTTTCTTTTGCAACAGACTACTCATTTACTGTAAGTAAACAAAACATGTGAGGTGACAAACTCTATTGGAATACACCTTCACAGGAGGATTAAATTGGTTTAAATGTAAGTGAtatcttttttcagtttttgggGGATGGGTGGGGAGGATTTTGGGACAAAAGGGTTACTGATGTGTGGTTTTCCAATTGCAACTTTAAATTATTTCCTGTAGTTTTATGATCCATGCAGTATGTCCTCGTCTGGCAGTATTCTTTTTCTTATCTCGGTTTCTAACGGTCTTAAAACAATTTTTGGTTTTTAAAAGTTGCTTTTGAGAACCTTGTGCTAAAATGAACATGGAGAACCAGTTCAATGTTTCATATCCATGTTACCCAGCCACTGACATTGTTACAGTATTGCTGATACCACTCCAGATGTTCTTGCCTTAATTGTTCTGATATTTGTTATTTTGGGTCCGATTTTCAAATGTGCTCCTCTGAAATGCCTCCAGGCTTCCAAGGAGCATTTTCACATTGAACTAAAGTGcatgttcattttaaaagcatATCCACTTTCATAAGCGTCGCCACTGGAAATGCACCAGACGCCCCATTTCTTCTCCTGAAGCGGTTTTGCTGTACACCTACACTCCACTGAGTGCACAGAGTGCAAGAAGCAGAGAAGCgcttgcgtgtgtgtatgtgtgtaagctGGACAGCTGTCACATCAAGACCAGAGCCTTAGTATAAAATCTTGCACAATTTGTAAAAAATGTActggaaaacaacaaaaaaacattgtatttaAGGCACAGCGTCTTGTTTATACCCAACATTTGCTCTTTACTGATTGTTTTGATTAACTTTTTTCTCTTGTggccattttaatatttattatgtatttttttgtatattatagaTAAATAGTGTGTAAGTTTGTGAGTCTTTCATTTTAGAGTCCCGGATGTGAGTACTGTTTAAGTTAGGATTGCATTTGCTGAAAGTTAACTGTGTAATCTGTTGcttacatttttgaaaataaaatttt

Function

symbol description
gpr85 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in central nervous system and retina. Orthologous to human GPR85 (G protein-coupled receptor 85).

NR:

description
probable G-protein coupled receptor 85

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04302 SREB2, GPR85; super conserved receptor expressed in brain 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922762.2 True 3084 mRNA 0.46 2 18739775 18744162

Neighbor

gene id symbol gene type direction distance location
tmem168a LOC108280006,LOC108425390,LOC103042505 coding downstream 64208 18665209 ~ 18675567 (-)
dock4b dock4b,LOC108279862,LOC108425388,LOC107656358,LOC106609220 coding downstream 146370 18484440 ~ 18593405 (-)
tnni4a zgc:101560,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC108425328,LOC107658770,LOC107584059 coding downstream 506036 18225500 ~ 18233739 (-)
tnnt2e LOC108425385,LOC108279691,LOC107658902,LOC107725993 coding downstream 583215 18145872 ~ 18156560 (-)
arl1 arl1 coding downstream 598001 18137795 ~ 18141774 (-)
ppp1r3aa NA coding upstream 37585 18781747 ~ 18787897 (-)
tfec tfec coding upstream 351230 19095392 ~ 19107426 (-)
lta4h lta4h,LOC107656327,LOC106576033 coding upstream 396283 19140445 ~ 19161281 (-)
cdk17 cdk17,LOC107656329,LOC107658862 coding upstream 446334 19190496 ~ 19247363 (-)
LOC117599463 NA coding upstream 508661 19252823 ~ 19254197 (-)
G284590 NA non-coding downstream 392939 18346453 ~ 18346836 (-)
G284559 NA non-coding downstream 554783 18180379 ~ 18184992 (-)
G284520 NA non-coding downstream 650833 18088654 ~ 18088942 (-)
G284352 NA non-coding downstream 838508 17901025 ~ 17901267 (-)
G284349 NA non-coding downstream 841545 17895335 ~ 17898230 (-)
G284862 NA non-coding upstream 75780 18819942 ~ 18823200 (-)
G284866 NA non-coding upstream 86763 18830925 ~ 18831139 (-)
G284882 NA non-coding upstream 117683 18861845 ~ 18862152 (-)
G284885 mdfic,LOC107095313,LOC106906624,LOC106523521 non-coding upstream 123895 18868057 ~ 18938095 (-)
LOC117599567 NA non-coding upstream 174234 18918396 ~ 18922897 (-)
trnae-cuc_38 NA other downstream 527382 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 528071 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 647231 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 649153 18090551 ~ 18090622 (-)
trnaa-ugc_11 NA other downstream 655921 18083783 ~ 18083854 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 934121 19678283 ~ 19735232 (-)
G285607 NA other upstream 1568905 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 2716664 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 3742074 22486236 ~ 22489467 (-)

Expression


Co-expression Network