LOC113531838


Basic Information

Item Value
gene id LOC113531838
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19283150 ~ 19284499 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922764.2
CAAATCATTAGGCTTTATTAAAGAAAGGGTTGCTGCTGAAAGTGGACCACTTCTGTTACAGTGTTGCATTATAGAAAACTCTGTGCAATGAAAACAATGACATCTGCTGCACTTTCATTCATACTTTTTCTCTGCTCTTTGAGCTACAGTTTGGCATCCAAGCAGCAGGATGTCTACGAGGATCTCTGGAATTGGAACGTGGACATCGCAAAAAAGACTCTCCATGTCGACTTCCTGCAGCAAATGCAAACCAACAGCCTGCAAGCTGAGCGCTACATCAACTTCACCTTGCAGGACATCAACTATGTGCTAGAGGTTACCAATATGCTGAAGATAATGAGCAAGAAGGTCAGAAAACCGGAAGACATCAGAGACTTCATAACAGGAAGATACACAAGTTACAAGTCATTCTTGGACGTGTTACTTCAGCAATATTTCTTTAAGGATACCCCTCCTATCAAACCAACTCCAGCCATGAAGAAATATCTGGAAACTTACCATGCAGTGATGAAGAAAGATCCTATCTACTTTGCTGTGGCTCTCCTGCCCTGCTCCAGGCTCTGGGTGTGGCTGGCTAACAATCTGAACATACCTGAAACCAATGCCTACTACACATGGAAAGTAGACAATATGGGTGGCCACCCTGAAAAGCATTACAAAGCTTTACTGAACAAATATctagacacaaaaaaaaagataaatactgCCAATGCGCTGTTCCGCAAGCAAATGCAGAATGAACATGACTTCTTTGCCACTTCTTGAGTTGATCATATTGTAAATTTGGCAGGCTTATCCTTTTTTCTACTCAACAGGTTTGTCCTTTACttgaattatataaatatgtttaattaacaaACAGTTCAACTCTCACAAAATTAGCTGCCACTTTTTTTATTGCCTttgtcattaatgttaatgatttaAGTGAGCAAAGTTCTTGTTTTAAGGCTTAagacatgttttcattttaaaatgtaacatttgtgtaattaaaaaagtatatattaaaa

Function

GO: NA

KEGG:

id description
K03707 tenA; thiaminase (transcriptional activator TenA)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922764.2 True 1013 mRNA 0.38 3 19283150 19284499

Neighbor

gene id symbol gene type direction distance location
LOC117599574 NA coding downstream 10456 19271595 ~ 19272694 (-)
LOC117599464 NA coding downstream 21106 19260713 ~ 19262044 (-)
LOC117599463 NA coding downstream 28953 19252823 ~ 19254197 (-)
cdk17 cdk17,LOC107656329,LOC107658862 coding downstream 35787 19190496 ~ 19247363 (-)
lta4h lta4h,LOC107656327,LOC106576033 coding downstream 121869 19140445 ~ 19161281 (-)
mcm10 mcm10 coding upstream 30114 19314613 ~ 19335240 (-)
pparaa ppara coding upstream 51162 19335661 ~ 19355138 (-)
atxn10 atxn10 coding upstream 127331 19411830 ~ 19428263 (-)
def6c LOC108279918 coding upstream 148387 19432886 ~ 19444451 (-)
cbll1 cbll1,LOC108438797 coding upstream 231855 19516354 ~ 19519608 (-)
G284885 mdfic,LOC107095313,LOC106906624,LOC106523521 non-coding downstream 345055 18868057 ~ 18938095 (-)
LOC117599567 NA non-coding downstream 360253 18918396 ~ 18922897 (-)
G284882 NA non-coding downstream 420998 18861845 ~ 18862152 (-)
G284866 NA non-coding downstream 452011 18830925 ~ 18831139 (-)
G284862 NA non-coding downstream 459950 18819942 ~ 18823200 (-)
G285245 NA non-coding upstream 4092 19288591 ~ 19290806 (-)
LOC113532309 NA non-coding upstream 72061 19356560 ~ 19385863 (-)
G285287 NA non-coding upstream 120580 19405079 ~ 19405317 (-)
G285288 wnt7b,LOC107388424,LOC107549584,LOC108429451,LOC103028473 non-coding upstream 121404 19405903 ~ 19406128 (-)
G285289 wnt7b,wnt7ba,LOC107725526,LOC107664847 non-coding upstream 123771 19408270 ~ 19408805 (-)
LOC113532190 NA other downstream 535317 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 1070757 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 1071446 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 1190606 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 1192528 18090551 ~ 18090622 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 393784 19678283 ~ 19735232 (-)
G285607 NA other upstream 1028568 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 2176327 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 3201737 22486236 ~ 22489467 (-)

Expression


Co-expression Network