ldhba (ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687)


Basic Information

Item Value
gene id ldhba
gene name ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4925716 ~ 4938813 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922781.2
ctcctctctctcgcGGAAGCTGACTACAGCGAGCGCGCGCCCTTCACGCACACATCCTCCTCCGCCTGCCATCAGCTCCGATCAGCTCCGCAAACCGCCTCACGCACCGCAGAAGGACGCAGagacatttctctctctctctctctcagtctctcacaccTGATATCATGGCCTCAGTCCTGGAGAAACTCATCACCTCCGTGAGCAGCGGTCCTGCTGACCCACCCACCAGCAAGGTGACTGTGGTGGGAGTGGGGCAAGTGGGCATGGCCTGCGCTGTCAGCATCCTGCTGAAGgacTTGTGTGACGAGCTGGCGCTGGTCGATGTGCTGGAGGACAAGCTGAAAGGAGAGATGATGGACCTGCAGCATGGCAGCCTCTTCCTCAAGACCCATAAGATCATCGCTGATAAGGACTACTCTGTGACGGCGAACTCGCGCATCGTGGTGGTGACGGCTGGCGTTCGTCAGCAGGAGGGCGAAAGCCGCCTCAACCTGGTGCAGAGGAACGTCAACATCTTCAAGCACATCATCCCTCAGATCGTCAAACACAGTCCCAACTGCATCCTCGTCGTCGTCTCCAACCCGGTGGACATCATGACTTACGTGACTTGGAAGCTCAGCGGCCTTCCCAAGCACCGCGTCATCGGCAGCGGCACCAACCTGGACTCGGCCCGTTTCCGCTTCATCATGGCCGAGAAGCTGGGCATCCATGCAAGCAGCTTCAACGGCTACATCCTGGGAGAGCACGGAGACTCCAGCGTGCCTGTATGGAGCGGCGCTAACGTCGCCGGAGTGAACCTGCAGAAGCTCAACCCGGCCATCGGGACGGATCAGGACAGCGAGAACTGGAAGGAGGCTCACAAGCTGGTGGTGGACAGTGCCTACGAGGTGATTAAGCTGAAGGGTTACACTAACTGGGCCATCGGAATGAGCGTCGCTGATCTGACCGAGAGCCTGGTGAAGAACCTGAGCAGAGTTCATCCTGTCTCCACCATGGTcaagggcatGTACGGGATCGGTGAGGAGGTGTATCTCAGCCTGCCCTGCGTCCTGAACTCCAGCGGCGTGACCAGCGTGATCAACATGACCCTGACTGACGGTGAGGTGGGGCAGATCAGGAAGAGCGCCGACACTCTGTGGAACATCCAGAAAGATCTGAAGGACCTGTGAAGTCATCCTGTAgtggccacacacacattctcacacacacacacactccacccatATCATACACATGCTTCTAACCCCTCCACTTAACACACGCATCCTCCGTAGGTGTAAAACATGGATCTATTTTTGTGTcttggtcattttttttcttttttgcttttgtcaTTTGAAAGATCAAGCTCCAGaatcctttcttttcttttctcctgaGGTGTGAATAAAATGTTGTAAGATCAGTTCTTTCACAAATATAGTAGGAGCGAAGGGGTTTTGTGGTGTTTCTGTCGACAGGAGCCAGACTGAAATATAGAGATATATTtccctaaaacaaacaaatcaaacgTGTTTAAAATGAGACGcaataaatcattaattaaatcCCACTCATGAATGTT

Function

symbol description
ldhba Predicted to enable L-lactate dehydrogenase activity. Predicted to act upstream of or within carbohydrate metabolic process and carboxylic acid metabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including alar plate midbrain region; musculature system; nervous system; pronephric duct; and yolk syncytial layer. Orthologous to human LDHB (lactate dehydrogenase B).
ldhb Enables L-lactate dehydrogenase activity and identical protein binding activity. Predicted to be involved in carbohydrate metabolic process and carboxylic acid metabolic process. Located in cytosol; membrane raft; and mitochondrial inner membrane.

NR:

description
PREDICTED: L-lactate dehydrogenase B chain isoform X2

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0044262 cellular carbohydrate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004459 L-lactate dehydrogenase activity molecular_function

KEGG:

id description
K00016 LDH, ldh; L-lactate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922781.2 True 1567 mRNA 0.53 8 4925716 4938813

Neighbor

gene id symbol gene type direction distance location
gys2 gys2,LOC107659841,LOC107694689 coding downstream 7936 4897270 ~ 4917780 (-)
psmc2 psmc2,LOC103382982 coding downstream 132919 4784128 ~ 4792797 (-)
cd36 cd36 coding downstream 865202 4044706 ~ 4060514 (-)
kdm7aa kdm7a coding downstream 980415 3919302 ~ 3945301 (-)
kmt2e kmt2e coding downstream 1019063 3857515 ~ 3906653 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding upstream 15478 4954291 ~ 4965093 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding upstream 49668 4988481 ~ 5003791 (-)
sox5 sox5,LOC107725540,LOC107590035,LOC107587062 coding upstream 141999 5080812 ~ 5315907 (-)
bcat1 bcat1,LOC107725514,LOC107659834,LOC107587341 coding upstream 400960 5339773 ~ 5361979 (-)
casc1 casc1 coding upstream 466661 5405474 ~ 5419057 (-)
G276753 NA non-coding downstream 44708 4880418 ~ 4881008 (-)
G276761 NA non-coding downstream 48924 4817108 ~ 4876792 (-)
G276755 prdm4 non-coding downstream 81345 4801907 ~ 4844371 (-)
G276749 NA non-coding downstream 126559 4798659 ~ 4799157 (-)
LOC117599580 LOC108279645 non-coding downstream 338724 4586256 ~ 4586992 (-)
LOC113531850 NA non-coding upstream 4736 4943549 ~ 4945278 (-)
G276980 NA non-coding upstream 168067 5106880 ~ 5110968 (-)
G276985 NA non-coding upstream 185660 5124473 ~ 5125478 (-)
LOC117599571 NA non-coding upstream 377094 5315907 ~ 5326714 (-)
G277065 NA non-coding upstream 417087 5355900 ~ 5358204 (-)
G276650 LOC108279602 other downstream 186717 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 338620 4358625 ~ 4587096 (-)
LOC117599578 LOC108279645 other downstream 443151 4466061 ~ 4482565 (-)
LOC117599555 LOC108279645 other downstream 468595 4357539 ~ 4457121 (-)
tmpoa LOC108279628 other upstream 27419 4966232 ~ 4984315 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 1042325 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 1043479 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2483175 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 3028006 7966819 ~ 7970571 (-)

Expression


Co-expression Network