cand1 (cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592)


Basic Information

Item Value
gene id cand1
gene name cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19898260 ~ 19922472 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922802.2
CCTCCCTCCTGCACGCCGAGAACTCGGACCTCcattcaaacacacaacctGCAGAAAGGGATGAAAGTCTGCTGGAGAGCGTAGAGCCGCTGATCAGCGCCTGGAGACGGGGACAAGCAGGAGACCGAGCGCGGAGACCCGGGCTTCACTCTGCAGCcgcatagagagagagagagagagagagagagagagagagacttaacACTTACAAGTGGTTGCTAGCAAAgccgtgacacacacacacacacacacacacacacacacacacacacacagagagcactgCAAACATGGCGAGTGCTTCGTATCACATCTCTAATCTGCTGGAGAAGATGACTTCAAGCGACAAGGATTTCAGGTTCATGGCCACTAATGACTTGATGTCTGAGCTGCAGAAGGACTCTATCAAGCTGGATGATGACAGTGAGCGGAAAGTGGTCAAGATGATCCTCAAACTCCTGGAAGACAAAAACGGAGAAGTTCAGAACCTGGCAGTGAAATGTTTGGGGCCACTCGTGAGCAAAGTGAAGGAGTACCAGGTTGAGACGATTGTGGACACGTTGTGCACGAACATGCTGTCAGATAAAGAGCAGCTTCGAGACATTTCCAGCATTGGTCTGAAGACTGTGATCGGGGAGCTCCCACCAGCATCCAGCGGCTCTGCCCTTGCTGCCAGTGTTTGTAAAAAGATAACAGGCCGTCTCACAAGTGCCATTGCCAAGCAGGAGGATGTGTCAGTGCAGCTCGAAGCCCTGGACATCATGGCTGACATGCTCTGCAGacaagGAGGCCTGTTAGTGAACTTCCACCCTTCCATCCTGAGCTGCCTGCTGCCCCAGTTGACCAGCCCTCGGCTGGCTGTTAGGAAGAGGACCATTATAGCTCTGGGTCATCTGGTCATGAGCTGTGGGAACCTCGTCTTCGTTGACCTCATTGAGCACTTACTGTCTGAGCTCTCGCGCAACGACTCCATGTCCACCACTCGCACTTATATCCAGTGCATCGCTGCCATCAGCCGACAAGCTGGCCACAGAATTGGAGAGTACTTGGAGAAGATCATTCCATTAGTGGTGAAGTTCTGTAacattgatgatgatgaactGAGGGAATACTGCATACAAGCCTTTGAGTCCTTCGTCAGGAGGTGTCCAAAAGAGGTTTACCCCCATGTCCCAACAATCATCAACATCTGCCTCAAGTACTTAACCTATGACCCCAACTACAACTACGATGACGAGGACGAAGACGAGAATGCAATGGATGCCGACGGTGTTGATGAAGACTACCAAGGAAGCGATGATGAATACAGCGATGACGACGACATGAGCTGGAAGGTGCGGCGAGCGGCAGCTAAATGCCTGGATGCCGTGGTGAGCACCCGGCACGAGATGCTGCCCGAGTTCTACCGCACAGTCTCCCCGGCACTTATCGCCCGCTTTAAGGAACGTGAGGAGAACGTAAAGGCTGACGTGTTCCACGCCTACCTGTCCCTGCTAAAACAGACACGGCCAGCTCAGAGCTGGCTGTGCGACCCTGACGCTATGGAACAAGGCGAGACTCCACTCACAATGCTGCAGAGCCAgGTGCCCATGATCGTGAAAGCCCTGCATAAACAAATGAAGGAGAAGAGTGTGAAGACCAGGCAGTGCTGCTTCAACATGCTGACAGAGCTGGTAAATGTGCTGCCTGGGGCTCTGACTCAGCACATCCCAGTGCTCGTCCCAGGAATCATATTCTCTCTAAATGACAAATCAAGCTCCTCCAATCTAAAGATTGATGCCCTGTCCTGTTTATATGTGATCCTGTGCAATCACCAGCCTCAAGTCTTCCACCCCCATGTTCAGGCCTTGGTGCCCCCTGTAGTGGCCTGTGTGGGCGATCCCTTCTACAAGATCACCTCAGAAGCCCTGCTGGTCACCCAACAGCTGGTGCGGGTGATCCGGCCCCTCGACCAATCGGATGCCTTTGATGCCTCGCCCTACATTAGCGATCTCTTTGCTTGCACCATCAAGCGTCTCAAGGCAGCCGACATCGATCAGGAGGTCAAAGAGCGTGCCATCTCTTGCATGGGCCAGATCATCTGTAACCTTGGTGACAGTCTGGGTGCAGACCTCCCAGGCACGCTCTGCATCTTTCTGGAGCGGCTGAGGAACGAGATCACCAGACTGACTACGGTGAAAGCTCTGACACTGATTGCTGGCTCACCACTCAAGATCGACTTGCGTCCCATCCTAGCCGATGCAGTTCCGATCCTGGCCTCGTTTCTGCGCAAGAACCAACGGGCGCTGAAGTTAAGCACTTTGGCAGCACTGGACATACTGGTTAAGAACTACAGTGACAGCGTGACGCCAGCCATGATTGATGCTGTGCTAGATGAGCTCCCGCCTCTCATTAGTGAGAGTGACATGCATGTCTCGCAGATGGCCATCAGCTTCCTGACCACACTGGCCCGTGTGCACCCAGATTCTCTTGCCAAGATCAGTGGCTCCATCCTTTCAGAGCTCATTGCGCTGGTGCGCTCACCACTGCTGCAGGGCGGCGCCCTTGGCGCTATGCTAGAGTTTTTCCAGGCTCTAGTGGCCACTGGCACGGCCAGCCTGGGCTACATGGACCTGCTGCGCATGCTTACCAGCCCCGTGTATGCACAGAGTGCCTCACTCACCCACAAGCAGTCGTACTACTCCATCGCCAAGTGTGTGGCAGCCCTCACCCGTGCCTGCCCTAAAGAGGGCCCTGCTGTAGTCGGTCAGTTCATCCAGGATGTCAAGAACTCGCGCTCCACTGACTCCATCCGCCTGCTGGCCCTGCTCTCCCTGGGTGAGGTGGGCCACCATGTGGACCTGAGTGGCCAACCTGAACTCAAAACCGTCATCCTGGAGGCCTTCTCCTCTGCCAGCGAAGAGGTGAAGTCAGCTGCCTCTTACGCACTGGGCAGCATCAGTGTGGGCAACCTGCCTGAGTACTTGCCCTTCGTGCTGCAAGAGATCTCAGGCCAACCCAAGCGCCAGTACCTGCTGCTGCACTCGCTCAAGGAGATCATCAGCTCAGCATCAGTAGGCGGCCTCAAGCCGTACGTGGAGAGCGTGTGGGCTCTGTTGCTCAAACACTGCGAGTGTACAGAGGAGGGCACCCGCAACGTGGTGGCAGAATGCCTGGGCAAGCTCACTCTTATAGACCCTGAGACGCTACTGCCTAGGCTAAAGGGCTATCTGTTATCAGgaTCTTCTTATGCCAGAAGCTCGGTAGTTACTGCTGTAAAGTTTACAATTTCAGACCATCCACAGACAATTGATCCCCTACTGAAAAACTGCATAGGTGATTTCCTGAAAACATTGGAAGACCCAGACCTTAACGTGCGACGAGTGGCCCTGGTGACATTCAACTCTGCAGCCCACAATAAGCCCTCGCTTATCCGAGACCTGTTGGACACTGTACTTCCTCACTTATACAATGAGACCAAAGTGCGCAAAGAGCTGATTAGAGAGGTTGAAATGGGTCCGTTCAAGCACACAGTGGATGATGGGCTGGACATCCGGAAGGCTGCTTTTGAGTGTATGTACACTCTTCTAGACAGCTGCCTCGATAGACTTGACATCTTTGAATTTCTTAACCATGTCGAAGATGGACTCAAAGACCATTATGATATCAAGATGCTGACATTCCTGATGCTGGCCCGACTCTCCACTCTGTGTCCTAGTGCTGTGCTGCAGAGGTTGGACAGACTGGTAGAGCCTCTCAGAGCCACATGTACTACAAAGGTAAAGGCAAACTCTGTAAAGCAGGAGTTTGAAAAGCAGGATGAGCTGAAACGATCAGCCATGCGGGCGGTGGCGGCTCTGCTCACCATCCCCGAGGCGGAGAAAAGCCCCCTGATGAGCGAGTTTCAGTCACAGATCAGCTCCAATCCTGAGCTCGCTGCCATCTTCGACAGTATCCAGAGGGACTCCTCATCGGCCAACATGGAGTCCATGGACACCAGTTAAACCACATCTGGCCCGCTCACCACCGCCGCTCGCAAACAAAAAGCTGCAACAATCCTGGGGGACCCTTTTATCGTTCCATGCATTGCACTGAATCAACAAtaataggaggaaaaaaaaaatcgaaaagcttaaaaaagaagaaatggcttaaaataagaaaaagctcaaaattattaaaaaggaaGACGTTCACTGTCTTAAGCTTCAAAGCTCATCACCACATTCatctttttgtcccttttttttccccccaaaatagAGAAATTGTTCatcattctttgttttttctctctttgatTGTTGCTGAGTTGAGGGACTTGGACAGACATCATAGAGACAGACTGTGTGAGCTTACTTATGTTATCGATGGGGGAGATTTGTTCTTTTCATTCTTCACTGTAGACTCTTATCGGATTGACAAGGGTACATGTTAGCGTTGATCTAAGGACCATCTTTCTTGTTTGTTATCATTTTTCTTACCAGACCAGTTTTAATGGGTGTTTTTGTACAACATGAATGTCATCTCTTGTCTCATCACTTTGTCTAAATTTGCTGGTTGACAGGTCGGTGGGCTCCCAGAGAGATGTACGTGTTAGAAATATTCTATTAAAGAAATGGTGGAGTGGTTGGAGGATGGTGTTTGGCGAGTGAATACTACTTTATTCACCCCTTTTTCTTGACCCTAAACATCAGTTTAACATTCCCACCATCTGCAGATTTACATGGTGTAAACAGCATGTATTAGACATCCAGTGACCTAAaatacactctgtgtgtgtgtgtgtgtgtaagattttCTGACAGTTTTGTTTGGCGGAAACATACAGAAGTGAAATCTGGATCAACATTGCTATGAGAAATAACTGCTCTGTATGGACATGAGTTTCACACACgtgaataaaaatattagtgGAGA

Function

symbol description
cand1 Predicted to be involved in SCF complex assembly and protein ubiquitination. Predicted to be active in nucleus. Orthologous to human CAND1 (cullin associated and neddylation dissociated 1).

NR:

description
PREDICTED: cullin-associated NEDD8-dissociated protein 1

GO: NA

KEGG:

id description
K17263 CAND1, TIP120A; cullin-associated NEDD8-dissociated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922802.2 True 4899 mRNA 0.51 15 19898260 19922472

Neighbor

gene id symbol gene type direction distance location
si:dkey-39a18.1 LOC108279454 coding downstream 1302 19891912 ~ 19896958 (-)
dyrk2 dyrk2,LOC107757277,LOC107694272 coding downstream 30087 19859501 ~ 19868173 (-)
mcat mcat,LOC107553884,LOC106609558,LOC107732994 coding downstream 221877 19671525 ~ 19676383 (-)
cfap54 cfap54 coding downstream 233311 19633422 ~ 19664949 (-)
cbll1 cbll1,LOC108438797 coding downstream 378652 19516354 ~ 19519608 (-)
wif1 wif1,LOC107655595 coding upstream 320436 20242908 ~ 20256547 (-)
trnaa-ugc_16 NA coding upstream 499929 20422401 ~ 20422472 (-)
lmo3 lmo3,LOC107550907,LOC107757261 coding upstream 537157 20459629 ~ 20500907 (-)
tmem121b cecr6 coding upstream 787497 20709969 ~ 20712919 (-)
mkrn1 mkrn1,LOC107725576 coding upstream 792568 20715040 ~ 20729637 (-)
G285362 NA non-coding downstream 179125 19710897 ~ 19719135 (-)
G285361 NA non-coding downstream 220665 19676840 ~ 19677595 (-)
LOC113532316 NA non-coding downstream 310016 19580854 ~ 19588244 (-)
G285331 NA non-coding downstream 337641 19560412 ~ 19560619 (-)
LOC117599445 NA non-coding downstream 467701 19429170 ~ 19430559 (-)
G285425 NA non-coding upstream 31141 19953613 ~ 19960579 (-)
G285428 NA non-coding upstream 40487 19962959 ~ 19967411 (-)
G285426 NA non-coding upstream 102271 20024743 ~ 20026895 (-)
G285593 NA non-coding upstream 356054 20278526 ~ 20291863 (-)
LOC117599590 NA non-coding upstream 384871 20307343 ~ 20312535 (-)
rap1b rap1b,LOC106576640,LOC107695907 other downstream 163028 19678283 ~ 19735232 (-)
LOC113532190 NA other downstream 1150427 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 1685867 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 1686556 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 1805716 18092217 ~ 18092544 (-)
G285607 NA other upstream 390595 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 1538354 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 2563764 22486236 ~ 22489467 (-)

Expression


Co-expression Network