slc6a1l (LOC108279609,LOC108427058,LOC107584717,LOC107689715,LOC107748475,LOC107597007,LOC101061665)


Basic Information

Item Value
gene id slc6a1l
gene name LOC108279609,LOC108427058,LOC107584717,LOC107689715,LOC107748475,LOC107597007,LOC101061665
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 15032648 ~ 15047471 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922976.2
GAGACTTTCTTTTGACTCTGTAATGGGCAGCTGGGAACTAGTTCTCACTTGGGAGTTCTCCACTGgatttttgctcttttattcAGCTGAGATACCTTCATATCTCACAGCTGAATGATCTGTCTGCTGTCCACTACTGAAGATCTGCACAGCTTGTGGAACAATCGCATCACGTATCGGACATTAATACGGCCCAGTCTTCACTACAATAAGTACTGTTTAGTACACTAGCTCAGTCCTTAGGTGGactgtggaacatctgtgaaccTGCCATGGGAAAAACAGGGGATAGCACTGTGCAGCTCAACTCACCATCGGAGCTCAAGCAGGCTATTCCATTTGAGGAAGTGAACCACAGTCTGACTTCTGCTCTGAATGAGAGCAAGCAGAGCCTTCCTGATCGAGGCACCTGGAAGGGCAAGTTTGACTTCCTGCTGTCCTGCATAGGATATGCCATTGGCCTGGGAAACGTATGGAGATTCCCATATCTCTGTGGGAAAAATGGAGGCGGAGCATTtcttattccttacttcacTACATTGGTGTTTGCTGGGATTCCTCTATTTCTGCTGGAGACTGCACTAGGACAGTACACATCAGTAGGAGGACTAGGGGTCTGGAAACTCATACCCATGATGAAAGGTGTAGGTTTGGCTGCTGCAGTGTTGTCCTTCTGGCTCAACATCTACTACATCGTCATTATTGCCTGGGCCCTCTACTACCTGTTCAACTCCTTCAGATCAGAGTTGCCTTGGCAGAGTTGTGATAACCCCTGGAACACCGATCACTGTTTCTCCAACTACAGCCTGACTGATACCACCAACCTGACCAGCGCTGTAACTGAATTTTGGGAGAGGAACATGCACCAGCTGAGCAGTGGTCTGGAGGAGCCGGGTGAGTTGCGCTGGCCGCTGGCTGGGACTCTTGCTCTGGCCTGGGTACTCGTCTACTTCTCTATTTGGAAAGGGGTTGAATGGACTGGAAAGGTGGTCTATTTCTCTGCCACTTATCCGTACTTCATGCTCTTCATCCTGTTTTTCCGAGGCATCACTCTCCCAGGGGCTAAAGATGGCATTCTCTTCTACATCACCCCTGACTTTAACAAGCTCCAGAAATCTGAGGTGTGGTTGGATGCTGCCACTCAGATCTTCTTCTCTTATGGTCTCGGTTTGGGTTCTCTGATTGCTCTGGGCAGCTACAATACCTTCAATAACAATGTCTACAGAGATGCCATCATTGTGTGCTGCATAAACTCCTTCACCAGCATATTTGCTGGCTTTGTCATCTTCTCCATTGTAGGATTCATGGCCTACATCACAAAAAAACCAATCCAGGAATTAGCTGCCTCAGGTCCAGGTTTGGCGTTTCTGGCATATCCTCAGGCTGTGACTCAGCTTCCCATGTCCTCTCTGTGGGCCATTCTCTTCTTCTCCATGCTTTTGATGCTTGGACTAGACAGTCAGTTTTGTACTGTGGAAGGTTTCATCACAGCTTTGGTAGATGAATATCCCACCATCCtaaggaagaggaagaaattATTCATCCTCGTGGTCTGCATTATCTCATTCGTCATTGGCTTGTCCAACATCACACAGGGTGGCCTGTACGTGTTCAAGCTATTTGACTACTACTCAGCCAGTGGGATGTGCCTCCTCTTCCTCGTCTTCTTTGAGACAGTCGCTATAGCCTGGTTTTATGGAGCAGAGAGGTTCTATAAAAACATTGAGGAGATGATCGGCTATCGTCCATGTGGCTGGTGGAAACTCTGCTGGCTCTATTTCACCCCATCAATCTGTTTGggggttTTCACCTTCAGTGCAATAGAGATGACCCCGCTGACCATGGGCAAGTATGTGTTCCCAGGCTGGGGACAGGGCATCGGCTGGCTCATGGCTCTTTCCTCTATGCTCCTCATTCCTGGATACATCATTTACATGTTCTTCAACATCAAGGGAAGCATTCATCAGCGCTGGCACAAAATGACAAAGCCCAGTGAAGAAGCCAAGCCAACAGAGAACCACCATTTAACACAGCAACATTACCAAGCGGGAATAATGGGAGAAGCGTCTGTCTAATATCACCTGGAAACTGAGGGCACTACAGGAAGGCACTCTGGCCACAGCACTGATATTTATTCTTTCTGTTTAGCTCAATCAGTAAATGAATATAAGAGCATAATATAAAGAATGTATAAAAGACTCACCCAAA

Function

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter 1-like

GO:

id name namespace
GO:0015812 gamma-aminobutyric acid transport biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0003333 amino acid transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function
GO:0005332 gamma-aminobutyric acid molecular_function

KEGG:

id description
K05034 SLC6A1, GAT1; solute carrier family 6 (neurotransmitter transporter, GABA) member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922976.2 True 2208 mRNA 0.47 15 15032648 15047471

Neighbor

gene id symbol gene type direction distance location
LOC113531970 LOC108279954 coding downstream 147076 14873850 ~ 14885572 (-)
kin kin coding downstream 1173975 13851543 ~ 13858673 (-)
LOC113531720 itih5 coding downstream 1203140 13808409 ~ 13829508 (-)
LOC113532385 kcna1a,kcna1l,LOC108279524,LOC108425346,LOC105912431 coding downstream 1245214 13782762 ~ 13787434 (-)
LOC117599536 itih5 coding downstream 1268858 13751523 ~ 13763790 (-)
LOC113531968 LOC108279915,LOC107597036 coding upstream 12041 15059512 ~ 15078787 (-)
pyroxd1 pyroxd1,LOC108279593 coding upstream 53885 15101356 ~ 15111265 (-)
LOC113531721 iapp coding upstream 68756 15116227 ~ 15118561 (-)
LOC113532053 LOC108279522 coding upstream 75263 15122734 ~ 15138477 (-)
LOC113532243 LOC108279995 coding upstream 166465 15213936 ~ 15236310 (-)
G282673 NA non-coding downstream 293211 14739216 ~ 14739437 (-)
G282649 NA non-coding downstream 301644 14715045 ~ 14731004 (-)
G282410 NA non-coding downstream 642091 14389823 ~ 14390557 (-)
G282409 NA non-coding downstream 659135 14372731 ~ 14373513 (-)
G282404 NA non-coding downstream 699516 14332932 ~ 14333132 (-)
LOC113532334 NA non-coding upstream 161877 15209348 ~ 15213255 (-)
G282950 NA non-coding upstream 223523 15270994 ~ 15271200 (-)
G282999 NA non-coding upstream 303235 15350706 ~ 15353441 (-)
G283022 NA non-coding upstream 340477 15387948 ~ 15390101 (-)
G283081 NA non-coding upstream 469753 15517224 ~ 15521690 (-)
dusp16 dusp16 other downstream 3279735 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 3372321 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 3444624 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 3773236 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 3938472 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 92454 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 1353450 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 1791064 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 1911041 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 2931292 17978763 ~ 17988280 (-)

Expression


Co-expression Network