LOC113531978 (LOC108279914)


Basic Information

Item Value
gene id LOC113531978
gene name LOC108279914
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 17611890 ~ 17616249 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922984.2
GTGGagtgaaagagaggaagagacaccAGGAGCAGGGAGCACGAGTCTGTCTGGAGGAACAGGTAGAAGTTGGAAAGTTTTCAGCTTAGTTTTGATAAACTCAGCAAGCACATATACCTGCTCAGATCTCCTCAGTATTTTAGGAGATGGCGAGGAAACGTGTCTCTACAGGTGGACCTCTTTGTGTTTGAGAGACAAGACAAAGGAAAGCTTTGCTTTACAGACAGAGAGCATCACTGAGATTGCCTTCACTACCATTCCAGCATCAACACTGAAGATTAGACTGGATGTACGAGTCTGACCATGCAGTCAGCTGGACTGGAGCAAGAAGACTGCTTCGATTTCTTGTTCAAGATTATTCTAATCGGAGACACAGATGTTGGCAAAACGTCTGTGATTCAGAGGTTTAAGACTGGGAACTTCTCTGAGAGGCAGCAGAGCACTATCGGAGTGGACTTCATTGTTCGCACCCTCAACATCCAGGGCAGAAAAGTAAAGATGCAGGTTTGGGACACGGCAGGGCAGGAGCGTTTCCGCACCATCACACAAAGCTACTACCGCAGTGCACATGCAGCTATGATCACCTACGATATCACCCGCAAATCCACGTTCGACACTATACCACAGTGGGTCCAAGAGATGGAGCAGTATGGAGCTGCCAATGTCCTACTGGCCCTCATAGGTAACAAGTGTGACCTGGAGTCTGAGAGACAGGTTGAGTTTAATGAAGCATGCACACTGGCAAAGCAGAAAGGAATTGTAGTTGCACTGGAAACCTCAGCAAAGGAAGCCCAGAACGTGGATCAGGCCTTCATCGTGATGGCGCGTGAGCTACTGGCGTGCAATGGACTAGCTGTAAAGGAGGACGGATATCACATGGATTCTCCGCGCATATTACTGCGTTCCAACACCAAAACGATTGACAGCCCCACAAACACAGTGGAGAAAAAGGCATGCGAGTGCTAACACTGGACTCAGAGTTTACACACCTATCATTCTGAatgaatttgtgctcattccaTACTAAATCCAGTTGATTTGTTACGAACATTGTGTCTTCTCAGTGTCAGACACCATCTTTTATACAGATGTAAGTCAAAATACTCCCATATTAATAAGATAAAGTAGATACAGTTGAGCAGGCTAATCTCTCAATAACAGCCccttcctatatatatatataccaaattaaatacatttatgtaataACACCATAAATATTACTAAGGAGCATGCATTGGCTATGATCCACTAGTGAGCCATCAAATGTCCACAGATTTTTATCCATCCATTATCCATAGGATTTATAATCAGCTGGATTCTAAATAAACCGTCCTCTTTTGAGACAAAAGTGCAAAACACTATTCCTCAAACTTGTTCCATGACCTTACCTTTAtaataaatgtgctttaaaGTTTAA

Function

GO: NA

KEGG:

id description
K17047 RAB19; Ras-related protein Rab-19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922984.2 True 1420 mRNA 0.44 3 17611890 17616249

Neighbor

gene id symbol gene type direction distance location
ckap4 ckap4 coding downstream 17573 17591120 ~ 17594317 (-)
LOC113531974 LOC108279712 coding downstream 105393 17498388 ~ 17506497 (-)
LOC117599443 LOC108279803 coding downstream 117103 17486811 ~ 17494787 (-)
LOC117599538 LOC108279803 coding downstream 126469 17484558 ~ 17485421 (-)
slc37a3 slc37a3,LOC107562143,LOC107758206,LOC107601005,LOC106609230 coding downstream 131056 17462955 ~ 17480834 (-)
gnsa gns,gnsa,LOC107658926,LOC107656403 coding upstream 179635 17795884 ~ 17809289 (-)
ano2b LOC108279462,LOC108425378 coding upstream 291379 17907628 ~ 17971244 (-)
strip2 strip2,LOC107656389 coding upstream 374380 17990629 ~ 18023472 (-)
slc5a8 LOC108279688 coding upstream 481378 18097627 ~ 18106446 (-)
arl1 arl1 coding upstream 521546 18137795 ~ 18141774 (-)
G284165 NA non-coding downstream 16991 17594653 ~ 17594899 (-)
G284145 pacsin2,LOC108279716,LOC103038884 non-coding downstream 46935 17558407 ~ 17564955 (-)
G284146 pacsin2,LOC108279716,LOC103038884,LOC107725788 non-coding downstream 58632 17548332 ~ 17553258 (-)
G284135 NA non-coding downstream 88247 17521426 ~ 17523643 (-)
G284134 NA non-coding downstream 96650 17513610 ~ 17515240 (-)
G284273 NA non-coding upstream 101656 17717905 ~ 17718238 (-)
G284294 NA non-coding upstream 145782 17762031 ~ 17764929 (-)
G284295 NA non-coding upstream 174285 17790534 ~ 17790763 (-)
G284323 NA non-coding upstream 234208 17850457 ~ 17850894 (-)
G284349 NA non-coding upstream 279086 17895335 ~ 17898230 (-)
phf21b phf21b other downstream 584025 16958512 ~ 17027865 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other downstream 758495 16838535 ~ 16853395 (-)
alg12 alg12 other downstream 1205027 16400921 ~ 16406863 (-)
LOC113531972 muc19,LOC108280038 other downstream 2427815 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 5858977 11721063 ~ 11752913 (-)
LOC113532261 smkr1 other upstream 362514 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 411485 18027734 ~ 18067585 (-)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 other upstream 452349 18068598 ~ 18082361 (-)
trnaa-ugc_10 NA other upstream 466989 18083238 ~ 18083309 (-)
trnaa-ugc_11 NA other upstream 467534 18083783 ~ 18083854 (-)

Expression


Co-expression Network