ppp1r3aa


Basic Information

Item Value
gene id ppp1r3aa
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18781747 ~ 18787897 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922985.2
GGGGCAGTCACGGTGTGTGGGGTATCAGTGCGCTTGAACTTTCCTGCCTCCCCTGTCTCTCAGTCATACACCGTGCACGAATATCGGTTGAAGAACCTGGACCTGCCATGGCTTCCTGCTACACTGAGCCGTCAACACTCAGTGCTTGGATACAagatgaagatgaggaagagaaagagccAAAATCTCCACAAAGGAGCTCAAGTGATGAGTCTGAGGAGTCAGAACCTGAGCCATCACTGGCTTCTGTGGTGCGAAGGAAGGTTTCTTTTGCAGACGCTTTTGGCTTGGACTTGGTTTCTGTTAAGGAGTTTGATAACAGAGTTGAGAGTGCtgaaggaagagagggagaggagtaCCACCTGTCCTGCATCTTCAGCGTCCCAAACTCAGATGAGGAGCTGAAGCTCCGGCTTTGGCAGAACAAGCTGGAGCTGGAGAGCATTGAGCTCCTGCCTGGCTCCACCACCATCCGTGGCACTGTCCGTGTGCTTAACCTCTCTTATCACAAGGTTGTTTATGTACGCACTACTTTGGATGGATGGCAAAGCCACTTTGACCAGCTAGCTGAGTATGTTCCTGGATCCAGCGATGGAGAGACAGACCGCTTCTCCTTCCAACTCACCCTGATGCCTCCCTTTCCACCCAGTGGGGCCCGGCTGGAGTTCTGCCTCTGCTATGAATCCTCCACTGGAATCTTTTGGGCAAACAATGGAGGTATGAACTATGTGCTGTTTTGCCATAAGAGAGGAAGGAGAACActgaaagagaaggagggagggaaagaaaggGAGACTGAAGAGAACGatcaaaagggaaaaaagagctGCTTGAAAGCTATAAAAAAGGGGAGTTGTGCTGAGTCGAAGCCCACGGACAAGAACAGTGAACTCTCAGagcaAGAGTCACCCAGGTCTGTAGAGAATCAGAAAGGAAAAACTCAGCACATAGCTGAAAGTCGATCAAGAGATGCACTAGAGGAGAACTGCAAAACTTTGACTGAAAGACGGAACAGAAGACGAGCAGCTCAGTTGGCACACTTGCAAGACTATTTCTCTCATAGGGACACAGAAGTCCAGCTAGGTCAACCTTCTCATCAAGAAAAATCTAAGAGAGATTTAAATGTGGTACTACCCATGCCACAGCATAGTATTCCAGTGATGACAGACACTTCTAGTACACTTCAAGTATGCAGCAGAAAGGAGCAAAATGGGAATACATCATTGATTCTACCTGACCATCAGATTCCCTTACTTCCCCTGGACTGGGGTAGAAACATCTcatctccacctctctctcatCCAAACACTTCTGAGATCATTAGTGGAACAAAGCCAGATGCTCTTGAAAAAGAGCGAACAGAGGATGTGTCAACAGAGTTCTCAAATGATGCCTGGAAAGCTTTCCTCAGTGGTACAGATAGTATAGACAACCAGAACAATCCTTTGAACCAAAAGTGCTTGCTTTGCGTTGCAGGGTCCAATGATTCCCAGGCATCAAATACAGAATATGATGTGTCCAATATAGGGGACAAAGTATTATCAGTGTGGAGTACCCAGGAGTCTGCAGTGACCAGTGGGAATGGCTCACACCAGTGCTTTACAGCAATGGAAACTCTAGAGTCTGATCCTGCTGAACTGTCACAAGCTCTTGACCCCAGTCATATCAGTGAGGTGTTGAGTTATAAGGATCCTGAAAAGGCACAGATCATTTCTGAACCACATACTGTTCAGGAATCAGAATCAATCTGGGCCCAATGGATGCCTGGTGTCACTGAGGCCCCACATGACAGACACATACTTAGTGAAAGGCCTTTTAGTGAAGACAAGCCCATGCTATTAACCAACCCAGGGGAGACAGCCCATGCTGAGGATGCCACAGAGCCACTGTATTCCAAATCAGGAAATGGAGTCTTGCTTGAAGAATGTGCAAGCAGTACAGGGTTCTTAGACACAGAAATGAAGGTAAAAGGGGACACATACAGAGTAGTTGAAGATATTTTGACATTTAACGGGATCAGCAAGAAACCCTTTACAGACAGTAGGGAGTCTTTAGAACGACAGTATATAGATGAAAgcaaaaaaccaacaaaaaagaaagaaaatgagaaagtaTCCCAAATGAAAAGGATATCTTGGAGTGAGTATTCTGAAGATGCTTTAGTGGTACTAGAAAGCAGATTGCAAACAGATGAACAGGAACCATCCTGTCTAAAAGATGAGAACACAGAAATATGGATTTCATCGAGGAcaagtgtggtgtgtgatgaaggTGAACCACATAAACAGACTGAATGTCTCGATAGGGGAGAAGAGGGGGTTGTGTGTTATGAGTTAGTGAAAAAGGGATTCTCTGACTCCAGTGAGAGGCAAGGAGAAGAAATATCCTCTGTAGAAAATATAGCTAATAGAGAATgtgaaaatggtttaaaaactGAAGGTCAGGGTATATATGGAAGGCAGAATGAGGGTGATGACTACACAGACAATTACCTACACAAGGAACTACACAAGCTTCAAAGTTCCCCTGAAACCTGCCCACATGCACCCAATCTATGTATAACTAGCCACACCAGTAGTCCACCTGGGCACTTCACCTGGACAGAATCTGTGAGTGAGGGTGaacttcttctttttcctgcCCCTCATAAGGGTTTTGAGAGTGAGGAGACTCTGAGGTATAGGGTAGCTCCGGACCTCCAGGATCCAGGTGTGGGGACTGAGTTTCCTAGCTCATTCTCCAGGACGGCTTCTCCCTCAGTGGGCACAATGTCAAGCTGGCTGCTGGTGTGCTGGGCCAAAATCTCTACTCTGAGCTACATCGCTGGGGCCCTCATGTGTGCCATCCTGTTTGTGATCTTTGTAACTGCTTATTTGCATGACTTCCCAGTTTGCCTGGCCATTTACCTGTTGTCTGCATGCTGGTGGTGTAGACAGGGCATGAAAAAGCATGTGACCACAGCAGACAGTGTGGACTGACATCAGTAAAGTATAGGTTCCACTTTAAGGGCCCAACACCAGTTGTCTACACGTACGAGAGTGGCGTTTCTTTCTTCTGAAGATGTTGCtttcctaaataaaataatttgatgtTCATTTCTGAAGGGCAGCTTCCTACATTTTGTGAAGATGGTGAATATAACATAGCGGTGCTCAAATATCGGAGACCTGGATATGAAACCAAGTTAATGTAGCATCTAGATCATACATGTCTTGCTTGTACAGACTCTCAAGAGTCAGGCTAACCTAAACTGGGAATGTTTGacattcatttcatatttagtATTAATTACTATGGTATATTTTACTTACAGTGATAGATATAAGTTTCAATGATCCCTATTTGCATAAAAAATTCTGTAGTAcagatgttcagtgtgtgagtttagtcGCTCTGGTAGAGTTTAGCAGCTCTAagtttctaaacatgaaccagcacAGTTCTGTAGCAGATTATCTGTTGTAGTTTATCCAATCAAAtgcatttatatgaaatatttagctAAAGGCAGCACAATGGACCAGACACTAGCTAGAGTGTTAGATACATTGGATCAACAAGAggagagttttcacagatttttctcTGGGCTGATTAGTGAACTGACGACattgcttgtttaaaaaaaagtcaactaaAGAATGTTTAAACATGAATGGGCAGAcaagtatgtgtttattatcactttcaaattaaaaaaaaaatgttcaaggtCTGTGGTGCTAGTCAAAGTGTGTTACGtgccactatgaaacaaaatgtTCAATTGTCTTCATCTGTTTAATGGTTAAGAATTAAAACTCAaggttgtcaccattca

Function

NR:

description
PREDICTED: uncharacterized protein LOC107658872 isoform X1

GO:

id name namespace
GO:0016310 phosphorylation biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00030 Pentose phosphate pathway
ko00051 Fructose and mannose metabolism
ko00710 Carbon fixation in photosynthetic organisms

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922985.2 True 3820 mRNA 0.44 4 18781747 18787897

Neighbor

gene id symbol gene type direction distance location
gpr85 gpr85,LOC106576049,LOC107584006,LOC106609248 coding downstream 37585 18739775 ~ 18744162 (-)
tmem168a LOC108280006,LOC108425390,LOC103042505 coding downstream 106180 18665209 ~ 18675567 (-)
dock4b dock4b,LOC108279862,LOC108425388,LOC107656358,LOC106609220 coding downstream 188342 18484440 ~ 18593405 (-)
tnni4a zgc:101560,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC108425328,LOC107658770,LOC107584059 coding downstream 548008 18225500 ~ 18233739 (-)
tnnt2e LOC108425385,LOC108279691,LOC107658902,LOC107725993 coding downstream 625187 18145872 ~ 18156560 (-)
tfec tfec coding upstream 307495 19095392 ~ 19107426 (-)
lta4h lta4h,LOC107656327,LOC106576033 coding upstream 352548 19140445 ~ 19161281 (-)
cdk17 cdk17,LOC107656329,LOC107658862 coding upstream 402599 19190496 ~ 19247363 (-)
LOC117599463 NA coding upstream 464926 19252823 ~ 19254197 (-)
LOC117599464 NA coding upstream 472816 19260713 ~ 19262044 (-)
G284590 NA non-coding downstream 434911 18346453 ~ 18346836 (-)
G284559 NA non-coding downstream 596755 18180379 ~ 18184992 (-)
G284520 NA non-coding downstream 692805 18088654 ~ 18088942 (-)
G284352 NA non-coding downstream 880480 17901025 ~ 17901267 (-)
G284349 NA non-coding downstream 883517 17895335 ~ 17898230 (-)
G284862 NA non-coding upstream 32045 18819942 ~ 18823200 (-)
G284866 NA non-coding upstream 43028 18830925 ~ 18831139 (-)
G284882 NA non-coding upstream 73948 18861845 ~ 18862152 (-)
G284885 mdfic,LOC107095313,LOC106906624,LOC106523521 non-coding upstream 80160 18868057 ~ 18938095 (-)
LOC117599567 NA non-coding upstream 130499 18918396 ~ 18922897 (-)
LOC113532190 NA other downstream 33914 18698921 ~ 18747833 (-)
trnae-cuc_38 NA other downstream 569354 18212322 ~ 18212393 (-)
cald1a cald1,LOC107579938,LOC107656362,LOC107725991,LOC107583995 other downstream 570043 18156824 ~ 18211704 (-)
trnaa-ugc_14 NA other downstream 689203 18092217 ~ 18092544 (-)
trnaa-ugc_13 NA other downstream 691125 18090551 ~ 18090622 (-)
rap1b rap1b,LOC106576640,LOC107695907 other upstream 890386 19678283 ~ 19735232 (-)
G285607 NA other upstream 1525170 20313067 ~ 20320050 (-)
LOC113544587 NA other upstream 2672929 21460826 ~ 21471100 (-)
G286852 irf5,LOC107655585 other upstream 3698339 22486236 ~ 22489467 (-)

Expression


Co-expression Network