chst11 (chst11,LOC107580584,LOC107656313,LOC107743617,LOC107592229)


Basic Information

Item Value
gene id chst11
gene name chst11,LOC107580584,LOC107656313,LOC107743617,LOC107592229
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 7871744 ~ 7924698 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922999.2
ATGAAACAGATGCTGTTCGACCTGATGAGGATGAGCAGGATTTGCCGGATGGTCCTCGCCACATGTTTGGGATCTTTTATCCTGGTCATCTTTTATTTCCAAAGTATGTTCCAGCCAGTAATGAGACGGAACCCGTTTGCAGCAGAGGGCTGCTGTAGGAGAGGCTCAAGAAATGCGCTGCAGGAGCTTTATAACCCCACACAGGCGGAGTTCTCAAGAGCAGCGCTTCTCCATCAGGCTCGGCGTGACCAGGTGGCCCAGACATGTCGTGCCCACAGTGCCTTGAGCCGCAAGCGACACGTACTGACACCCAGCGACCTAAAACACTTAGTAGTGGATGAAGAACATGAGCTGATCTACTGCTACGTGCCCAAAGTGGCATGCACCAACTGGAAGCGGGTGATGATGGTCCTGAGTGGGCATGGCAAGTACAGCGATCCTATGGAGATCCTCCCCAGTGAGGCACACGTGCCCTCCAACCTGAAGACACTCAACCAGTACAGCATCGCTGACATCAACCACCGCTTGAAGAACTACCTCAAGTTCTTGTTTGTGCGCGAGCCCTTCGAGCGCCTAGTGTCGGCATACCGTAACAAGTTCACACTGCGCTACAACACGTCCTTCCACAAGCGCTACGGCACGCGTATTGTCAGGCGGTACCGCAAAAATGCTACGGCCGAAGCGCTCCAGAATGGCAGTGATGTCAAGTTCACAGAGTTCGCTGAGTACCTCATCGATCCAGCCACGCAACGTGAGGCGCCACTGAACGAGCACTGGCAGACTGTGTATGCGCTGTGTCACCCCTGCCACATCCACTACGACCTGGTGGGCAAGTACGAGACACTGGAGGAGGATGCTGACTACGTGCTGAAGCTGGCTGGTGTGCCTGACTCGCTACATTTTCCATCCTATGCCAAGTCTACTCGCACCACCGACcagatggcagccatgtttttcaaCAACATCAGCGCGCAGCAACAGAGCCAGCTCTATCAGCTTTACAAGATGGACTTCCTGATGTTTAACTACTCCTCACCAAGTTACCTGAAGGAGCAGTAGGAAGGGTTGGCGCACAATGCACGCACATTTTTAAACGCACACCTGTGCAAACACATACTCAAAGCTGAGCTTAACTGAAACAGAACATTGATGTGAGGAGAAATGGCCAGTGAGGTGCTTGATGAATTGGCACCAGTGGAAGCAGAGCAAAAAACTCTGAACTTTTGGAGACTTTTGGAACTGTATAATCCACAGGTGGTCAGTCTGCTGTATTGTGAAGAGGAATGATTAAACAGAGGAAGATTTGTACTGTATTTGATCATGGTTTCATGTTTGATGAGTATTCAGGTAAACCTGGCATCTCTGTGTTAATACACCCGTCCATCAGATTGTAAGATAAAGATCATGTTACTGTTTATATTCCCTGCCATCATTAAGCAATACGACTCTGGGCCACAGGCTCATTTACTGTAACAAGTAAAGATCTCACCCGCCTACCTTCAATTTCAAACACTTGATGAGCGAAAGACTCTTGTGGACTTCTATTACACCCCAATACAGTACTAAAGTTGTGGGCTGTACTTAAGCACGCTCATGTTAGTGTTATTTATGGTTGTTCCCCTAACTACAGCCGTCTTCTATGTGAAGACTGTGTGCGTGTACAGTAATTATATGATGCATATGTAAAGGAGGACCTTTGCGTTCACACAGGAGGATGTGATAATGGCATTGAGAGGTGCCTTTGTGATGTGGGTGTATCCTGCTGCCCTTATGAGTCAGTGGCTATCCGGCATTCAAAAGTCAGAGGTCGGCGAGAGgtcattattcattaaaggGACTCCCAAGAACCATCAGCcatcttaaaaaaatattaagggaatatttcttgtttttgcattgtttttattgACTTATGAAAGGTAGCTGCGAGCAGCTgaacaaaacattatttaaaatactttgtaaaaagaaacaaaagaaagcacgatttaattttttttctctgagtgATGGATTTATAAATGGCAGTAttgatttttaatgtgttttttttttcatgtgcatTATATGGTACAGTGTTGCTGAGCTCTAGAGTGgatcatgtttttaaaaggaaagcaAAGTCTCTGCTTTCTGAGCTGTTCTCATAGGAGCAATTTATTTAGACAGActgagagtcagagagagagagcaaaggagATGAGATGGGAGAAAGTGCTAGACAGTATCTGTTTCCTGCATTAAGCCCATGTTTGTTCCATTGTAGCGTCTCTATCCCAATTTAAGCTCTTCAAAGGAACACATGCTTTCATTTGTAGATGTGTCTTTTTATGGCCCTTTTTTGTTATGACTGTGAATTAGAAGAGtctgaaaatgatgaaattgcCTATTTATGTGTCTGACAGCCACAGACGGGTGTGTCTGTCTCCACCGTCTGTGTCTACACGACTATACAAAAATCCTACACTGGTAAAGGTGACTCAGTCTAACACCAGCTTTCTCTTTCATCCGGATGGCTGGACAGATTAGTGTGCCTAGATAAATAAat
>XM_026923000.2
catcagcagaTCGCGactcagactcacacacacacactcacacacacacgcgccgGTGCTCGTGTCTCTGTGTCTCCgtgtccctgtctttctctccgcCGAGCCATGAAACAGATGCTGTTCGACCTGATGAGGATGAGCAGGATTTGCCGGATGGTCCTCGCCACATGTTTGGGATCTTTTATCCTGGTCATCTTTTATTTCCAAATAATGAGACGGAACCCGTTTGCAGCAGAGGGCTGCTGTAGGAGAGGCTCAAGAAATGCGCTGCAGGAGCTTTATAACCCCACACAGGCGGAGTTCTCAAGAGCAGCGCTTCTCCATCAGGCTCGGCGTGACCAGGTGGCCCAGACATGTCGTGCCCACAGTGCCTTGAGCCGCAAGCGACACGTACTGACACCCAGCGACCTAAAACACTTAGTAGTGGATGAAGAACATGAGCTGATCTACTGCTACGTGCCCAAAGTGGCATGCACCAACTGGAAGCGGGTGATGATGGTCCTGAGTGGGCATGGCAAGTACAGCGATCCTATGGAGATCCTCCCCAGTGAGGCACACGTGCCCTCCAACCTGAAGACACTCAACCAGTACAGCATCGCTGACATCAACCACCGCTTGAAGAACTACCTCAAGTTCTTGTTTGTGCGCGAGCCCTTCGAGCGCCTAGTGTCGGCATACCGTAACAAGTTCACACTGCGCTACAACACGTCCTTCCACAAGCGCTACGGCACGCGTATTGTCAGGCGGTACCGCAAAAATGCTACGGCCGAAGCGCTCCAGAATGGCAGTGATGTCAAGTTCACAGAGTTCGCTGAGTACCTCATCGATCCAGCCACGCAACGTGAGGCGCCACTGAACGAGCACTGGCAGACTGTGTATGCGCTGTGTCACCCCTGCCACATCCACTACGACCTGGTGGGCAAGTACGAGACACTGGAGGAGGATGCTGACTACGTGCTGAAGCTGGCTGGTGTGCCTGACTCGCTACATTTTCCATCCTATGCCAAGTCTACTCGCACCACCGACcagatggcagccatgtttttcaaCAACATCAGCGCGCAGCAACAGAGCCAGCTCTATCAGCTTTACAAGATGGACTTCCTGATGTTTAACTACTCCTCACCAAGTTACCTGAAGGAGCAGTAGGAAGGGTTGGCGCACAATGCACGCACATTTTTAAACGCACACCTGTGCAAACACATACTCAAAGCTGAGCTTAACTGAAACAGAACATTGATGTGAGGAGAAATGGCCAGTGAGGTGCTTGATGAATTGGCACCAGTGGAAGCAGAGCAAAAAACTCTGAACTTTTGGAGACTTTTGGAACTGTATAATCCACAGGTGGTCAGTCTGCTGTATTGTGAAGAGGAATGATTAAACAGAGGAAGATTTGTACTGTATTTGATCATGGTTTCATGTTTGATGAGTATTCAGGTAAACCTGGCATCTCTGTGTTAATACACCCGTCCATCAGATTGTAAGATAAAGATCATGTTACTGTTTATATTCCCTGCCATCATTAAGCAATACGACTCTGGGCCACAGGCTCATTTACTGTAACAAGTAAAGATCTCACCCGCCTACCTTCAATTTCAAACACTTGATGAGCGAAAGACTCTTGTGGACTTCTATTACACCCCAATACAGTACTAAAGTTGTGGGCTGTACTTAAGCACGCTCATGTTAGTGTTATTTATGGTTGTTCCCCTAACTACAGCCGTCTTCTATGTGAAGACTGTGTGCGTGTACAGTAATTATATGATGCATATGTAAAGGAGGACCTTTGCGTTCACACAGGAGGATGTGATAATGGCATTGAGAGGTGCCTTTGTGATGTGGGTGTATCCTGCTGCCCTTATGAGTCAGTGGCTATCCGGCATTCAAAAGTCAGAGGTCGGCGAGAGgtcattattcattaaaggGACTCCCAAGAACCATCAGCcatcttaaaaaaatattaagggaatatttcttgtttttgcattgtttttattgACTTATGAAAGGTAGCTGCGAGCAGCTgaacaaaacattatttaaaatactttgtaaaaagaaacaaaagaaagcacgatttaattttttttctctgagtgATGGATTTATAAATGGCAGTAttgatttttaatgtgttttttttttcatgtgcatTATATGGTACAGTGTTGCTGAGCTCTAGAGTGgatcatgtttttaaaaggaaagcaAAGTCTCTGCTTTCTGAGCTGTTCTCATAGGAGCAATTTATTTAGACAGActgagagtcagagagagagagcaaaggagATGAGATGGGAGAAAGTGCTAGACAGTATCTGTTTCCTGCATTAAGCCCATGTTTGTTCCATTGTAGCGTCTCTATCCCAATTTAAGCTCTTCAAAGGAACACATGCTTTCATTTGTAGATGTGTCTTTTTATGGCCCTTTTTTGTTATGACTGTGAATTAGAAGAGtctgaaaatgatgaaattgcCTATTTATGTGTCTGACAGCCACAGACGGGTGTGTCTGTCTCCACCGTCTGTGTCTACACGACTATACAAAAATCCTACACTGGTAAAGGTGACTCAGTCTAACACCAGCTTTCTCTTTCATCCGGATGGCTGGACAGATTAGTGTGCCTAGATAAATAAat

Function

symbol description
chst11 Enables chondroitin 4-sulfotransferase activity. Acts upstream of or within chondroitin sulfate biosynthetic process; motor neuron axon guidance; and muscle organ development. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Is expressed in several structures, including central nervous system; notochord; pectoral fin bud; spinal cord neural keel; and spinal cord neural tube. Orthologous to human CHST11 (carbohydrate sulfotransferase 11).

NR:

description
PREDICTED: carbohydrate sulfotransferase 11 isoform X1

GO:

id name namespace
GO:0007517 muscle organ development biological_process
GO:0030206 chondroitin sulfate biosynthetic process biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047756 chondroitin 4-sulfotransferase activity molecular_function

KEGG:

id description
K01017 CHST11; chondroitin 4-sulfotransferase 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922999.2 False 2548 mRNA 0.46 3 7871744 7924593
XM_026923000.2 True 2638 mRNA 0.46 3 7871744 7924698

Neighbor

gene id symbol gene type direction distance location
c18h12orf45 c19h12orf45 coding downstream 41606 7826289 ~ 7830138 (-)
scube1 scube1,LOC107592233,LOC107726032 coding downstream 85265 7701032 ~ 7786479 (-)
mpped1 mpped1,LOC107726058,LOC107658834,LOC107592234,LOC107656320 coding downstream 181608 7643447 ~ 7690136 (-)
trnal-aag_11 NA coding downstream 277936 7593727 ~ 7593808 (-)
pnpla3 LOC108279447,LOC108428138 coding downstream 279704 7560149 ~ 7592040 (-)
LOC113531950 NA coding upstream 8275 7932973 ~ 7936791 (-)
hcfc2 hcfc2 coding upstream 21712 7946410 ~ 7956609 (-)
c18h12orf66 c19h12orf66,cunh12orf66,LOC107592225,LOC107658829,LOC107726025,LOC107743608 coding upstream 178776 8103474 ~ 8114786 (-)
si:ch73-139j3.4 NA coding upstream 296854 8221552 ~ 8226121 (-)
tymp tymp,LOC104957567 coding upstream 315057 8239755 ~ 8247746 (-)
LOC117599592 NA non-coding downstream 337462 7530784 ~ 7534282 (-)
G278312 NA non-coding downstream 375481 7495572 ~ 7496263 (-)
LOC117599447 NA non-coding downstream 455673 7414348 ~ 7416071 (-)
G278275 NA non-coding downstream 642304 7229005 ~ 7229440 (-)
G278265 NA non-coding downstream 797159 7071746 ~ 7074585 (-)
G278911 NA non-coding upstream 292315 8217013 ~ 8217293 (-)
G278920 NA non-coding upstream 314276 8238974 ~ 8239676 (-)
G278963 NA non-coding upstream 464800 8389498 ~ 8390559 (-)
G279064 NA non-coding upstream 687420 8612118 ~ 8612342 (-)
LOC117599455 NA non-coding upstream 773732 8698430 ~ 8698791 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 371665 7421988 ~ 7500079 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other downstream 1866615 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other downstream 1887180 5982292 ~ 5984564 (-)
tmpoa LOC108279628 other downstream 2887429 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 3132745 4734931 ~ 4738999 (-)
avpr1ab LOC108279517 other upstream 42121 7966819 ~ 7970571 (-)
G278634 NA other upstream 128390 8053088 ~ 8068077 (-)
G278912 NA other upstream 293863 8218561 ~ 8219680 (-)
G279415 NA other upstream 1282653 9207351 ~ 9208563 (-)
cracr2ab LOC108280118 other upstream 1953783 9878481 ~ 9892386 (-)

Expression


Co-expression Network