strap (strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684)


Basic Information

Item Value
gene id strap
gene name strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4988481 ~ 5003791 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923007.2
agcgttagcattagcattagcgaTTTTCCCCGTGTGAAACAGTGGGCAGCGCTGTTCCGGTGTAGCTGCAGCCGGTGGCACAGCACTTTGCACTGGGTGCGCGGCTCTTCGTTAAGCTCTCCGCGTCAGGAAATCCACCTTTAGTGCTCTGTCCTGCCTGGAGAAACCGTTGTCGTGTTGTTTACGTTGCTGTCTGCGTGGACAGGTTTACTCTGGAGAAATGGCTATGAGGCAGACTCCTCTCACATGCTCCGGTCACACCAGGCCTGTTGTGGATCTGGCCTTCAGTGGAATCACTCCTTATGGCTATTTTCTCATCAGTGCTTGTAAAGATGGTAAACCAATGTTGCGCCAGGGAGACACAGGGGACTGGATCGGGACGTTCTTGGGTCACAAAGGTGCTGTTTGGGGCGCCACCTTAAATAAAGAAGCCACGAAGGCAGCTACCGCGGCTGCCGATTTCTCTGCAAAGGTGTGGGACGCAGTCACGGGAGACGAGGTCCTCACCCTGGCGCACAAGCACATTGTCAAATCTGTTAACTTCACGCAGGACAGTAACTGCCTTTTGACCGGAGGAAATGATAAAGTGCTGCGTATTTATGACCTCAGCAAGCCGGAAGCAGAGCCGCGAGAGATCTCGGGCCACACTGCAGCCATTAAGAaagcgctgtggtgtaacagCGACCAGCAGATCCTCTCTGCGGCGGAGGATAAAACCATACGTCTCTGGGACAGAAACACGGGAGAGGTGGTGAAGACGCTGTCGTTCGAGGCGTCCGTGGGCAGCATGGAGTACGTCCCCGACGGCGAGATCCTCGTCATCACCTACGGAAGGACCATCGCCTTCTACAAAGCTCAAACCCTGGACCTGATCAAGACCGTGGACGCTCCGGCCTCCATTCACTCCGCCTCCCTGCATCCTGACAAAGACTTCTTTGTCGCAGGAGGAGACGACTTCAAGCTCTACAAATACGACTACACCACCAAGGAGGAAATGGAGTCGTATAAGGGTCACTTCGGGCCTGTGCACTGTGTGCGCTTCAGTCCTGACGGAGAGCTGTACGCCAGCGGCTCTGAGGACGGGACGCTGCGCCTGTGGCAGACTGCCGTAGGGAAAACGTACGGACTGTGGAAGTGCGTGCTGCCCGAGGAGCTGTCTTCGGAGAACTCAGACGCTCTGTACTGCCCTCCGGCTGAGATCAAGGCCTGAGGCGTGGACCGGGACGAGCGAGCGGCGAGCAGAAGAGAGGAGAGGTCCAGGACCGGTCCAGATCAGATCCCCTGCAGAGTGCTGTGCCACCTCAATCTCCATCATCtagtaaaaaatacataatcgAGAAACAACAAACGGCCCGCGGAGCTGAGCTTAACACGGGGGAGTGCGGGGAAATCCAGCAGCGCGTCACGCTACACGACCCAGACCACGCACCAGGAGGCAGTAGTAGAGATGGGAGTGCTCGCGTTCCGACTCCCAGCTGCCTGCTCGCTCTCTGATGCTGTTCAACACCATCCGGCTCCTCCACCGCGCTGCGATCAGTTACTTCACTTTCATTATTGTatcgtttttttgttttgttattgttttttttttcccagaatatGTAAAATTTGtgcttttaaacaaacaaaaagaaaaaagggataCACAGTGTTTCTATTCAGTTTATTGATCTCAGTGACGGTGATCCTGAGGCGTTACGTCACATGTGGTGTCTTGGTGTATTATAATCACCCGTTGAGGACGTCAATTTTGGGGTGTTTTTTGAAAAGTAACAAGTAAaactgacttaaaaaaaaaagtgacttaaGTTCTTGACTATGGTTTTTCTTTGCAACATGCGAGCTGTAATGTGTGGTCAATAAAACGTTAATGAGATACCA

Function

symbol description
strap Predicted to enable kinase activity. Predicted to act upstream of or within phosphorylation. Human ortholog(s) of this gene implicated in adenocarcinoma; colorectal carcinoma; large cell carcinoma; lung carcinoma; and squamous cell neoplasm. Orthologous to human STRAP (serine/threonine kinase receptor associated protein).

NR:

description
serine-threonine kinase receptor-associated protein-like

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG:

id description
K13137 STRAP, UNRIP; serine-threonine kinase receptor-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923007.2 True 1881 mRNA 0.52 10 4988481 5003791

Neighbor

gene id symbol gene type direction distance location
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding downstream 23388 4954291 ~ 4965093 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding downstream 49668 4925716 ~ 4938813 (-)
gys2 gys2,LOC107659841,LOC107694689 coding downstream 70701 4897270 ~ 4917780 (-)
psmc2 psmc2,LOC103382982 coding downstream 195684 4784128 ~ 4792797 (-)
cd36 cd36 coding downstream 927967 4044706 ~ 4060514 (-)
sox5 sox5,LOC107725540,LOC107590035,LOC107587062 coding upstream 77021 5080812 ~ 5315907 (-)
bcat1 bcat1,LOC107725514,LOC107659834,LOC107587341 coding upstream 335982 5339773 ~ 5361979 (-)
casc1 casc1 coding upstream 401683 5405474 ~ 5419057 (-)
parpbp parpbp coding upstream 460522 5464313 ~ 5487007 (-)
th2 LOC108279869,LOC108437952,LOC107695848 coding upstream 510291 5514082 ~ 5528820 (-)
LOC113531850 NA non-coding downstream 43203 4943549 ~ 4945278 (-)
G276753 NA non-coding downstream 107473 4880418 ~ 4881008 (-)
G276761 NA non-coding downstream 111689 4817108 ~ 4876792 (-)
G276755 prdm4 non-coding downstream 144110 4801907 ~ 4844371 (-)
G276749 NA non-coding downstream 189324 4798659 ~ 4799157 (-)
G276980 NA non-coding upstream 103089 5106880 ~ 5110968 (-)
G276985 NA non-coding upstream 120682 5124473 ~ 5125478 (-)
LOC117599571 NA non-coding upstream 312116 5315907 ~ 5326714 (-)
G277065 NA non-coding upstream 352109 5355900 ~ 5358204 (-)
G277066 NA non-coding upstream 354660 5358451 ~ 5359228 (-)
tmpoa LOC108279628 other downstream 4166 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 249482 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 401385 4358625 ~ 4587096 (-)
LOC117599578 LOC108279645 other downstream 505916 4466061 ~ 4482565 (-)
LOC117599555 LOC108279645 other downstream 531360 4357539 ~ 4457121 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 977347 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 978501 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2418197 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 2963028 7966819 ~ 7970571 (-)
G278634 NA other upstream 3049297 8053088 ~ 8068077 (-)

Expression


Co-expression Network