gdi2 (gdi2,LOC108279819,LOC108436005,LOC107754057,LOC107560733,LOC107694307)


Basic Information

Item Value
gene id gdi2
gene name gdi2,LOC108279819,LOC108436005,LOC107754057,LOC107560733,LOC107694307
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9600577 ~ 9615300 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923063.2
ACCCCGTTCATCCAGCCTGTTTGACGTTCCACCGCTTCTTTCATTTCCAGCTTTGCCGCTGATCTCCATTTTCTTCTTCAGGCCCGACACACAGGAAAAGGGGATTAAACTCGTGAAgcaaaaatgaatgaagaataCGACGTTATCGTTTTGGGAACTGGACTTACGGAATGCATCCTGTCAGGGATCATGTCTGTGAAGGGAAAGAAGGTCCTGCACATGGACAGGAACTCGTACTACGGCGGAGACAGCGCCTCCATCACCCCTCTGGAGGACCTGTACAAGCGCTTCAGCTTGCCCGGTACCCCTCCAGAGTCGATGGGGAAAGGTCGTGACTGGAACGTGGACCTCATCCCCAAGTTCCTCATGGCAAACGgccaGCTTGTGCGCATGCTGCTGATCACACAGGTGACGCGTTACCTGGACTTCAAAGTGATAGAGGGCAGCTTTGTCTACAAGAAGGGCAGCATCTACAAAGTGCCCTCCACCGAGACTGAGGCTCTGGCTTCCAGCCTGATGGGGCTGTTTGAGAAGAGACGGTTCCGGAAATTTCTGGTTTTCGTAGCCAACTTTGATGAGAACGATCCCAAAACTATGGAGGGTGTGGATCCCAAAAAGACTACCATGCGTGAGGTTTACAAGAAGTTTGACTTGGGGCAGGATGTCATCGACTTTACAGGCCACGCCATTGCACTCTACCGCACAGATGAtTATCTGGATCAGCCCTGCCTAGACACAATAAATAGGATTAAGTTGTACAGTGAGTCCTTGGCGAGATATGGGAAGAGCCCCTATCTTTACCCACTGTATGGTCTGGGAGAACTGCCTCAGGGCTTTGCCAGATTAAGTGCCATCTATGGAGGAACCTACATGCTCAACAAGCCAATTGAAGAGATCATTGTAGAGAATGGCAAAATAGTGGGCGTCAAATCTGAGGGAGAGATTGCCCGCTGTAAACAGCTGATTTGTGACCCCAGCTACATCATGGACCGGGCCAAGGTCGTCGGCAAGGTGATCCGAGTCATCTGCATCTTAAGCCACCCCATTAAGAACACCTCAGACTCCAACTCTTGCCAGATCATCATCCCTCAGAACCAGGTCAACAGGAAGCACGATATCTACGTGTGCATGATCTCGTATGCACACAATGTGGCAGCGCAGGGTAAATACATCGCCATCGCCAGCACCACTGTGGAGACTAACGACCCTGAGAAGGAAATTAAACCAGCTTTGGACCTGCTGGAGCCTATCGAGCAGAAATTTGTGAGCATCAGTGATCTCTATGCTCCAACCGACTTGGGAACTGATAGCCAGATCTTCATCTCTCGCTCCTACGATGCCACGACCCACTTCGAGACCACCTGCGATGACATCAAGGACATCTACAAGCGTATGACTGGCACAGACTTTGACTTTGCCGAGATGGAGCGCAAGAAGAACGACATCTTTGGCGATGGGGGTGACCAGTAACTGAGCTCTTAACATTGTTGAATATCAGATATTCAGAGGATGGTAatctttaaggaaaaaaaaaaagaaaatttggaaaaaaaaatggtaaccAAAATGGGCTAGCTGATTCTCtcaaaagagtttttttttttttttctttccataaaGGAATTTCATGTATACAGTTACAGATTTAGCATTTAAAAGGGGAGATGGGTCAGGCCGTCTGCTTTGTATAATCAGGTTATGAGACATATTGCACTGATTGTTGGTTGATGTCCTGTATTCAGTTGCCATCATTGTGTTTTCACCCTGTTCACACAGGGAGGGCATTTAGTCCAAAGATGCCAAATCATCGGATGTTCTCAAGTGATATAAAGGCACAAGTAACAGagtgaattaaaaacaaagaagcagaagtatttttttataattatgtacAAAAACTTACAGATGGCCTCTCAAACAGAGGTGTCAAAAGTTTGCTTGATTTTAAGCTGCAATTACCAGCTTTTAATGCCAACCTCATAAGATTCAATACATTGTATTTTCTTACAGATTGGTGCTTTTACTAGTTACGGCAATGTAGCTAGCAATATGTCCAAACCTTGCTTTGCAAATGTAAGGGACGTGTCAAGAACACCAAATTCATATAACCTCTTCCTTTAATAATGCTTATCCAATCGCtgataatataaacatttatacaaatgaggattatatatatatacataatacaaaTGAAGACTTTGGCATAACTGTTAATAGGGATGGGAGTCTATGGGGGTTTTGCAGCTTTTGCCTTTACATCTCTGTTAAGAGGCAGTGTGTGATTCTTGGGCCACTCATATACATCATAGGTTAATAGAAAATATACTTAAATGATTAGCTCCAACCTTCCtgaaaattacacattttttgcacattttagttTGTGTGGCAATTATTACCTTCAAAAAGCCTCTAGCGTCTGTAACTGACTCCAGGTTGGAAATGAGCAATAAAGTAGTGCCAAGAGGGTTTTTAGAAGAGGTAACATTTGCTCTGTATTGATCCTtttaaaagcagtttttcaGTCATTCTACACCCCGTAGAAGCCTTTTGGAGgtaatttttaaaacactaaagtgtacacaaaatgtttttgatgaaAATGTCAGACTTTTCTTTAACGTTAGACTATGAAGCTGCTTGAACACTGTGCTCTTATTTTAGCAGCCGAGAGAAAAAGCTCTTGAAAACACATGAGAAAAGTGGCCTAGTTCTCCTTTATATCTCTTTTGCTTTAGAAAGGACCAAATGTCTACTGCAGTATTGACATGGCAGGGGCCCTGTGCAAAATGTCACCAGTGTTTTAATGAACGGAAGAACTGTGCTGAGCAGATGGGGCTCATATAATTTCTGTACTGCTTAAGTAAAAACATTAAGTAAAAACGTGTGAAATCa

Function

symbol description
gdi2 Predicted to enable Rab GDP-dissociation inhibitor activity. Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within protein transport and small GTPase mediated signal transduction. Predicted to be active in cytoplasm. Orthologous to human GDI2 (GDP dissociation inhibitor 2).

NR:

description
PREDICTED: rab GDP dissociation inhibitor beta

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0005093 Rab GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K17255 GDI1_2; Rab GDP dissociation inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923063.2 True 2898 mRNA 0.43 11 9600577 9615300

Neighbor

gene id symbol gene type direction distance location
asb13a.1 LOC108279822,LOC108436003 coding downstream 542 9594458 ~ 9600035 (-)
asb13a.2 asb13a.2,LOC108280001,LOC108436004,LOC103022068,LOC107754063,LOC107560715,LOC107655562 coding downstream 7311 9559911 ~ 9593266 (-)
mkln1 mkln1,LOC107754054,LOC107655615,LOC107560731,LOC107757245,LOC107587826 coding downstream 177309 9392029 ~ 9423268 (-)
LOC113531956 LOC108279597,LOC108279598 coding downstream 241527 9350878 ~ 9359050 (-)
LOC113532331 LOC108279597,LOC108279598,LOC105020203,LOC105912087 coding downstream 253531 9338768 ~ 9347046 (-)
ankrd16 ankrd16 coding upstream 2108 9617408 ~ 9623595 (-)
trnay-gua_2 NA coding upstream 7233 9622533 ~ 9622619 (-)
pcloa pclo,pcloa coding upstream 14031 9629331 ~ 9698196 (-)
sema3aa LOC108280003,LOC108436009,LOC103023715,LOC107562295,LOC107757236,LOC107560735,LOC107694310 coding upstream 92150 9707450 ~ 9742678 (-)
tspan11 tspan11,LOC108279944,LOC107720401,LOC107593980,LOC107560736,LOC107694254,LOC108436010,LOC107690651 coding upstream 140285 9755585 ~ 9854329 (-)
G279641 NA non-coding downstream 67156 9533222 ~ 9533421 (-)
G279625 NA non-coding downstream 80499 9519833 ~ 9520078 (-)
G279624 net1 non-coding downstream 80850 9517986 ~ 9519727 (-)
G279621 NA non-coding downstream 114808 9485067 ~ 9485769 (-)
G279620 NA non-coding downstream 115629 9484093 ~ 9484948 (-)
G279728 NA non-coding upstream 9299 9624599 ~ 9625119 (-)
G279730 NA non-coding upstream 12037 9627337 ~ 9629153 (-)
G279832 NA non-coding upstream 188878 9804178 ~ 9804403 (-)
G279967 NA non-coding upstream 332031 9947331 ~ 9947536 (-)
G280002 NA non-coding upstream 389041 10004341 ~ 10004812 (-)
G279415 NA other downstream 392014 9207351 ~ 9208563 (-)
G278912 NA other downstream 1380897 8218561 ~ 8219680 (-)
G278634 NA other downstream 1532500 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 1630006 7966819 ~ 7970571 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 2100498 7421988 ~ 7500079 (-)
cracr2ab LOC108280118 other upstream 263181 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 640672 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 1379805 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 1463868 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 1623635 11238935 ~ 11259412 (-)

Expression


Co-expression Network