sema3aa (LOC108280003,LOC108436009,LOC103023715,LOC107562295,LOC107757236,LOC107560735,LOC107694310)


Basic Information

Item Value
gene id sema3aa
gene name LOC108280003,LOC108436009,LOC103023715,LOC107562295,LOC107757236,LOC107560735,LOC107694310
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9707450 ~ 9742678 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923102.2
gTCAGACCTGTGCACAGGGGTGTCTTTTCTTCAATCGTTCACCCCCCTCCTCCACCTTCAGCTGCgctccttctctccctcccttctctcctcccctcccctcccctccgCTCTTGTGGATGGTGTAGTgctctgtctttccctctcagTCTGCCTGTGCAGTGGACAGGaccagaagtgtgtgtgttagagtgtgagtgagtgagtgtgaagcGTGGATGTTACGGGATCCATGACAAAGTCTCCAGTCCCTGGACACAGATTCACACTCAGCGCCTTACAGAGACAGCCAAAGAGGAATACACCTTAAACCCTAACACACCTCACACCCCCTTCTACATTCCCAACCACATGGAGCCATGTGAGCTCCTGTCTGCCTCGTTGGGAATCTGACTCGGATTGCCTCCTGTAGAGACGCTCACAGCTCTGGATCTGCCTcggagagcagagagaggagaggagcgaCTGCAGAGATCTTCACCCAGGAGAGAAGTACTCTTCCCTGGGCGCTGTGGGCCGGGAGCCCCCCGTGGGCTGGAGACCGGCGCTCCAGCACCATGGATTACCTGCTTGGGATTGTAGTCCTGCTGGGCATGGCGGCTCTGCCCGGGAGAGTGGCCCTGCAGAACCCCAAGAGGAACGTTCCCCGGCTCCGGCTCTCCTACAAGGaaaTGTTGGACTCCAGTAATTTAGTGACTTTCACTGGAATAACAAACAGTTCAGGTTACGACACATTTCTAATGGATGAGGAGCGAGGGAGGTTACTAGTAGGAGCAGAGGACCATATCTTCTCTTTAGACCTCGTCAACATTAACAGAGATCTCAAACAGATCGCCTGGCCGGCCACACCTTCAAAACGAGACGAGTGCAAGTGGGCAGGAAAAGACCTCGGAAAAGAGTGCTCCAACTTTGTGCGGGTGCTGCAGTCCTACAACCAAACACACCTATATGTGTGTGGCACGGGAGCATTTCACCCAATATGTGCCTATCTGGAGATAGGCAAAAGAGCAGAgGACAATATTTTCAGGCTGGACACATCCCACTTTGAGAATGGCCGCGGGAAAAGCCCCTATGACCCAAAGATGCTGTCATCCTCTCTGCTAATTGATGGGGAATTATATTCTGGAACTTCGGCAGATTTCATGGGACGAGACTTTGCCATTTTCCGAACCCTCGGAGCTCATCATCCGATCCGGACAGAGCAGCATGATTCCAGATGGCTGAACGATCCCAAGTTTGTTGGCATTCACCTCATCCCTGAGAGCGATAACCCAGAAGACGACAAAATCTTCCTGTTCTTCAAAGAGAACGCCATGGACGGAGAACACACAGGCAAAGCCACCATCTCCAGAATAGCACAACTGTGTAAGAATGACGAGGGAGGACACAGGAGTTTGGTGAACAAATGGACTACATTTCTAAAAGCTAAACTGACGTGTTCTGTCCCAGGGCTCAACGGCATTGACACACACTTCGATGAGCTCCaggatgtgtttttaatgAGTGCAAAAGACCCAAAGAACCCAGTGATCTATGCGGTCTTCACTACCTCCAGTAACATCTTTCGTGGGTCAGCGATCTGCATGTACAGCATGGCTGACATCAGGAGGGTGTTTCTGGGCCCTTATGCCCACAGAGATGGTCCAAATTACCAGTGGGTGCCCTTCCAAGGCAGGGTCCCATACCCCCGCCCTGGCACATGCCCCAGTAAAACCTTTGGTGGTTTTGACACCACCAAAGACCTCCCAGATGACGTTATTACATTCGCTCGTCTGCACCCTGCCATGTATAACCCAGTGCAGCCGGTTGGTGGACGACCCATTGTGGTGCGCACAGATGCAGAGTACCAGTTCACCCAGCTGGTGGTGGACCGTGTGGAGGCTGAGGATGGGCAGTACGATGTGATGTTCATCGGCACAGatATGGGGACAGTGCTGAAAGTGGTGACCATCCCCAGAGAGAGTTGGCATGACCTGGAAGAGGTGGTGCTGGAGGAGATGACCGTCTTTAGGgAACCCACCCCTATCACAGCTATGGAACTCTCCACTAAACAACAACAGTTGTACCTGGGTTCAGAAGTGGGAATATCGCAAATGCCGCTGCATCGCTGTGAGGTATACGGCAAAGCGTGTGCTGAATGCTGTTTGGCCAGAGATCCATATTGCGCCTGGGACGGCACTGAGTGCTCCAGATACTTCCCCACTGCTAAGAGGAGAACAAGGCGTCAAGACATCAGAAATGGAGATCCTCTGTCCCAGTGCTCCGATCTGCAACACAATGATGATCTGGAGGGCTACAGCAGTGTAGAAGAGAGGAATGTATATGGTGTGGAGAACAGCAGTATGTTCCTGGAGTGCAGTTCTAAATCTCAGAGAGCTCTCATCTACTGGCAGCTACAGAAGCCCAATGATGAGCAAAAGCTTGAgATTAAGTTGGATGAGAGAGTGAGTCACACCGAGCGTGGCTTGTTAATCCGCAGCCTGACGCAAGCTGACACCGGAGTGTATCACTGCCATGCTGTGGAGCACGGCTTCATCCAGCCACTCCTGCGCCTCACTCTGCAGGTCATCCCGTCTCAGCGTGTGGGGGAGCTGCTCCTGCGGACCGGTGCTGTCGATCGCGACTCGCCTGCCAAACAAAAGATTTGGTACCGAGACTTCCTTAGTTTGCTGGAGCACCCGGACCTCAACAGTGTGGATGAGTTCTGCGAGCATGTCTGGAAAAAGGAGCGCAAGCAACGTGGCAAGAAAGCTCCAAAAGCAGGGCTCGGGCTCACTCAGGCTCAGGCACAGGCACAGAAGAGCAGCCAGAATTTACAGACTTCAGCCCAGATTCAGAGTGATGGCCCAAAAGCAACAAATGTTCCAAATCTGCCCAAAATACAGAGAAGCCAAGTCCCACAGGGAACCACCAGCACGGACAGCCAGAGCCCCAAGCCGAGTCCTAGCACCACCTCGAAACTCCCAAGTGCTCAGGCAAACCAGAACCAGAGTCAGGGAAAGAGGGGCAACTCACCAGCCCGAAGAGCACCAGCCAGCACAGCCAAGTGGAAACAGCTCCAGGAGAATAAGAGGGGGCGCAACAGGCGCACCCACGAGCAACAGAGACCACCTCGCAGTGTGTGAgacaagcatacacacacacacacacacacaaacatcagacCCATCCATTCACACATGCCGACTTTGATTCAGCAGTCCACATACATGTGTATGttgcaaacatttaaacaaaagcacaaaaatacTGGATGTACTAGTTGGAGAAATTTGTCACTACTTTACCAGAGGAAGCACAATTACAGTGACATAATGGCGAAAACATTTATCAGTAATGTGTATAGTTGTGGACTGATACACCTTCCTGTACATAGAAATGTTTCTATAGTGTATGAGTCCCCTAAGACTCTTTACTCCTGGACTGAGAGAGGGGAATTGCCATTTCCAAGACTGTTTCCTTTGCTGAAACATCTGTTGCGAAGTGGCCGAAAAGCTTCCATGGAAACCAAGATGATTTATTCAGGAATAAAACCAGAATGTTGACTATTTACTTAAATTCTTCCTGGAGGATTGTACCTGTTACTATGGTTCTGGATCAGACAATATGGACTGCCTTCCAGCCCAAAAGAtacttatataaaaaaaaaaaaaaactacggGAACTGGAGTCTCGTTGGTCTGATTCATAATGCAGTGTTATAGGAGTAACTATAGTGGACActgtataggaaaataactgaGTATCCATGCATACAAGACGTGGTTGGCCAAAACGTAGGCATGTGTTGCTACCAGCCCGTCTGACCCTTGTAACCATTTGACTTAAATGTTAGCCTAATTATTTGTtgtatattcataataaacGAATCACCCAAATGGACTAAGAAGTCAAAACCTGTGGAAACTATTTGCCCTAAAGTACAGAATTTAAATATGTTGTGCATGATGTTTAATTGaatacaaaatctttttttctgaattaaGTTGCATAGCGAAACTATTAAACACAGAGTTTCAAATTACAGGGGGTCTTAAGAattttttgatttcatttaagataaaaaaaatgtcttgtgcCAACCGTTGCATCGAAGGTGCTATGTTTGGTTATTGCTACATcatcaaaaaaaagttttttattttttaagttatttttatGCCTCATACAAATGTGCTCTTGCAGTCTATGTCGTAGCTTAGGCTGaaagtgtaaatatatacagtcaggcAACTCATGACTATTTATTGCTGATTTTTAAAGGGTTACAGTTATTTTTGATATTGTAATGTTTTGAGctcaaatgtaaacaaaagtgACTGAAATATGACAAAGCACATGGATGGACCAATAACCATTGCCTTTTTTAGTTGAACATATTACTTCTAAGAACCCAGAAACATGCaaaaatttagtttaatttttaaatatctttttttctgtcactcacctctgtgtgtctctttagTCTTCACATTTTCTCTGTAATGCCCCCAAACAGATCTgtctatatttctgtatttgtatgaATGACTCATTCATGAAATTGCAAAATATTATGGAGCTATGAACAATTTGTAAGAATGCCATTAGATGTGAGACTCCTGTAGAAATGTGTAGGCTAAACATTTGACTGACAGCCACTGAGTACGAACCGCATGTGCATTCGAACCCTAGTGTATCTCCTTTACtgtcagtgttttgtgtgtgataATTTCCTTTCCATGAATATAAAAGATGtgaacatttttgtttcattttaataagacaataaaaataccCGCCCCCTTTTGTGCATTATAAAGCTGTAATCTTTTGTACAAATACCCCCCAGAACTGTATGATGTTTCAATGCAATACAGAGCACTCCCAGTGTTTCTTGCTTCAGACATGTTTTGTCTGGTGGAGATGGGGAAATCTAAGGGAGACAGGAGCTCTTATAACTGTCACTGGGTGTTTCAGGCATGTTTTCGGttgtctaaataaatatttcctctATCATTA

Function

NR:

description
PREDICTED: semaphorin-3aa isoform X1

GO:

id name namespace
GO:0048755 branching morphogenesis of a nerve biological_process
GO:0048844 artery morphogenesis biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0035441 cell migration involved in vasculogenesis biological_process
GO:0005576 extracellular region cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923102.2 True 5004 mRNA 0.47 17 9707450 9742678

Neighbor

gene id symbol gene type direction distance location
pcloa pclo,pcloa coding downstream 9254 9629331 ~ 9698196 (-)
ankrd16 ankrd16 coding downstream 83855 9617408 ~ 9623595 (-)
trnay-gua_2 NA coding downstream 84831 9622533 ~ 9622619 (-)
gdi2 gdi2,LOC108279819,LOC108436005,LOC107754057,LOC107560733,LOC107694307 coding downstream 92150 9600577 ~ 9615300 (-)
asb13a.1 LOC108279822,LOC108436003 coding downstream 107415 9594458 ~ 9600035 (-)
tspan11 tspan11,LOC108279944,LOC107720401,LOC107593980,LOC107560736,LOC107694254,LOC108436010,LOC107690651 coding upstream 12907 9755585 ~ 9854329 (-)
ccdc59 ccdc59 coding upstream 152407 9895085 ~ 9897952 (-)
pik3cg pik3cg,LOC107656384,LOC107590535,LOC107658948,LOC107583938,LOC107705338 coding upstream 264520 10007198 ~ 10015790 (-)
lmod2b lmod2,lmod2b,LOC108411152,LOC101068860,LOC103382826 coding upstream 704987 10447665 ~ 10450902 (-)
asb15b LOC108280075 coding upstream 708900 10451578 ~ 10461046 (-)
G279730 NA non-coding downstream 78297 9627337 ~ 9629153 (-)
G279728 NA non-coding downstream 82331 9624599 ~ 9625119 (-)
G279641 NA non-coding downstream 174029 9533222 ~ 9533421 (-)
G279625 NA non-coding downstream 187372 9519833 ~ 9520078 (-)
G279624 net1 non-coding downstream 187723 9517986 ~ 9519727 (-)
G279832 NA non-coding upstream 61500 9804178 ~ 9804403 (-)
G279967 NA non-coding upstream 204653 9947331 ~ 9947536 (-)
G280002 NA non-coding upstream 261663 10004341 ~ 10004812 (-)
G280228 NA non-coding upstream 335408 10078086 ~ 10078356 (-)
G280233 NA non-coding upstream 345171 10087849 ~ 10088120 (-)
G279415 NA other downstream 498887 9207351 ~ 9208563 (-)
G278912 NA other downstream 1487770 8218561 ~ 8219680 (-)
G278634 NA other downstream 1639373 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 1736879 7966819 ~ 7970571 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 2207371 7421988 ~ 7500079 (-)
cracr2ab LOC108280118 other upstream 135803 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 513294 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 1252427 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 1336490 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 1496257 11238935 ~ 11259412 (-)

Expression


Co-expression Network