pah (pah)


Basic Information

Item Value
gene id pah
gene name pah
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5529156 ~ 5550953 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923147.2
TTGGGCAAAGTTGCAGAAAGTTGTTGAGAAAAATCCATTAAAACAGAACAAgtggagacacagagagagagagagagagagagagagagaagatggacACGGTGTTCTCTATGCTGAATGGAGACCCTGGAAAACAGGGCTCCATGTACCTGGAGGAGCAGATTAACAAGTCAGGCGTGCTGTCGTGTATTTTCTCTCTGAAAGAGGGGGTGGGAGCGCTGGTCAGAGCCCTCAGGCTGTTCGAGGAAAAGGGAATCAACCTGACGCACATCGAGTCACGGCCGTCGCGCATGAATAAGGACGAGTACGAGTTCTTCATCAGCGTGGACACGACATGCTCAAAGGCCCTGGACGAGGTCATCGACAGCCTGCGCACGCAAATCAGCGGTCAAGTGCACGAGCTGTCACGCAACAAGCAGAAAGACACATTGCCGTGGTTCCCCACAAACATCCAGGACCTGGACCGATTCGCCAACCAGATTCTGAGCTACGGGTCTGAGCTGGACGCCGATCACCCTGGATTTAAGGATGAGCTGTACAGAGCCAGACGAAAGGAATTCGCTGACATCGCCTACAACTACAGACATGGTCAGCCGATCCCACATGTGGAGTACACGGAGGAGGAGAAGGCCACATGGGGAACTGTGTTCAGGGAGCTGAAGTCCTTGTATCCCACTCACGCTTGTCGCGAGCACAACCGCGTCTTCCCTCTGCTGGAGGAGTACTGCGGCTACCGCGAGGACAACATCCCTCAGCTCGAGGAGGTCTCCAACTTCCTGCAGTcatgcaccgGTTTCCGTCTGCGCCCAGTGGCAGGGCTGCTGTCGTCTCGAGACTTCCTCGCTGGTTTGGCCTTCCGTGTGTTTCATTCCACCCAGTACATCCGGCACGGATCCAAGCCCATGTACACACCTGAGCCAGACATCTGCCATGAGCTGTTGGGACACGTTCCTCTGTTTGCGGATCCTAGTTTTGCTCAGTTCTCACAGGAAATTGGTCTGGCGTCCCTTGGAGCCCCTGACGAGTACATTGAGAAGCTTGCTACAGTTTACTGGTTTACTGTAGAATTTGGGCTTTGTAAGCAAGGCAGTGACATAAAGGCCTACGGAGCAGGTCTGCTCTCATCGTTCGGGGAACTACAGTACTGTTTGTCTGACAAACCAAAAATCTTGCCCTTCGAGCCAGAGAAGACCAGTGTGCAGAAATACCCCATCACTGAATTCCAGCCAATCTACTACGTGGCCGAGAGCTTTGAGGACGGCAAAGAGAAAGTCAGGAAGTTTGCTGCCACCATTCCAAGACCGTTCTCTCTGCGCTATAATGCCTACACTCAGAGCATCGAGGTTCTagacaacacaaacaaactGCGCAACCTGGCGAACAGCATCAGTAGTGAGGTGGGGATCCTGTGCAACGCTCTGCAGAAGATGGAGTAGAACAACTGCAGAACCATGGACAAGATCTTGAAGAACCTGTGATTAAAGAGACAGTTATGATGTTTAAATGATTTCACAATGTCAAATTCTTGTCCAAATGAGTTTTAAAACCCACCGTGCGCTCATACAGAGAGAAGTTTGATATGAAGTATGCTTGTAGACTTCTTgtattttagaaaatgtttatatcTCAGTATTTAAGCTGTAGTTTGTAGGCTGGAATATCTGTAGTCATTAATGTAGGTGAAAACACTATAGTTATTTGGTTGGACTATTAAATAATTTGTATGTTTTAATCTTCTTAATTAGTTTGGAAGACTCTTTAAATCAGTTTTGAACCTTATGCATCCTaacatttgtattgtttttaaatagcCTGCAATATTAATAATCATTGTCTAATTTGCAATACTTGCTAGAACTAATTACTATTATAATTGAATTTGTTTCTGACTGTTGACCaaactgtccttttttttagaaaaggaaaaaaagggacTTCCATTTGATGCAATTCCGGGTATATTACTAATTTCCTAATCTAATAGTAGACTTGTGCGtgcatatttcatttcagaagTAGCATTTCAAaaaacttattattttttttatgcatgaATTTGAAATATTCATACTCTAAATAGGGCACAAAACGCGCGTATTTCCCGTAAATAGCGTTTCCAGTCTCCAAATCATCCGACATTGCGCAGAGAACAGATCTGCCAGTAACCATCATCTCAAAATAACTGAGAATGTGATAATAACAGGCTACATTTAAAGTGGCTGCTCCATATTGTTTAATAAGCGTTTGACAAATAGACATAGAGACATAATGAGCTTAATGTATAATTAGCTTCATGTCACCGCCTCATAGAAATCTTTCTTATTTTAGCTTGtcgtttttttccctttatgcctgtttgtttaattgtatACAACTGTTCGACGAACATGTTTGTCTGACTATATTGGATAGAAATGATTACAATAAAATTGTGAGAAAATGCATGTGA

Function

symbol description
pah Predicted to enable phenylalanine 4-monooxygenase activity. Acts upstream of or within cellular response to estrogen stimulus. Is expressed in several structures, including digestive system; epidermis; eye; optic vesicle; and periderm. Human ortholog(s) of this gene implicated in intellectual disability and phenylketonuria. Orthologous to human PAH (phenylalanine hydroxylase).

NR:

description
phenylalanine-4-hydroxylase-like isoform X1

GO:

id name namespace
GO:0042221 response to chemical biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006559 L-phenylalanine catabolic process biological_process
GO:0004505 phenylalanine 4-monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0004510 tryptophan 5-monooxygenase activity molecular_function
GO:0016597 amino acid binding molecular_function

KEGG:

id description
K00500 phhA, PAH; phenylalanine-4-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923147.2 True 2449 mRNA 0.44 13 5529156 5550953

Neighbor

gene id symbol gene type direction distance location
th2 LOC108279869,LOC108437952,LOC107695848 coding downstream 336 5514082 ~ 5528820 (-)
parpbp parpbp coding downstream 42149 5464313 ~ 5487007 (-)
casc1 casc1 coding downstream 110099 5405474 ~ 5419057 (-)
bcat1 bcat1,LOC107725514,LOC107659834,LOC107587341 coding downstream 167177 5339773 ~ 5361979 (-)
sox5 sox5,LOC107725540,LOC107590035,LOC107587062 coding downstream 213249 5080812 ~ 5315907 (-)
LOC113532275 LOC108279443 coding upstream 14724 5565677 ~ 5625699 (-)
si:dkeyp-38g8.5 LOC108280028 coding upstream 233957 5784910 ~ 5790989 (-)
ucn3l ucn3 coding upstream 459337 6010290 ~ 6011543 (-)
col7a1l LOC108279990,LOC108435442,LOC107676908 coding upstream 462071 6013024 ~ 6112709 (-)
LOC113532437 NA coding upstream 482076 6033029 ~ 6033193 (-)
G277443 NA non-coding downstream 80469 5447151 ~ 5448687 (-)
G277066 NA non-coding downstream 169928 5358451 ~ 5359228 (-)
G277065 NA non-coding downstream 170952 5355900 ~ 5358204 (-)
LOC117599571 NA non-coding downstream 202442 5315907 ~ 5326714 (-)
G276985 NA non-coding downstream 403678 5124473 ~ 5125478 (-)
G277447 NA non-coding upstream 8981 5559934 ~ 5560322 (-)
G277494 dcn non-coding upstream 107531 5658484 ~ 5727420 (-)
G277506 NA non-coding upstream 110858 5661811 ~ 5663019 (-)
G277508 NA non-coding upstream 118615 5669568 ~ 5670534 (-)
G277519 NA non-coding upstream 179892 5730845 ~ 5731069 (-)
tmpoa LOC108279628 other downstream 544841 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 790157 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 942060 4358625 ~ 4587096 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 430185 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 431339 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 1871035 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 2415866 7966819 ~ 7970571 (-)
G278634 NA other upstream 2502135 8053088 ~ 8068077 (-)

Expression


Co-expression Network