exoc4 (exoc4,LOC107555552,LOC107585070,LOC107676929,LOC107690838,LOC107729851)


Basic Information

Item Value
gene id exoc4
gene name exoc4,LOC107555552,LOC107585070,LOC107676929,LOC107690838,LOC107729851
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 6166536 ~ 6316303 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923160.2
cttttgattggctgattttcCTCGGGTCAGTTGACACTGTTTGGGTGTAGAAGCGGAAAAATGGCAGCTGACACCGGGAGATACAGGACTGCAGTGTCCAAAAGCAAGGACCCTTCCAGTTTATTAATCTCTGTTATAAGGACTCTGTCAAACAGTGATGATGTGCAGGACCGGGAGACGGAGAAGAGCCGTCTGGAGGGGGCCTATGAGAAATGTGACCGAGATCTGGACCAGCTCATCGTTCAACACTACACCGAGCTCACCACAGCCATCCGCACCTACCAGAGCATCACCGAGAGGATCACCAGCTCGCGCAACAAGATTAAAcagGTGAAGGAGAACCTGCTGTCATGTAAGATGCTGCTCCACTGTAAGAGGGACGAGTTGAGGAAGCTGTGGATCGAGGGCATCGAGCACAAACACGTCCTCGAGCTGCTGGACGAGATCGAGAACATCAAGCAGGTTCCTCAGAAACTGGAGGCCTGCATGGCCAGCAAACACTATCTGCATGCCACTGACATGCtgGTGTCAGCGGTGGAGTCTCTGGAGGGGCCTCTACTGCAGGTGGAGGGTCTGAGTGACCTGCGGCTGGAGCTGCACAGCAAGAAGCTCAACATTCATCTGGTGTTGATCGATGAGCTGCACCGCCACCTCTACATCAAGTCCACCAGCCGCGTGGGCCAGCGGGGCAAGGACAAAGGACGACTCGGAgggtCTGCTCCAAAGGACTCGTCTATTTTGGAAGTCAGCAGTCTGTCCACTCCACGGAAACTCGCAGAGACGTCCCAGTTCAGCACTCCAGCAGCATCCAGcattcgaGATTTGCAGGACGATCTGGATGCGGACCCAGAAGAGAACAGTGCCGAGTTCATGGGGATCCTGATCAAGGCTTTGGCCAAACTCAAGAAGATCCCAGAGACCATTAACGCCATCATGGAGCGCCTGGAGCCAGAACTCAAGCAGATCCTTAAAAGATCCACCACCCAGATCGCAGACCACGCCTACCAGAGAGGAGAGAGCCTGGCACAGGACAACCAGCCAAAGCTGCTCCTGGAACTGCTGGAGCTGCTGTTTGACAAGTTTAACGCCGTCGCCACGGCTCACAGCATCGTTCTGAACCATCTGCAGCAGATCGTCGTGTCTCCCAGTGGAGCTCAGGAGGGCATCAAGCTCTATGAGCAGGCTGACGTCTCCGCCAAGATCCAGACCGTCCTACAGGTGCTCCTGATGGACTATCTGGATGTAAAGAACACGCGCAGTGCAGCCGAACCCTCAGCCCAGCTCTCCTACGCGAGCACCGGCGGTGACTTCGGAGCCTTTTTCGCCAAGAAGAAACCACTTCGACCCAAACAGTCTCTCTTCAAATTTGAGTCGTCCTCCCACGCCATAAGCATGAGCGCGTACCTGCGAGAACAGCGGCGAGAACTTTACAGCAAGAGCGGAGAGCTACAAGTGAAATCCAGAGAAAGATCTCATCACGGAGAGCTGATTGAATTAGCCGAGCGCTGAAATGATGACAGTTCGTGATCGTCTGAAATGGACTGAGGAGGTAATAACACACGGACACGGCAGCGTGTATTGATGGATGGGGTAAATATGGAGGAAAAGACAAGTAACGGGCTTCTGTTGTGTCAACTGCAG
>XM_034313148.1
cttttgattggctgattttcCTCGGGTCAGTTGACACTGTTTGGGTGTAGAAGCGGAAAAATGGCAGCTGACACCGGGAGATACAGGACTGCAGTGTCCAAAAGCAAGGACCCTTCCAGTTTATTAATCTCTGTTATAAGGACTCTGTCAAACAGTGATGATGTGCAGGACCGGGAGACGGAGAAGAGCCGTCTGGAGGGGGCCTATGAGAAATGTGACCGAGATCTGGACCAGCTCATCGTTCAACACTACACCGAGCTCACCACAGCCATCCGCACCTACCAGAGCATCACCGAGAGGATCACCAGCTCGCGCAACAAGATTAAAcagGTGAAGGAGAACCTGCTGTCATGTAAGATGCTGCTCCACTGTAAGAGGGACGAGTTGAGGAAGCTGTGGATCGAGGGCATCGAGCACAAACACGTCCTCGAGCTGCTGGACGAGATCGAGAACATCAAGCAGGTTCCTCAGAAACTGGAGGCCTGCATGGCCAGCAAACACTATCTGCATGCCACTGACATGCtgGTGTCAGCGGTGGAGTCTCTGGAGGGGCCTCTACTGCAGGTGGAGGGTCTGAGTGACCTGCGGCTGGAGCTGCACAGCAAGAAGCTCAACATTCATCTGGTGTTGATCGATGAGCTGCACCGCCACCTCTACATCAAGTCCACCAGCCGCGTGGGCCAGCGGGGCAAGGACAAAGGACGACTCGGAgggtCTGCTCCAAAGGACTCGTCTATTTTGGAAGTCAGCAGTCTGTCCACTCCACGGAAACTCGCAGAGACGTCCCAGTTCAGCACTCCAGCAGCATCCAGcattcgaGATTTGCAGGACGATCTGGATGCGGACCCAGAAGAGAACAGTGCCGAGTTCATGGGGATCCTGATCAAGGCTTTGGCCAAACTCAAGAAGATCCCAGAGACCATTAACGCCATCATGGAGCGCCTGGAGCCAGAACTCAAGCAGATCCTTAAAAGATCCACCACCCAGATCGCAGACCACGCCTACCAGAGAGGAGAGAGCCTGGCACAGGACAACCAGCCAAAGCTGCTCCTGGAACTGCTGGAGCTGCTGTTTGACAAGTTTAACGCCGTCGCCACGGCTCACAGCATCGTTCTGAACCATCTGCAGCAGATCGTCGTGTCTCCCAGTGGAGCTCAGGAGGGCATCAAGCTCTATGAGCAGGCTGACGTCTCCGCCAAGATCCAGACCGTCCTACAGGTGCTCCTGATGGACTATCTGGATGTAAAGAACACGCGCAGTGCAGCCGAACCCTCAGCCCAGCTCTCCTACGCGAGCACCGGCGGTGACTTCGGAGCCTTTTTCGCCAAGAAGAAACCACTTCGACCCAAACAGTCTCTCTTCAAATTTGAGTCGTCCTCCCACGCCATAAGCATGAGCGCGTACCTGCGAGAACAGCGGCGAGAACTTTACAGCAAGAGCGGAGAGCTACAAGGAGGAGCTGATGATAACCTGATCGAAGGAGGAGAGACCAAGTTCCTGTGTAAGCCCGGAGCCAGGAACATCACCGTCATCTTCCAGCCTTTGCTCAGGTTCATTCAGGAGATTGAGTTGAGCATGGGTCCGGGGAAGCAGTGCCAGCTCCGTACCTTCCTCACCTACTACATCAATGAGCTGTTTCTGAACCAAGTGCGCACAGAGACCAATAAAGAAATAGAAACTGTCACTAAAGTGGCTGATCCGCTCAAGATCCTGGCCAGCGCTGACACCATGAAGAACCTGGGTGTCCAGAGACCTCTTCTGCAGagCACTGTGATTGTAGAGAAGTCCATCCAGGATCTGATGAGTCTCATGCAGGACCTGAGTGCTTACTCTAACCAGTTCCTGGAGATGGTCTGTGACAAGCTGAAAGAGTACAAGGAGATCTGCAACACTGCCTACAggagtATAGTGCAGTGTGAGGAAAAGCTGATCATCAGTGCCTCTTGGGCTAAAGACGAGGACATCAGCCGCCTGCTGCAGTCACTGCCCAACTGGGCCAACATGACTCAACCCAGACAGCTGCGCCAGAAAAGAGAGGACGAGGAGGATTTTACACGagcgGCTTTTGCTAAGGAGTCTGAGGTGCTGACAGGGAACCTGGGAGACAAGCTGATTCCTCAGAACGAGATTCTTCGGGATGTCAGTGACCTGAAGGCTCTGGCAAACCTCCAAGAGAGCATGGAGTGGCTGGCTCTTTGCCtcaaaggcttcttcttctgccCGCTCCAAAGCtccagtgcATCACCAGGCTCGGACACACAGACGAGCAGTGAGAGCGCACGCAATAGGGAGCACATCATGCAGACTCTTTCAGACCTTGCCAGATCTTTCCAGGACATCGCTGACCGCTGCCTGCTTGTGCTGCACCTGGAGGTCAGGGTGCACTGCTTCCACTATCTCATCCCCCTGGCCAAGCAGGGCAACTACGCCATCGTGGCCAACGCCGCCAGCATGGACTACGACCCCCTGGTGGTCAAGCTGAATAAAGACATCAGCGCCATTGAGGAGGTAATGGGAGCCGCGCTGCAGCAGCACAAGTTCCAGTACATCTTcgaggGTCTGGGCCACCTGATCTCCTGCATTCTGATCAACGGAGCTCAGTACTTCAAGCGCATCAGCGAGTCTGGAATTAAGAAGATGTGCAGGAACATATTTGTGCTCCAGCAGAACCTCACCAACATCACCATGTCACGCGAGGCCGATCTGGACTTTGCTaggCAGTACTATGAGATGCTGTACAACACAGCAGATGAGTTGTTGAACCTGGTGGTGGATCAGGGCGTGCGTTACAGCGAGCTGGAGTACATCAACGCACTGAGCCTCCTGCACCGCAGCCAGACGGGCGTGGGAGACCTGAGCGTCCAGAACACACGCCTGCAGCGCCTCAAAGAGATCATCTGCGAGCAGGCCGCCATCAAACAGGCCACCAAGGATAAGAAGATCACCACCGTCTGAGCACGcgcacacaaaacacataccTGTAAAAACCTGTATATGTCAGTTCGCTTTTTCACTTAATGGCCAACACTagaagatgaaagaaagcattGCACACatactgttcacacacacacacacacacacaattagtttttaatgaaataatccCTCGGAGCATGTCTCACCAACCGCGGCTTCACCTCGTGGAATAAGCAGATGGAATCTGGACGCGTGACTCGAGGACACTGTCATCTCATTTTCCTGTAATATAAAATCACTGCTCTCGGTTATATggcgcctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacattccaggtTGTGTCcacaatcacacacagcagATTAGAGCACTGGAATTATTATCTGAGGCTTCATGCgatgtgttttgttctcttagGAGGAGAAAGGCATTCTTTTATTCTGCATTTCTTTGCGTTTCTTCAAAACCCTGCCGTTTATTTCAAAAGAAGGATGATTGATTGTATATCGTGTCTTTATAGCTCAGGctcagtgaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagtgagagagagagatagatagatagatctccAGCCTCCAACTGCAGCTATTAAACCTTTAATtcgcttcttttttttcacttaagtCTTACTCACTTAGTCTgtctctcgctcactcactcacacgctCACTCTcccgttcacacacacacgcacacagagagcCACaaatcattcattctttctgcCCCATGGTGTTTTTAGTTCATTAACTCGGAAGAAAAGTGCTTAacaagagagggagaaagaaagccCTGTCGATACAGAAACACGGGCACCAGGCAACGGCGCTCCCTGAAGCCAGCGCAGCGATACATCATTATGACTCGGTGTCAGGAATCAATAACGGCCTACGGGGGCTGCTGAACGTATTAACGTGGAGAAAACATCCTTAATATTCCGGCTTCATTTGAATGATCACGTGCATATGGAGAGGAAGCGACGGGGAGGTTGCAGAAATATCACAAGAGTGAAGCTCTATGGAGTGAAGCTGTTTTTCTGAGAGCTAGTTAAACCTGAAGCGTTTGACCTTAACCTCGCAGtttcaggctgttttttttttttttaaagttaatcaCCAGTCCTCAGCAGAATGCCCAGAAACTCCaaacaattttatgtttttttagaaatcatgttttatttgttctgtGGGTTTTCACTGTTCTATGGGTTGATGTTTTGCACACAGCTGTGTAAGATAATTAGTTACTGATTTCTCTTGCTTTGAATGTATTTTGCGTCCactatattcatatttcaacATACTGAAAATTGAATGAAATCTCCCTCATTTTCATTGCAATTCTGTACAATAACatcaaaatggaaataaataaaatgaactcc

Function

symbol description
exoc4 Predicted to be involved in Golgi to plasma membrane transport; chemical synaptic transmission; and exocytosis. Predicted to act upstream of or within protein transport; vesicle docking involved in exocytosis; and vesicle tethering involved in exocytosis. Predicted to be part of exocyst. Predicted to be active in growth cone membrane and synapse. Orthologous to human EXOC4 (exocyst complex component 4).

NR:

description
PREDICTED: exocyst complex component 4

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process
GO:0015031 protein transport biological_process
GO:0000145 exocyst cellular_component

KEGG:

id description
K06111 EXOC4, SEC8; exocyst complex component 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923160.2 False 1641 mRNA 0.54 10 6260088 6316303
XM_034313148.1 True 4454 mRNA 0.50 18 6166536 6316303

Neighbor

gene id symbol gene type direction distance location
lrguk lrguk coding downstream 2650 6133559 ~ 6163886 (-)
col7a1l LOC108279990,LOC108435442,LOC107676908 coding downstream 53827 6013024 ~ 6112709 (-)
trnam-cau_46 NA coding downstream 63389 6103076 ~ 6103147 (-)
LOC113532437 NA coding downstream 133343 6033029 ~ 6033193 (-)
ucn3l ucn3 coding downstream 154993 6010290 ~ 6011543 (-)
cax1 LOC108279788,LOC108444418,LOC107725610,LOC107690555,LOC107729854,LOC107584270 coding upstream 492498 6808801 ~ 6827179 (-)
smo smo,LOC107725609,LOC107729864,LOC107690544 coding upstream 512450 6828753 ~ 6842024 (-)
tspan33a tspan33,tspan33a,LOC107725621,LOC107676927 coding upstream 529595 6845898 ~ 6862027 (-)
nudt5 nudt5,LOC107658859,LOC107656337,LOC107726016,LOC107743836 coding upstream 547628 6863931 ~ 6869613 (-)
adipor2 adipor2 coding upstream 563226 6879529 ~ 6919689 (-)
G277567 NA non-coding downstream 169144 5960674 ~ 5997392 (-)
G277577 NA non-coding downstream 178192 5978950 ~ 5988344 (-)
G277500 NA non-coding downstream 385365 5778002 ~ 5781171 (-)
G277502 NA non-coding downstream 400269 5761660 ~ 5766267 (-)
G277519 NA non-coding downstream 435467 5730845 ~ 5731069 (-)
G277878 NA non-coding upstream 467356 6783659 ~ 6787471 (-)
G277881 NA non-coding upstream 474959 6791262 ~ 6791475 (-)
G278225 NA non-coding upstream 561449 6877752 ~ 6878941 (-)
G278265 NA non-coding upstream 755443 7071746 ~ 7074585 (-)
G278275 NA non-coding upstream 912702 7229005 ~ 7229440 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other downstream 161407 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other downstream 181972 5982292 ~ 5984564 (-)
tmpoa LOC108279628 other downstream 1182221 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 1427537 4734931 ~ 4738999 (-)
LOC117599578 LOC108279645 other downstream 1683971 4466061 ~ 4482565 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 1105685 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 1650516 7966819 ~ 7970571 (-)
G278634 NA other upstream 1736785 8053088 ~ 8068077 (-)
G278912 NA other upstream 1902258 8218561 ~ 8219680 (-)
G279415 NA other upstream 2891048 9207351 ~ 9208563 (-)

Expression


Co-expression Network