kin (kin)


Basic Information

Item Value
gene id kin
gene name kin
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 13851543 ~ 13858673 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923243.2
GGTACACAAGAAAGAATGacgaaaaacacacacacggttctACACAGATAGGCGGTATAAACAGTAGAGCGTGTGAATACGGgaaatcattatttaaaacGGGTTTTCGTCTATATACGGTTTGTTTTTTGGTTGGTTGAAAATGGGGAAAGCGGATTTCCTAAGTCCTAAGGCTATTAGTAATCGGATTAAAGCGAAAGGCCTGCAAAAATTGCGATGGTACTGTCAAATGTGTCAGAAACAGTGTCGAGATGAGaatggGTTTAAATGCCACTGCATGTCAGAGTCTCACCAGAGGCAGTTACTCCTGGCCTCAGAGAATCCCAGCCAGTTCATGGACTACTTTTCAGATGAGTTCAAGAGTGACTTTCTGGAGCTGCTAAGAAGACGTTTTGGAACAAAACGAGTTCACAATAATATCATCTATAATGAGTACATCAGTAATCGGGAACACGTTCACATGAACTCCACTCAGTGGGAGACTCTGACAGATTTCACTAAATGGCTGGGGAGAGAAGGTTTGTGTAAAGTGGACGAGACGCCCAAAGGCTGGTACATTCAGTACATCGATCGTGACCCGGAAACAATCCGCAGACAGGAAGagctggagaagaagaagaagcaggatCTGGACGACGAAGAGCGCAGCGCCAAGTTTATTGAAGAGCAAGTGCGACGAGGCCGAGAGGGCAAGGAgccagagGAGGAACCTGTGTTTACTGAACtgaagagggagaaggaggaagagaaagttGCCTTCAACCTGGCTGGTAGCGCCGCTCCAGCTAAAGCAAGCACATCTCTGGGTTCAAATGCCCTTAAAATAGCAGCATCCGGTAAAAGAAAAGACACGTCTCAGGGTGCCGACTCcaaggagaagagaaagaaatcgGCACTCGATGAGATCATGGAGatggaggagaagaagaagaaatctgTGAGGTCAGACAATTGGATTCGGCCAGACATAGTGGTCAAGGTCATCACCAAGAGGCTGGGAGACAAGTATTACAAGAAGAAAGCAGTCATTCGGgaggTGCAGGACAAATACACAGCTATAGTAAAGTTGATCGACTCAGGAGACAAACTCAAACTGGACCAAAGCCACCTGGAGACAGTGATCCCAGCACCGGgtAAGCGAGTTGTGATTGTGAATGGGCAGTATCGGGGCATGGAAGCCATCTTAGAAGGCATAGATGAAAAGAATTTCTCTGCTCAACTAACATTAGACTCGGGTGCTATGAAGGGGAAGAGAGTAGAGGGGATCCCATATGAAGACTTCTCCAAGCAGGcgtgatttttaattttttttttttcctcaactcTCCATCACAATCATTTTCCCTGCATCCTCTACTGTGTCAGAGCATTTatcagggacacacacacacacatcctgcagTTCTCTTTGCTGAACACATGAACTACCCCATGTACTGAAACCAACTTggaaaaaaacagccttaaacagcaagttttaattttctttgatttttaatagGTAATATCAGGATTGTCTGTAATTAAAGAGTACTTGATTGTAAGGACAGAATGTATCTGAATGGATTCGCATTGAGATTTAAACAGAGGAAGACTGGATTGCATGAACATTGTACACTGAACAATGTTAAATTGTTTCTCAATTAATCTGATGTATGTAAAGCACCACCTTTCGTTGCCGCCAATTTTTCCATGTGTTTCTTCTATACAGTTCTCttgtaaaatgcaattttaaaatacaCTTTCTTATACAATT

Function

symbol description
kin Predicted to enable double-stranded DNA binding activity. Predicted to be involved in DNA replication and cellular response to DNA damage stimulus. Predicted to be active in nucleus. Orthologous to human KIN (Kin17 DNA and RNA binding protein).

NR:

description
PREDICTED: DNA/RNA-binding protein KIN17-like isoform X1

GO: NA

KEGG:

id description
K13102 KIN; DNA/RNA-binding protein KIN17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923243.2 True 1756 mRNA 0.43 11 13851543 13858673

Neighbor

gene id symbol gene type direction distance location
LOC113531720 itih5 coding downstream 22035 13808409 ~ 13829508 (-)
LOC113532385 kcna1a,kcna1l,LOC108279524,LOC108425346,LOC105912431 coding downstream 64109 13782762 ~ 13787434 (-)
LOC117599536 itih5 coding downstream 87753 13751523 ~ 13763790 (-)
sfmbt2 sfmbt2 coding downstream 126913 13665323 ~ 13724630 (-)
prkcq prkcq,LOC107748461,LOC107555829,LOC107675981 coding downstream 203346 13621297 ~ 13648197 (-)
LOC113531970 LOC108279954 coding upstream 1015177 14873850 ~ 14885572 (-)
slc6a1l LOC108279609,LOC108427058,LOC107584717,LOC107689715,LOC107748475,LOC107597007,LOC101061665 coding upstream 1173975 15032648 ~ 15047471 (-)
LOC113531968 LOC108279915,LOC107597036 coding upstream 1200839 15059512 ~ 15078787 (-)
pyroxd1 pyroxd1,LOC108279593 coding upstream 1242683 15101356 ~ 15111265 (-)
LOC113531721 iapp coding upstream 1257554 15116227 ~ 15118561 (-)
G282283 itih2,LOC106576198 non-coding downstream 10949 13838658 ~ 13840594 (-)
G282279 itih2,LOC107555817 non-coding downstream 14112 13833248 ~ 13837431 (-)
LOC117599591 NA non-coding downstream 276168 13571800 ~ 13575375 (-)
G282116 rbm17,LOC107755150,LOC107748463 non-coding downstream 287597 13559259 ~ 13563946 (-)
G282060 NA non-coding downstream 423671 13427657 ~ 13427872 (-)
G282349 NA non-coding upstream 78983 13937656 ~ 13937879 (-)
G282368 NA non-coding upstream 95326 13953999 ~ 13969897 (-)
G282404 NA non-coding upstream 474259 14332932 ~ 14333132 (-)
G282409 NA non-coding upstream 514058 14372731 ~ 14373513 (-)
G282410 NA non-coding upstream 531150 14389823 ~ 14390557 (-)
dusp16 dusp16 other downstream 2098630 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 2191216 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 2263519 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 2592131 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 2757367 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 1281252 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 2542248 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 2979862 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 3099839 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 4120090 17978763 ~ 17988280 (-)

Expression


Co-expression Network