cmasa


Basic Information

Item Value
gene id cmasa
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12570068 ~ 12579954 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923288.2
TGAAGATTATCTTGAAGAACAAAACACTTTGTTCATACACTGAGAATCATACACTTTTGTTGGTCACAGAGCTTATTTTCTGCAATAATCCAAACGCCAATGGGAGAATCCTGTTGGCTTTTTGTCGAGAGAACCAGGGTGATGCTAACTTCCGGGTCGGCCCACAGAACTAAGTGAACCCTGCGGCGCTGTGTTTCGCGGTTGTTGTGTGTGACGTAGCGCTACGTTTCCCGTCTTGACCCTCGCGGAATTTCTATTTCAGAGGTTGCTTTGAAAACAGACGGATtcagtacatttatttattttagtattattttttatgacaTTCTTTATGCCAAAGCTGGTCCTAAAGTCCATTATTTTGAGAAATCGCTTTTTCGGTGGcgcactgcagtgtgtgagtgagagagtgagagagagggaatggcTGCCTCAGGGAAACACACAGTGGATGGACCTACAGAAGAGTGCAGCAATCACTTAAACAAGCGCATCCGGTTAGAGGAGAAGAGACAAATCGCTGCAGTGATCCTCGCCCGGGGAGGCAGTAAAGGAATCCCCCTGAAGAACATCAAGCTGCTGGCTGGAGTTCCGCTCATCGGCTGGGTGTTACGAGCGGCTGTAGAGTCCGAGGTGTTTGACAGTGTGTGGGTGTCTACGGACCATGATGAGATTGAGAGGGTGGCAAAAAACTGGGGGGCTAAGGTCCACAGAAGGAGTCCAGAAGTGTCCAAAGACACATCGACATCATTGGAAACCCTACAAGAGTTTTCCAGACTTAACCCAGAAGTGGATGTCATCTGTAACATCCAGGCCACCTCACCGTGCCTTCACCCGCACCACCTGAAACAGGCTGTGGAGATGATGACCAAGCAAGGCTATGAATCTGTCTTCTCTGTCGTCCGCCGACACCACTTCCGCTGGCAAGAGATAAAAAATGGAGAGGCCACATGCACTAGGCCTCTGAACTTGGACCCATCCAGGAGACCTCGTCGTCAAGACTGGGATGGAGAACTCTGCGAAAATGGATCCTTTTACTTTGCCACCAAAGATCTTGTAACCCAGGGACTCCTGCAGGGAGGGAAGATTGCCTACTTTGAGATGCCCCCAGAGTATAGCGTTGATATTGATGTTGACATCGACTGGCCCGTAGCAGAACAGAGGGTTCTCAGGTTTGGTTACTTTGGCAAGGATAAGCCGGAGTTGATGCGCTTGCTCTTGTGCAACTTGTCAGGCTGCCTGACTGACGGGCAGGTCTATCTGTCTCGTGTGGGAGAGGAGATGGTATCTATCAATACCAGAGACCTGACTGGCATCCGCATTCTACAGCAAGAAGGAATGGAGGCGATCCTTTTATCATCCAGTGACAACCCAGTACCAGAAGTACTTGCAGAGAAGCTGTCACAGAAAACAGGTTGTGAAGTGAGGCATCTGAAAGAGGAAAAGCAAATAGAACTGGAGAGACTGCTGAAAGAGAAGGAGCTCGTGTGGAAAGACGTGGCCTACATGGGTAATGATGTGCCAGATGTGGACTGCCTGAACCTGGCTGGTCTGAGCGCAGTGCCCTTGGACGTCCCCATGGTGGTTCTCAATGCGGCTAAATACTCGTGCCAGAGGCCAGCGGGACACGGAGCTCTTAGGGAGTTCATTGAGCACATTCTCCTGATTAAGAAGGTGGCAAAGTTTCAGAAGGAGAAGGATCACTGCTAAAGAGATACGTTTTTAATTTAAGGAAAGTTGTGAAGCATTGCACTCTCAAGCTATGTGTTAGAGTCAAATTCTTATAGAATGTGTATtatgtttgtaatgaaaaattcTGCAGTGCTCCTTGGTGTACTATGGGGTTAAAGGTCTTGTGCTGAGAAAGTAGAAGAGTGAAGATTCAGTCACAAGATCTTTCCATTATGTCAATCCTTTATACTCCAGCACACACCAGAGGGCAACCTTGCACATAACATCACATTATAGGAAGGCTTTGAAACTGTGATCATTCTTGCTTAGATATGAGCTGCTGACTACTTTGAAATATAGTGCATACTTTATCATATGGTCTAGTTAACTTTATCATCTTTACACCATGACATTCGCATTAGCAGTAAAATTCACATTACTGTACATGCCTATcctaaatgtcattttttttcatgataaCATATATTTCTCTGTACAAGCAGTCATTGATTAATCAAGTATTAAATGGAAGAATtaactgt

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: N-acylneuraminate cytidylyltransferase-like

GO:

id name namespace
GO:0006054 N-acetylneuraminate metabolic process biological_process
GO:0009103 lipopolysaccharide biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0008781 N-acylneuraminate cytidylyltransferase activity molecular_function

KEGG:

id description
K21749 CMAS; N-acylneuraminate/3-deoxy-D-glycero-D-galacto-nononate cytidylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923288.2 True 2213 mRNA 0.46 8 12570068 12579954

Neighbor

gene id symbol gene type direction distance location
shisal1a LOC108279994,LOC108442307,LOC107725687,LOC107676911,LOC107583751 coding downstream 52385 12488395 ~ 12517683 (-)
si:ch211-214j24.10 LOC108279797 coding downstream 118483 12445898 ~ 12451585 (-)
apex1 apex1,LOC107658891 coding downstream 134877 12430448 ~ 12435191 (-)
LOC113532240 NA coding downstream 154994 12411859 ~ 12415074 (-)
LOC113531803 NA coding downstream 160538 12402179 ~ 12409530 (-)
LOC113532438 NA coding upstream 969 12580923 ~ 12581063 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107729834,LOC107690420,LOC107587158 coding upstream 4883 12584837 ~ 12588680 (-)
abcc9 abcc9,LOC107725580,LOC107729856 coding upstream 12133 12592087 ~ 12636416 (-)
nuak1a nuak1,LOC107725508,LOC108439414,LOC107587153 coding upstream 207928 12787882 ~ 12803422 (-)
prl2 LOC108279639 coding upstream 229367 12809321 ~ 12819706 (-)
G281527 NA non-coding downstream 92439 12476264 ~ 12477629 (-)
G281510 LOC108279795,LOC108442313 non-coding downstream 110976 12457563 ~ 12459092 (-)
G281486 NA non-coding downstream 200803 12368959 ~ 12369265 (-)
G281455 NA non-coding downstream 315913 12251314 ~ 12254155 (-)
G281373 NA non-coding downstream 476009 12093857 ~ 12094059 (-)
LOC113532391 NA non-coding upstream 566328 13146282 ~ 13147358 (-)
G281964 NA non-coding upstream 588721 13168675 ~ 13210493 (-)
G281981 NA non-coding upstream 679198 13259152 ~ 13285718 (-)
G282006 NA non-coding upstream 740219 13320173 ~ 13373048 (-)
G282047 NA non-coding upstream 827659 13407613 ~ 13409326 (-)
dusp16 dusp16 other downstream 817155 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 909741 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 982044 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 1310656 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 1475892 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 2559971 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 3820967 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 4258581 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 4378558 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 5398809 17978763 ~ 17988280 (-)

Expression


Co-expression Network