kcnj8 (kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107729834,LOC107690420,LOC107587158)


Basic Information

Item Value
gene id kcnj8
gene name kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107729834,LOC107690420,LOC107587158
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12584837 ~ 12588680 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923289.2
tttcttaacaaattcaaaaagactggaagtgttgcagaccaaccgagccgtggacgtccatgaacatGCACTGACGTGCTGCTGGCATACGCAGTCCTGTGTGTCTGGAGAGCTTTGGGACAGCCTGTTACAGGATAAGAGAGAGCTGAAGCTGTTTGCTGTAAGGGTTTCGCGGAGTACACAGGGCAGTGACCGCCCCTGAGATGTGCGTCAGCTGGAGCTGGCCTTGGAGCAGCCTCTCTGGAGTGTGTGGCGAGCAGCAAAACTTTTTGCACGCATCCCTTGGAACGtctcaaaggaaaaaaaagctttcgGTCAGATGCAAAACGTTGCAACACATCTGCCGGGTTAAACAGCTGGGATGTAAGACGATGGCGTGTTGGAGCGCACGCGCTGGTTAGATCTGCGCGCCgtcgctgtgtgtgtggttttagtttctttttttattctgaactGAAGCACGGATATTGCCTGTTCGTGGGCGGTAACGTGCCGAATAGCGATGCTGGCGAGAAAAAGCATAATTCCCGAAGAGTTCGCGCTGCCCGCGCTGGCCTCGCGCGCCCCCCGGAAGCCGGTGTTCAGGGACCGCGTGAACAAGGCGCGCTTCATTGCCAAGAGCGGCGCGTGCAACCTGGCGCACAAGAACATCCGCGAGCAGGGCCGCTTCCTGCAGGACGTCTTCACCACGCTGGTGGACCTTAAGTGGCGCTTCACGCTTGTCATCTTCACCATGACCTTCCTGTGCAGCTGGCTGCTGTTCGCCATGGCCTGGTGGCTCGTTGCGTTCGCGCACGGAGACCTGGATCTCACCCGTCAGTCCGGGGTCGAGCAGTGCGTCACCAACGTCAAGTCCTTCACCTCAGCCTTCCTCTTCTCCATCGAAGTGCAGGTCACTATAGGCTTCGGTGGCCGCATGATCACTGAGCAGTGTCCGACAGCCATCACGGTGCTGATCCTGCAGAACATCGCTGGGCTCATCATCAATGCCGTCATGCTGGGCTGCATCTTCATGAAGACGGCGCAGTCACACAGGCGTGCTGAGACACTCATCTTCAGCCGCCAGGCTTGCATCGCCGTTCGCAACAGCCGTCTGTGCTTCATGATCCGCGTGGGTGACTTGCGCAAGAGCATGATCATCAATGCTGCTGTGCGCCTCCAGGTGGTGCGCAAGACCACCACGCCTGAGGGAGAGGTCATCCCTATACACCAGATCGACATCCAGAGTGAGAGCGCCGTGGCCAGCAACAGTATTTTCCTCCTGGCTCCACTCATCATCTGCCATGTCATTGATAAAGACAGTCCACTGTATGACCTGTCAGCCATGGAGCTGCAGTGCAGTGACCTGGAGGTGATTGTCATCCTTGAGGGTGTTGTGGAGACCACGGGCATCACCACACAGGCACGCACTTCTTATGTGACTGAGGAGATCCAGTGGGGCCACCGCTTTGTGCCTATCGTGACTGAAGAGGAAGGGGTTTACTCTGTGGACTACTCTAAGTTTGGCAACACAGTGAAGGTAGCGACGCCACGCTGCAGCGCCCGTGAGCTCGACGAGAAGCCATCCATCCTCATACAGACGATGCAGAAGAGTGAGCTGTCGCACCAGAACTCTCTGCGTAAGAGGAACTCAATGCGCCGCAACAACTCCATGCGCAAGAGCAACTCCATGCAGCGGAACAACCTGTCACTAGCTGTACCCAAAGTGCAGTTCTTCACACCTGAAGGGGGGCAGAATGTAGCTGTCACATGACACGCACAAGGCCATCGTCTGGATTATAAAAGGTTCAGGGACGCTCTATTCCTGTCTTGCTCCACTGGACCTCTTCCTGTTGTTCTGTCTAACTCTACCACTTCTGTTGTAAAGGAGCAGCAACTGCTAATCTGCTTTCATCCTTTCCTGTTTTACACAAAATCagttcaatttaaaaaatactttttaaataataacatattatttgagagtgagaaagaggaaTTCATTGTCTCTCATACTACATCACTATTTCTTTTCATTAGAGCACTATTTCACTGTTGGAACCTGTAATATTGTCACCAAGCTTGTACACACTTTATCTAAGAAatttaatgttctgtgtaaaatgagaaatattaaaacGCTCAGTAAAGCAGTTTGTCCTGCTTGTTGTGTTTTCAATTCACTATAATGTATTTTCTACTTTTAATTGCTTTGTGTTCTGATTTAGCTTGCATATTAGtgttaatattagtattaaGGCATATTAATATTAGTTAACAATTTAGAAACAATGAAAATTACACAATGTAAGGGTTTTATAACATAATagtaatgtttttcttttcttgaaataaaaaaaatattttaaactttttaaaaacaatagaCTGAAAGATTTTATTCTGCCACTTGGGGGAGCTGTTGTATCAACTTTCATGTCTTGGGGAAACCcgaatatacactatatgggcaaaagtttgtggatacctgaccatcacacccaaatgtgttaccacaaagttggacacacacagttgtataggatgtcttttcAGTGGCATAGACAGAAATTAATGTATGTTTCAGACAGAAGCAGGAACAGTACGATTACTGCTCAAAAATGTTATTCATCATGCACCTCTGAATAAGCAGCCACTTATTTTCCAATGTATTTGTTATGGAGATGTTATGGAGATATGCTGTAAATTGTTACTGTTTCAGCTTTGTTTATGATGATACTTGAAATACAGTATTGTTAGTTATGTAAGAACTCGGTGGTATCTCCATTATGATGTTAAATTTGCTCAAAGTTAGCCATGGTGatacaaaatatgatttttctaattaaaatagGATGTCATGGCCATCTTCCAACCGCAGGCAAAAGTGCCTCTAATCTGATCTTTATCCTCAAGTGTGACAGTTtgaacagcaaaaaaataaatctggtgGAGTTTGA

Function

symbol description
kcnj8 Predicted to enable ATP-activated inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Used to study hypertrichotic osteochondrodysplasia Cantu type. Orthologous to human KCNJ8 (potassium inwardly rectifying channel subfamily J member 8).

NR:

description
PREDICTED: ATP-sensitive inward rectifier potassium channel 8

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015272 ATP-activated inward rectifier potassium channel activity molecular_function

KEGG:

id description
K05001 KCNJ8, KIR6.1; potassium inwardly-rectifying channel subfamily J member 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923289.2 True 2939 mRNA 0.47 2 12584837 12588680

Neighbor

gene id symbol gene type direction distance location
LOC113532438 NA coding downstream 3774 12580923 ~ 12581063 (-)
cmasa NA coding downstream 4883 12570068 ~ 12579954 (-)
shisal1a LOC108279994,LOC108442307,LOC107725687,LOC107676911,LOC107583751 coding downstream 67154 12488395 ~ 12517683 (-)
si:ch211-214j24.10 LOC108279797 coding downstream 133252 12445898 ~ 12451585 (-)
apex1 apex1,LOC107658891 coding downstream 149646 12430448 ~ 12435191 (-)
abcc9 abcc9,LOC107725580,LOC107729856 coding upstream 3407 12592087 ~ 12636416 (-)
nuak1a nuak1,LOC107725508,LOC108439414,LOC107587153 coding upstream 199202 12787882 ~ 12803422 (-)
prl2 LOC108279639 coding upstream 220641 12809321 ~ 12819706 (-)
LOC113531778 trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107590972,LOC107710683 coding upstream 374036 12962716 ~ 13110214 (-)
tnni1d LOC108280151,LOC108427054,LOC107597014 coding upstream 600182 13188862 ~ 13198925 (-)
G281527 NA non-coding downstream 107208 12476264 ~ 12477629 (-)
G281510 LOC108279795,LOC108442313 non-coding downstream 125745 12457563 ~ 12459092 (-)
G281486 NA non-coding downstream 215572 12368959 ~ 12369265 (-)
G281455 NA non-coding downstream 330682 12251314 ~ 12254155 (-)
G281373 NA non-coding downstream 490778 12093857 ~ 12094059 (-)
LOC113532391 NA non-coding upstream 557602 13146282 ~ 13147358 (-)
G281964 NA non-coding upstream 579995 13168675 ~ 13210493 (-)
G281981 NA non-coding upstream 670472 13259152 ~ 13285718 (-)
G282006 NA non-coding upstream 731493 13320173 ~ 13373048 (-)
G282047 NA non-coding upstream 818933 13407613 ~ 13409326 (-)
dusp16 dusp16 other downstream 831924 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 924510 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 996813 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 1325425 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 1490661 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 2551245 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 3812241 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 4249855 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 4369832 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 5390083 17978763 ~ 17988280 (-)

Expression


Co-expression Network