ccdc59 (ccdc59)


Basic Information

Item Value
gene id ccdc59
gene name ccdc59
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9895085 ~ 9897952 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923293.2
TTACGTCATAACTATGCGACACAGTCATCTTGCAGCATGGCTAGAGTTGTGTTTCTCCGTTGATATTCAGAGATTTGTACTGTTTTGAAATGGCACCTGTAAATCCACATTTTAAAGGCAAACCTTCATTTAAAGGTAGAAACACGAAAAGGAATTATGCAGATAGTCATCCATCAGCTgttaataaaaagaagaaaacatggaATCCAGAGAACAAGTTTTTCCAGGGCAGTTTACAGGAAGGTAAGGGCTTTGCCTTCCAGAGGAAGCAAAAAGTACAACAAGAATACAAGAAACTTCTACGAAAGGAGAAATGGAGAATGAAGGATTCCAAGCCAAAGCTAGAAGAGGAATACCCCGAACATCTGAGGCACCTCTACATGGCCGAACAGCAGAGACTGGACAAAGAAGAGCAACTGAACAGGGATCGCAGGAGGAAAGGAAGAAGCGCTGATGCAGGAGAAGAAGATGACTCTGTCCTTTCTAGCTCTGTCATAAGGACTTCTGAGACAGGAAGCCCTGAGAAATCAGCTGCCTCATTGAATGAAGCACCACAGACATCACAGATTGAAAGGAGTTCTGATCAGGAccaaaggaaaaagaaatggaagaaaatgtcTTCCAACCAGAAGATGATGGAGGagtataaaaggaaaaaagaggagCGAGAACGGAAAAGAGAGGAATACTTGAAAGACAAAGCACAGAGAGAGGAGGCTCTGAAGAGGtacaaggaaaagaaaatggccACATATCAGTTGCTGAAGAAGAAGACCAAAAAGGGTCAACCCAACCTGAATTTGCAGATGGAGCTGCTGCTTCAGAAAATCCAGGCTCAGCGAAAATAACCAGCATGCCTGCAACCGGATGTTTAAAGTCCTAAAGTGTGATTTATGAATCTTGCAAACAGTGAGAGAGGCGTGGAAATGTGTTTATGCTACACAGAAACTGCAGCAGACTAATATATACGTCTCCATGACTCATGTCTGTGATGGATATGAGTCAGCAAAtggtgctgtgctgtgtgtttatgaacTGGTTAATGCAGTTGGGATAAAATGTGgatttgtgtgattttaaaaattttacagACACCTATTCTTTTTaagtttattataatttaatgatCTCAGATTTAATGAGACCAAACTCTAATGTAAATGGAGGCTGTTTGTGCCCTACTTATCTTTTTGGAAATAAAACTACACTTCATACA

Function

symbol description
ccdc59 Orthologous to human CCDC59 (coiled-coil domain containing 59).

NR:

description
PREDICTED: thyroid transcription factor 1-associated protein 26 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923293.2 True 1216 mRNA 0.41 4 9895085 9897952

Neighbor

gene id symbol gene type direction distance location
tspan11 tspan11,LOC108279944,LOC107720401,LOC107593980,LOC107560736,LOC107694254,LOC108436010,LOC107690651 coding downstream 40756 9755585 ~ 9854329 (-)
sema3aa LOC108280003,LOC108436009,LOC103023715,LOC107562295,LOC107757236,LOC107560735,LOC107694310 coding downstream 152407 9707450 ~ 9742678 (-)
pcloa pclo,pcloa coding downstream 196889 9629331 ~ 9698196 (-)
ankrd16 ankrd16 coding downstream 271490 9617408 ~ 9623595 (-)
trnay-gua_2 NA coding downstream 272466 9622533 ~ 9622619 (-)
pik3cg pik3cg,LOC107656384,LOC107590535,LOC107658948,LOC107583938,LOC107705338 coding upstream 109246 10007198 ~ 10015790 (-)
lmod2b lmod2,lmod2b,LOC108411152,LOC101068860,LOC103382826 coding upstream 549713 10447665 ~ 10450902 (-)
asb15b LOC108280075 coding upstream 553626 10451578 ~ 10461046 (-)
ptprz1b LOC108280061,LOC108435099 coding upstream 572584 10470536 ~ 10512149 (-)
slc13a4 slc13a4,LOC107656439 coding upstream 634829 10532781 ~ 10548341 (-)
G279832 NA non-coding downstream 90682 9804178 ~ 9804403 (-)
G279730 NA non-coding downstream 265932 9627337 ~ 9629153 (-)
G279728 NA non-coding downstream 269966 9624599 ~ 9625119 (-)
G279641 NA non-coding downstream 361664 9533222 ~ 9533421 (-)
G279625 NA non-coding downstream 375007 9519833 ~ 9520078 (-)
G279967 NA non-coding upstream 49379 9947331 ~ 9947536 (-)
G280002 NA non-coding upstream 106389 10004341 ~ 10004812 (-)
G280228 NA non-coding upstream 180134 10078086 ~ 10078356 (-)
G280233 NA non-coding upstream 189897 10087849 ~ 10088120 (-)
G280384 NA non-coding upstream 520966 10418918 ~ 10513153 (-)
cracr2ab LOC108280118 other downstream 2699 9878481 ~ 9892386 (-)
G279415 NA other downstream 686522 9207351 ~ 9208563 (-)
G278912 NA other downstream 1675405 8218561 ~ 8219680 (-)
G278634 NA other downstream 1827008 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 1924514 7966819 ~ 7970571 (-)
LOC113532274 NA other upstream 358020 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 1097153 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 1181216 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 1340983 11238935 ~ 11259412 (-)
G281074 rad51ap1 other upstream 1688352 11586304 ~ 11588024 (-)

Expression


Co-expression Network