LOC113532119 (LOC108279527,LOC105916192,LOC105029310,LOC108425345,LOC107729772,LOC107666172)


Basic Information

Item Value
gene id LOC113532119
gene name LOC108279527,LOC105916192,LOC105029310,LOC108425345,LOC107729772,LOC107666172
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 16769270 ~ 16771695 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923299.2
GTTCCCTCTCTCGGTGACACTGTGAGGATTCCCTCACCGCGCTGAACGATGAGCGCTGTTTTCACGTCAGGAATCATCCTCGTTATTTTGTCATCCGGGTCTTCAGCTCGCCTCTCGCGGCTTTATTTACTTTCCAGTTACCACAGAGCTCGCGCTGGCGCTCCGTGCGCGCGCTCATTATCTGTCACGTTAAAACAGcgtgaacatttttaaaacttcagTGCGAAATCCAGTTGAGAAAACTGTTACTAATAAGTGAAACTGATCGAAATCTAcaggtcttttttttatgttttcctgGTGAACATTTCATGGCTCCGGAATGGAGATAGCCTTGGTGAGTTTGGAGAACGGCGGCGCGAGAGGGAGCGCGAGCGATGCCAGAGAAGGCTGCCGTAGCGCGCGGGACGAGTGTGTGAAGGAGCTGAACACGGAACCGAGCTCGTGGAGAATGAACGACGTGAGCGACACGTTCAGCTGCGCGGAAAGCGCCGTGGATGCGCTGCTGCGCGCCGACCGCGTCCCTCACCTCTTTGACGAGGACCTGTCGGACGTGGTGGACGTGATGGACAACTTGGAGCATGACGGGAGCAATGAGCGCGTGCTCATTAACATCGCAGGTCTGAGGTACGAGACACAGCTGGGCACCCTAAACCAGTTCCCTGACACCTTGCTGGGAGACCCAGACAAGAGGATCAAGTACTTTGACCCACTTCGGAATGAGTACTTCTTTGACCGAAACCGGCCGAGCTTTGATGGGATCCTGTACTTCTACCAGTCAGGTGGGAAAATCCGGAGGCCCGTCAACGTGTCCATCGATGTATTCGCTGATGAAATACGGTTCTACCAGCTGGGTGAAGAGGCTATGGAGCGCTTTCGAGAAGATGAGGGCTTCATCAAGGAAGAAGAGAAACCCCTACCACACAATGAGTTTCAGAAACAGGTGTGGCTCATTTTTGAGTACCCCGAAAGCTCGAGTCCTGCCCGTGGCATCGCCATTGTATCTGTGATCGTCATCACCATATCCATCATCACTTTCTGCCTAGAGACGTTGCCTGAGTTCAGGGATGAGAGGGAGCTTCAAGGAGCGAGCAGGACAGCTGCCAATTCCACTTTACAAGCTCGCCCATCGCTCACATTCTCCGACCCATTTTTTGTCGTTGAGACCACCTGTGTGATTTGGTTCACCTTTGAGCTTATTGTCAGGTTCTTTGCCTGCCCCAGCAAGTCAGAGTTCTCCAAAACTGTCATGAACATCATCGACATCATGTCCATCATGCCTTACTTCATCACAGTAGGGACAGAGCTGGTGGAGCAGCAGCACGGTCAGGATCATGACAACGGACCGCAGCAACAGCAGGCCATGTCACTGGCCATCTTGAGGGTTATTAGACTAGTGAGGGTGTTCCGCATCTTCAAGCTCTCAAGGCACTCCAAAGGTCTCCAGATCTTGGGGCAGACTCTGAAGGCCAGCATGCGAGAGCTAGGCCTGCTCATCTTCTTCCTTTTTATCGGTGTAATCCTTTTCTCAAGCGCTGTGTACTTTGCTGAGGCTGACGAGCCTGAGTCCCATTTCTCCAGCATCCCAGATGCCTTCTGGTGGGCTGTGGTTACAATGACCACCGTGGGCTATGGTGACATGAGGCCTGTAACAGTTGGAGGCAAAATTGTAGGCTCACTATGCGCCATTGCTGGTGTGTTGACCATTGCACTGCCCGTGCCTGTGATCGTATCCAACTTCAACTATTTCTACCACCGAGAGACCGACCAGGAGCAAGCTGCACTCAAGGATGAGCCCTCCAGTGATGTCCACGGATGCAGCAGGTCGCCTCCGAATTCCCCAGGAGATGTAGAAAGTCAGGACACACCGGTGGGAAAGGCCAACATTAAAGCAAACAGCAGCACAGACATTAAAGATTCCCTCTATGCGTTTTGCTTAGACACAAGGGAAACAGACTTGTAGTGTTAGTTTGCATTATGAACGTCAGTCACCAACATTGTAAGGTGTGTTGATACCTTTAAATTtagttttatcagtaattatTGGTCAAAAAAGACTAAGATGCTCTAAGTCTTATAGACTGGTATGAGTCTTTGCACACCCGAAATGATCAACATGTCGCCGCAGTGCTTgaaggtttaatttttttttttatttgacccCTAACAGAGCTACTTGTTTCTATAAATCCAAGCTGGacacaattaatactttaaGAATTAACACTTTAGGTGTCGGTTCAACGCAACCCAAATTGAAGAAAatttcttttctgaaatgtaCTGTGTTAAATGTGCCGTGTCAGGCTCGTGGTTGCTGATATGGTTGTTTCAATTGCAACAGAAATCATGGAGCTTCAGTATTCTGGATTGTTTCATGCATGGAAGCACATAAatcatttgaataaattatAGAGACCTCCAAA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04878 KCNA5, KV1.5; potassium voltage-gated channel Shaker-related subfamily A member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923299.2 True 2426 mRNA 0.49 1 16769270 16771695

Neighbor

gene id symbol gene type direction distance location
LOC113531734 akr1d1,LOC108425343,LOC107094558 coding downstream 69814 16688373 ~ 16699456 (-)
kdm5a kdm5a coding downstream 83868 16663927 ~ 16685402 (-)
LOC113532402 LOC108279763,LOC108425342 coding downstream 106908 16649072 ~ 16662362 (-)
LOC113531895 usp15 coding downstream 121588 16622103 ~ 16647682 (-)
il17rel il17rel coding downstream 187834 16568695 ~ 16581436 (-)
kcna1b kcna1a,kcna1l,LOC108279524,LOC108425346,LOC105912431 coding upstream 44065 16815760 ~ 16817420 (-)
kiaa0930 kiaa0930,zgc:172139 coding upstream 291073 17062768 ~ 17099329 (-)
trnar-ccg_5 NA coding upstream 331870 17103565 ~ 17103637 (-)
LOC113532299 LOC108280013,LOC108425352,LOC108280014,LOC104927640,LOC103363517 coding upstream 347651 17119346 ~ 17193239 (-)
LOC113531742 LOC108280014,LOC108425356,LOC108425352,LOC108280013,LOC103363517 coding upstream 489995 17261690 ~ 17316582 (-)
LOC117599589 NA non-coding downstream 149552 16618712 ~ 16619718 (-)
G283546 NA non-coding downstream 319504 16448439 ~ 16449766 (-)
LOC113532372 NA non-coding downstream 473080 16294880 ~ 16296190 (-)
G283503 NA non-coding downstream 529369 16239515 ~ 16239901 (-)
LOC117599449 NA non-coding downstream 687149 16078768 ~ 16082121 (-)
G284003 NA non-coding upstream 269932 17041627 ~ 17043280 (-)
G284131 NA non-coding upstream 735181 17506876 ~ 17507145 (-)
G284134 NA non-coding upstream 741915 17513610 ~ 17515240 (-)
G284135 NA non-coding upstream 749731 17521426 ~ 17523643 (-)
G284146 pacsin2,LOC108279716,LOC103038884,LOC107725788 non-coding upstream 776637 17548332 ~ 17553258 (-)
alg12 alg12 other downstream 362407 16400921 ~ 16406863 (-)
LOC113531972 muc19,LOC108280038 other downstream 1585195 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 5016357 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 5108943 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 5181246 11586304 ~ 11588024 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 66840 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 186817 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 1207068 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 1256039 18027734 ~ 18067585 (-)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 other upstream 1296903 18068598 ~ 18082361 (-)

Expression


Co-expression Network