asb13a.1 (LOC108279822,LOC108436003)


Basic Information

Item Value
gene id asb13a.1
gene name LOC108279822,LOC108436003
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9594458 ~ 9600035 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923304.2
cgagttcttctgcACCAAACGtagcacaccatgtcttcatggacctcactttgtttGTTCAGGTAACAGTACTGAGTGAATatgaactaaaatgtacattagcCTATAATGGATGACTCCTGGAAAAGCATGTTTCAAGCATATGTAAATTAATTGGATTCatgcattaatgcaaaaataagattttttaagtattttgattatatttcaagggaAAGTGTAATTATTGTGGGACAAACGAAAGTGCTGTTTTTGTAGGTTATATTAAGGTTTTAAGTTTGTGAAGGGCACTTTACCTGCGTTTAAGAggtcttttattttacatatatatttgtaaatgtgatATCAGTGGAATCACAATCATGGAATGACCCCTGAAAATTCATATTTTAGGAACTCTCAACCATCCACTAAACCCTTAAGAGATCTTTCTTCCTGTAAGtgtcttcattttaaactgtaAAGCAAATACAGGaaactgtatttaatatttatactttGAGTTGTAGCAGACTTTTATTATGAAGTAAGAAAAAAGGTTAAGTAATATCTCAAATAAAGAAACTACAACTCCCATGATTCCTAGCAAGACTGACCTGAATCGTAATCTCCAGTTTCACATTATTTCTttgtctaaaaataaatgtttggtcataaacacagctgtgtgtgtgtggagtaaaaTGAAGGAAGGGTTTTGAGTGTTGATGCTAGCTGAAGTTGGGACATGATGGGACTAAACCATTCAGCGGGGGTGATGGACTGTACCATTGTAAATGACAGTGTTGCCCCTTATAATACACTGACATAAACATGGATCCACCTGCAGGGAGGACGTGTTTTGGGGAAATCGGCTTCTGGTCTGAGCGGACACCAATGCATGAGGCAGCGTCTTTAGGACAAGTTGAGAAGCTCCGGCTTCTGGTTGAAAGTGGTGCTTCAGTAAATGCAGTGACAGTAGACAACATGACCCCGCTCCATGATGCCTGCATACAGGATCACCCAGAGTGCGTTCGAGTGCTTCTGAACGCTGGCGCACAGGTGGATGTACGGACCATTCATGGTAGCACCCCTCTGTGCCATGCGTGTGCAGCAGGCAGTGTGGAGAGTGCGAGACTGCTTCTGGAGCATGGAGCTTCAGTGAATCCCTCCCTCACGGCCCTCACTGCCTCCCCACTGCATGAGGCCTGCATACAAGGTAATCCAGAATGTGTGAAGTTGGTTATATCAAAAGGAGCCTTGTTGGAGGCTTTTGACATTTACTTTGGGACGCCGCTGCACGCCGCATGCGCTAAAGCACATCTGGAGTGCGCCTTACAGCTGCTCAATGCAGgTGCCTGCGTGAATGCTACAAAGTTCCATGAGACGGCTCTGCACCACGCAGCGAGAGTGGGTCGGACGGACCTGATTGAGCTACTGGTGGACTTTGGTGGAGACATTAATGTCAGGGACAACATGGGACGCAAACCAATAGATTACACAACCCCTGGATCCCTATCTCACATCTGTCTACAGCGCTATGAGAgTTGTCCTCTGTCTCTACAGCAGCTGAGTCGTATCACACTGAGGCGTGTCCTGGGCACCAGAGCGCTGCAGGTCATCACCAAACTAGACATCTCACAACGCATCATCAGTTACCTCAGTTACAAATAACACAGCAAAACAAGTTTATTGTGTTACTGTGAAAATGGTAATCATGAGGATGAACTCGGTTAGGAGGCTCAGGGGAAAAAACGCTCGtctaaacattttaatgctgTCACCAGCTGCTGATTGTTCTAAAATATGCTGCAAGAAATATTTTCCATGATCTTATGGTGCATTAATCAAACTGTTTGATATAATGTGCAAACATTTGATTTAATGTGCAGAGGACACTTAATACAAGTTCAGCTTTATGTTTGTTTCTTGAGAAATAAGCCAGAAATAGGTCCTGTGTCTCCTGTAATGGATAAATAATTAGTATATAAACTCTGTGGTTAATATATACATTGTGATGTTATAAAAACTAAGTGCTGGATTCAGAAAGTTGTAggatttttggatttgtttaccCCAAAAATGTGGAACCTTCACTTACAACCTTTGCTTTGTCTTTACCTCTCTCTACTTTTTAAGACAGTATGTTAGAATAtttagagtgaaaaaaaaaatctgtttccaAATGTCGTATAAATGTGGACTTCAGCTCGCAGCTTATTTATCTTGCC

Function

NR:

description
ankyrin repeat and SOCS box protein 13-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923304.2 True 2210 mRNA 0.41 6 9594458 9600035

Neighbor

gene id symbol gene type direction distance location
asb13a.2 asb13a.2,LOC108280001,LOC108436004,LOC103022068,LOC107754063,LOC107560715,LOC107655562 coding downstream 1192 9559911 ~ 9593266 (-)
mkln1 mkln1,LOC107754054,LOC107655615,LOC107560731,LOC107757245,LOC107587826 coding downstream 171190 9392029 ~ 9423268 (-)
LOC113531956 LOC108279597,LOC108279598 coding downstream 235408 9350878 ~ 9359050 (-)
LOC113532331 LOC108279597,LOC108279598,LOC105020203,LOC105912087 coding downstream 247412 9338768 ~ 9347046 (-)
parietopsin LOC108279599 coding downstream 303049 9289095 ~ 9291409 (-)
gdi2 gdi2,LOC108279819,LOC108436005,LOC107754057,LOC107560733,LOC107694307 coding upstream 542 9600577 ~ 9615300 (-)
ankrd16 ankrd16 coding upstream 17373 9617408 ~ 9623595 (-)
trnay-gua_2 NA coding upstream 22498 9622533 ~ 9622619 (-)
pcloa pclo,pcloa coding upstream 29296 9629331 ~ 9698196 (-)
sema3aa LOC108280003,LOC108436009,LOC103023715,LOC107562295,LOC107757236,LOC107560735,LOC107694310 coding upstream 107415 9707450 ~ 9742678 (-)
G279641 NA non-coding downstream 61037 9533222 ~ 9533421 (-)
G279625 NA non-coding downstream 74380 9519833 ~ 9520078 (-)
G279624 net1 non-coding downstream 74731 9517986 ~ 9519727 (-)
G279621 NA non-coding downstream 108689 9485067 ~ 9485769 (-)
G279620 NA non-coding downstream 109510 9484093 ~ 9484948 (-)
G279728 NA non-coding upstream 24564 9624599 ~ 9625119 (-)
G279730 NA non-coding upstream 27302 9627337 ~ 9629153 (-)
G279832 NA non-coding upstream 204143 9804178 ~ 9804403 (-)
G279967 NA non-coding upstream 347296 9947331 ~ 9947536 (-)
G280002 NA non-coding upstream 404306 10004341 ~ 10004812 (-)
G279415 NA other downstream 385895 9207351 ~ 9208563 (-)
G278912 NA other downstream 1374778 8218561 ~ 8219680 (-)
G278634 NA other downstream 1526381 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 1623887 7966819 ~ 7970571 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 2094379 7421988 ~ 7500079 (-)
cracr2ab LOC108280118 other upstream 278446 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 655937 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 1395070 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 1479133 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 1638900 11238935 ~ 11259412 (-)

Expression


Co-expression Network