ttll12 (ttll12,LOC107581273)


Basic Information

Item Value
gene id ttll12
gene name ttll12,LOC107581273
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 7539924 ~ 7560116 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923324.2
taaaataaatgaataaaaaagttttgGTCCTGTTCCTTTAACCGACGCTCCCATAATTCATTGCGGCACAGCGCTGTGCACGTGTGTTTTGGGCAGGAGTCTGAAAGCTGTCAGAAAACGGAGGTGAAAATGGAAAACGGGAGTGTGAATGAAGAAGAAGTTGAGGAGTATAAACTGTTTCTGGGTCTGCACAGTGCTGCTCTGAAGGCGGCTCGGATTCCGCCGCTGTACTGGAAAAGTCTGTATTATAAACTGAAACATGaggtGTTTGATGCCGGAGAGGTGTTTGGCATCATGCGCGTGGAACAGGAAGatgaggaaagagaggaagatgTACGAAAAACGTCCAACCCTGGTCATGAAGATTCTTATAAAGTGATTGTAACTCGAGAGAGTGGCCTGAAAGCTTCTGATCCGACCAGTGTATACCTGGTGGATCACGCCTGGACGTATCGGGTGGAAAGTGCCAGGCAGCAGCTGATAGAGGTTCCTGGACTATTGATCCGAATGGCCGATCTGATGGGTCTTCCTTTCCATGGTGAAGCCCCTGATCCTGACATCGTGGACCTGGTGCTGGAAAACATGTGGAAGTTTAATCAGACCTATCAGCTGTCTCAGGGGtctGCAGAGGAGAAGGTGCCCGTCTGGTACATAATGGATGAGTTTGGCTCCCATGTGCAGCACTCGTCTCAGCCGTCCTGCTGTATGGCTCCTCTGTTCTACGCTCCTCAACAGATCGCATATTCTGTGCTCTGGCCTCTGCAGGATCTGGAGAATGGAGATGAGGTGACGAGGGATTACTGTTACGGGGAGCCAGATTCACTGGTGAGGAAGTGTCGACTGTTACCATGGTTACCCGCTGACCTGGAAGGAGTGAGCAATGAGACTGTAGAGCCTGCTGACATTTATTATGAGACCATTTTACAGGAGAACAAAGAGAAGCTCCCAGTAGAAGTTGAAGCCTACAGTGTGCCTGATGGGAAAGTACTAAAggtCTACACAGAGATGAAGCAAGTTTTGGACCATCTGAAACATCCACAATTCCAATTCACCGAACAAGAAGATGAAGCCGACATACTCTGGGTGTATTCTCACATCCGTCATTATAAGAAGCTGAGTGAGGAGCGACCTCACGTCCTGCTGAACCAGTTCCCCTGTGAGACAGTATTAACCACAAAGGACTGTCTGGCATCAGTGGCGAGAGCCAGGCGAGGAGGACATTCACCGCCGTGGCTTCCCACGACCTTTAATCTTCAGACAGAGCTTCCACAGTTTATCAAACATTACCTACAGAGGCAGGAGAGAGGAGAAGATAATCACTGGATCTGTAAGCCCTGGAACCTGGCCAGAGGTTTGGATACACACATCACGAACAACCTCGACTACATCattcgacagagagagagcacccCAAAGGTGGTGTGTAAGTACCTGGAGGACCCCGTGTTGTTTGACCGAGAGGAGGTTGGTCTGGTGAAGTTCGACATCCGTTATATGGTGCTGCTGCGCTCAGTGCAGCCTCTGAGACTCTACGCTTACAACATCTTCTGGCTCCGTTTCGCCAACAGGCCGTTCTCTCTGGATCATTTTGATGATTATCAAAAGCACTACACGGTGATGAACTATGCTGAAGGTGTTCAGCTGAAACAGGTTCACTATGACGAGTTCATTCCTATGTTTGAAAAGCAGTATGCAGAATATCCATGGAAAGAGGTGGAGAGGGATATCTTCAAGGCATTTGCAGAGCTCTTTCAGGCTGCGTCATCCCGCCCTGCACCATATGGCATCTGCGCGTATCCGTCCTCCAGAGCGATATACGCCATCGACCTGATGCTGAAATGGGAACAAGCAGAAGGAGGAAATCGAGTAATGCAGCCTCAGATTCTGGAGGTGAATTTTAATCCGGACTGCAACAGGGCCTGCCTGTACCACCCCAGCTTCTATAACCACATGTTCCAGACGCTGTTCCTGGATCAGGCTGATCAGTGTCCTGTCACCCAGATCGTGTAACTCCCCTAGCTTTCAGCATATGCTGGACTTTGTTGCTCTTAAGTGAAATAAAGGTGATGTGATGCTTCAGAA

Function

symbol description
ttll12 Predicted to enable ATP binding activity. Predicted to act upstream of or within cellular protein modification process. Orthologous to human TTLL12 (tubulin tyrosine ligase like 12).

NR:

description
tubulin--tyrosine ligase-like protein 12 isoform X1

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process

KEGG:

id description
K16609 TTLL12; tubulin--tyrosine ligase-like protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923324.2 True 2082 mRNA 0.49 15 7539924 7560116

Neighbor

gene id symbol gene type direction distance location
LOC113531701 NA coding downstream 11981 7510088 ~ 7527943 (-)
optn optn coding downstream 136417 7391215 ~ 7403507 (-)
ninj2 ninj2,LOC108279754,LOC108428107,LOC103036097,LOC107581271,LOC107743858,LOC107656339,LOC107725989 coding downstream 249533 7248866 ~ 7290391 (-)
erc1b LOC108279753,LOC108442871 coding downstream 295454 7043417 ~ 7244470 (-)
wnt5b wnt5b,LOC108279752,LOC107656325,LOC107726030,LOC107572035,LOC107658849 coding downstream 504896 6926768 ~ 7035028 (-)
pnpla3 LOC108279447,LOC108428138 coding upstream 33 7560149 ~ 7592040 (-)
trnal-aag_11 NA coding upstream 33611 7593727 ~ 7593808 (-)
mpped1 mpped1,LOC107726058,LOC107658834,LOC107592234,LOC107656320 coding upstream 83331 7643447 ~ 7690136 (-)
scube1 scube1,LOC107592233,LOC107726032 coding upstream 140916 7701032 ~ 7786479 (-)
c18h12orf45 c19h12orf45 coding upstream 266173 7826289 ~ 7830138 (-)
LOC117599592 NA non-coding downstream 5642 7530784 ~ 7534282 (-)
G278312 NA non-coding downstream 43661 7495572 ~ 7496263 (-)
LOC117599447 NA non-coding downstream 123853 7414348 ~ 7416071 (-)
G278275 NA non-coding downstream 310484 7229005 ~ 7229440 (-)
G278265 NA non-coding downstream 465339 7071746 ~ 7074585 (-)
G278520 NA non-coding upstream 236719 7796835 ~ 7879017 (-)
G278911 NA non-coding upstream 656897 8217013 ~ 8217293 (-)
G278920 NA non-coding upstream 678858 8238974 ~ 8239676 (-)
G278963 NA non-coding upstream 829382 8389498 ~ 8390559 (-)
G279064 NA non-coding upstream 1052002 8612118 ~ 8612342 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 39845 7421988 ~ 7500079 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other downstream 1534795 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other downstream 1555360 5982292 ~ 5984564 (-)
tmpoa LOC108279628 other downstream 2555609 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 2800925 4734931 ~ 4738999 (-)
avpr1ab LOC108279517 other upstream 406703 7966819 ~ 7970571 (-)
G278634 NA other upstream 492972 8053088 ~ 8068077 (-)
G278912 NA other upstream 658445 8218561 ~ 8219680 (-)
G279415 NA other upstream 1647235 9207351 ~ 9208563 (-)
cracr2ab LOC108280118 other upstream 2318365 9878481 ~ 9892386 (-)

Expression


Co-expression Network