rab21 (rab21,zgc:154045,LOC106609839,LOC107690748)


Basic Information

Item Value
gene id rab21
gene name rab21,zgc:154045,LOC106609839,LOC107690748
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10913634 ~ 10928416 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923328.2
ACTCACAGAGGCGGaaatattcttttcttttttttttttttttttttttttttaaactcagtaGGGGAATTTAACCCCGTCGTTTCCCCCTGACCATTTCATATGACACGAATGTAGCTATCTAATGTAAGGCAGCAGGAGACGAGCTCTCGGTTTACTTTTCTTTGCTGAAGTTGAAGAAGGAGACCTCTCCACCATGGCGGCTGGCGGCAGTACTGCTCACAGAACATACTCCTTCAAGGTGGTGTTGTTAGGGGAAGGCTGCGTGGGCAAGACGTCTCTGGTTCTCCGTTATTGCGAAAACAAGTTCAACGACAAACACATCACGACCCTCCAGgcaTCGTTCCTTACAAAGAAACTCAACATCACAGGCAAGAGAGTCAATCTGGCTATTTGGGACACGGCTGGGCAGGAACGGTTCCACGCTCTCGGGCCAATCTACTACAGAGACTCCAACGGAGCCATTTTAGTCTACGACATCACCGatgaagactccttccagaagGTGAAAAACTGGGTGAAAGAATTAAGGAAAATGTTGGGGAAcgaaatatgtttatgtatagTAGGTAATAAAATTGATctggaaaaagagagacatgTTTCAGTGGAAGAGGCGGAGGCGTATGCAGAGTCAGTTGGGGCAAAACACTATCACACGTCAGCTAAATTAAACAAAGGAATTGAAGAACTGTTCCTCGACTTATGTAAAAGAATGATGGAGACTGCACAGGTGGAGGAGAGATCTAAGGGGAACGGGACAAGCCACGCAAGCACAGGACGAAGAGGCGTTCAGATCATCGACGATGAACCACAAGCCGCTGCTGCAGCCGGAGGGTGCTGTTCAACAGGCTAGGacaccattctctctctctctctctctctctctctctctctctctccaaaatTACTGGTACTCTTCATCTATCACTTGTTCTCTGCTCTGTAACACTGATGGCTGAAGCAGTGATTTGTTTTCCTGTTGACTACAAAGTTGGAATACAGCATCTAATGGATCTTATCAGTTACTTGTTAACTGTGGTAACCCGATCACTCTctcaggctctctctctctctctctctctctctctctctctctctctctctctctctctctcgcacacacatacacatgcgcTCTTTCTGAATATTTGAACACGCACTAAGATCTGATtttccaagctttttttttgttgttgttgtacatGTTGGGTTGATTTCCATGAAAGCATTTTCTTTTAGTTAGAAGCTTTAAGGAAGTAAAGTACCCATTATTTAATAACTTAAACATGCACACTGAACTGTACTTGTGGTAATTAGTGagcttctgtctttctgtccccAACTTCACCTCCTGAATTCATCGCTAATCAGTTTTATTAAACTTGCTCTCTAGTTGTTTTTGGACTTGTAtgtacaacaaaacaaaatacacatgtatcatattaatattttatgcgCTTTTACAACTTTTTTGGGAACTCATACATCTAGCCACTTGCAAAAATATTCAGTCTTTCATTGCATCCAAGCAATGGTTAAACTGCAGAAAAGGAGGACAAAGAAGGATCATAATAAagtagcaaagaaaaaaagctacACTGAAATGTGTGGATTGTGTAAGTATTCAAGGCTTCATTAGGGGTACAAGGCATTTTGCCCACACTACTATGTTTCAGGATTGATTTAAAGTCAAGATTGTTTTCTATGAaagcagcatttaaaaaaatgtgaatttgtgATTGTTGACCTTTACTAGTTAATGACCTtctttaacttttttctttaattgccAAGACTTCTCGAGTGGTATGGTCTAAATTCCATAACCTGGCTATTAAGCCAAGACTAAAACCATTCtaattttgtattatatttctttttttctgaattagTGCCATTTGCAACAGTTATCCTGAACTTACTGAAAGTTTTCCAGAGCCACAGAGCACTTAGTTCCTCCTGTAGGTGTAATGATACTGAAATGTGAGTCTTCcctaaaaattaatttaagttAAAAGGAGAAAAGGTGAGGGGTTGTTATGCCTTTGGAACTGTCAGAAATACAGAATGTGTTTAACTTAGCATGAGACTGTTGTATTTGTTGACagaattttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaaatacagcatttgaatgatttttggAGGTCTGAATATTTTTCCAAGTGGCTATTGGCATAGTGTATAATAGTTAAATGATTGTAAAATGAAGAATAACAATTATGGGTGAAAGCACACTTTtggaacattattttttattatttaactgcTTCTGTCATTGTTTTGTAATAgaacaattataaaaaaaaaaaaatcagtc

Function

symbol description
rab21 Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport. Predicted to act upstream of or within Rab protein signal transduction and protein transport. Predicted to be located in several cellular components, including bounding membrane of organelle; cleavage furrow; and endoplasmic reticulum membrane. Predicted to be active in early endosome. Orthologous to human RAB21 (RAB21, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-21

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07890 RAB21; Ras-related protein Rab-21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923328.2 True 2383 mRNA 0.39 7 10913634 10928416

Neighbor

gene id symbol gene type direction distance location
ptprr ptprr coding downstream 28198 10830886 ~ 10885436 (-)
ptprb ptprb,LOC107562139 coding downstream 85249 10784328 ~ 10828385 (-)
LOC113532144 best3 coding downstream 283871 10618918 ~ 10629763 (-)
slc13a4 slc13a4,LOC107656439 coding downstream 365293 10532781 ~ 10548341 (-)
ptprz1b LOC108280061,LOC108435099 coding downstream 401485 10470536 ~ 10512149 (-)
tmem19 tmem19,LOC102798963,LOC106594838 coding upstream 2931 10931347 ~ 10940102 (-)
LOC113532419 lgr5 coding upstream 12702 10941118 ~ 10974696 (-)
msgn1 msgn1 coding upstream 79926 11008342 ~ 11009632 (-)
LOC113531821 gen1 coding upstream 83803 11012219 ~ 11028405 (-)
agbl5 agbl5 coding upstream 106668 11035084 ~ 11050606 (-)
G280640 NA non-coding downstream 5004 10906173 ~ 10908630 (-)
G280615 NA non-coding downstream 129341 10783361 ~ 10784293 (-)
G280527 NA non-coding downstream 135737 10776763 ~ 10777897 (-)
G280360 NA non-coding downstream 443259 10468686 ~ 10470375 (-)
G280398 NA non-coding downstream 448004 10463954 ~ 10465630 (-)
G280652 NA non-coding upstream 2322 10930738 ~ 10930980 (-)
G280812 NA non-coding upstream 241470 11169886 ~ 11172446 (-)
G280817 NA non-coding upstream 251515 11179931 ~ 11182051 (-)
G280818 NA non-coding upstream 254650 11183066 ~ 11184143 (-)
G280841 NA non-coding upstream 331375 11259791 ~ 11259991 (-)
LOC113532274 NA other downstream 617436 10255972 ~ 10296198 (-)
cracr2ab LOC108280118 other downstream 1021248 9878481 ~ 9892386 (-)
G279415 NA other downstream 1705071 9207351 ~ 9208563 (-)
G278912 NA other downstream 2693954 8218561 ~ 8219680 (-)
G278634 NA other downstream 2845557 8053088 ~ 8068077 (-)
si:ch211-51e12.7 LOC108280090 other upstream 66689 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 150752 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 310519 11238935 ~ 11259412 (-)
G281074 rad51ap1 other upstream 657888 11586304 ~ 11588024 (-)
G281092 mansc1 other upstream 729474 11657890 ~ 11660327 (-)

Expression


Co-expression Network