sox5 (sox5,LOC107725540,LOC107590035,LOC107587062)


Basic Information

Item Value
gene id sox5
gene name sox5,LOC107725540,LOC107590035,LOC107587062
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5080812 ~ 5315907 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923345.2
GAGTGTGTGCGCGTGACggacacagatacacacacacagaggcagaagCGGTCTCGGCTGTGTGAGAGGTTAGAGGATCACTACAgcggggtgtgtgtgagtgtccgAGCGCAGTGcagcgggtgtgtgtgtgtgggtgtgggtgtgtgggtgtgtgtggggttctCCCTGGCTGTCGGTCGGACGTgtgtatgttgttgttgttgtggaaGGATCCTTGTGGTGTGAAACCCCCCGTGTTCCAGCATGCTCACAGAGCCTGAGATACCTCAGGAGTTTAACAGGATGTCTTCCAAGCGACCAGCCTCTCCATATGGGGGAACAGATGGAGAGGTAGTCATGGCGACGAGCAGACAGCGATTGGACGATGACGAGGTTGACGGACATGCTGTCATTCACCTGCCCCTGAGCTCGTACTGCAGCTCGCCACGCGCCCCGGACAGCCCGCCCACACTACACAGCAGCACGGAGCAGGAGAGCAGTAAAGGCCAGGCCCTGAGCCCATACCCCCAGCACAACTCTTCTACCTCACCCAGTAAACAGCAACAGCAGGACGAGGGCTCAGGTTCGGCCACGGCTCTGGGAACGCCGGAGAGGCGTAAAGGCAGCCTGGCCGACGTAGTGGACACGCTGAAACAGCGCAAGATGGAGGAGCTGATCAAGAGCGAGCCTGAGGAGGCCCCCAGCATTGAGAGGCTTCTGTCCAAGGATTGGAAGGACAAGCTGCTCGCGATGGGCTCCGGTCACTTCGGAGAGATCAAAGGTACCCCGGACAGCCTGGCGGAGAAGGAGAGGCAGCTGATGGGGATGATCAGCCAGCTGAGCAGCCTGAGGGAGCAGCTGTTAGCCGCCCACGAGGAGCAGAAGAAGCTGGCCGCCTCGCAGATCGAGAAACAGAGACAGCAGATGGAGCTGGCCAAGCAGCAGCAAGaccagATTGCTCGACAACAACAGCAGCTTCTGCAGCAACAGCACAAAATCAACCTCCTGCAGCAACAGATCCAGcaGGTCCAGGGTCAGCTGCCACCTCTGATGATTCCTGTTTTCCCTCCAGACCAGAGGACTCTGGCAGCAGCCGCAGCCCAGCAAGGATTCCTCCTGCCCCCAGGCTTCAACTACAAAACCGGCTGCActGACCCATACCCCCTTCAACTGATCCCAACCACCATGgcagctgctgcagctgccacaCCAGGCCTCGGACCTCTTCAGCTTCAGCAGCTGTATGCAGCTCAGTTGGCAGCCATGCAGGTATCTCCGGGGTCCAAGCACAGCGCCGTGCCCCAGCCCAACCTGGCAGCAGGAACGCACTCGCCTACCAGTGGCCAGAGCGAGAAGAGCAGGAGCAGCCCACCACCCAAGGCCAAGGACGAGGGCGCTCAGCCCCTGAATCTGTCATCCAAGCCTAAGACATCCGAGAGCAAGTCACCCACCTCCCCCGCTTCCCCACAGGTCCCTGCCATGAAGCTGGGTCCCGGATCCATGAAGCACAGTGCCCCCTCAAGCATCGGAGGACCTCCACCCAGAGTCAGCTCCATAGACCTGCTGTCCTCCATCACTTCTGGAGGCTACCTGAACGACCACGAGGCCGTGAGCAAGGCCTTCCAGGAGGCACGGCAGATGAAGGAGCAGCTGAAGAGAGAGCAGCAGGTCCTGGATGCCAAAGTGGCAGCGGTTAACAACCTCACCCTCAACAACGGACGCTTGGAAAAGgaGAAAGCAGCTCTTGAAAGCCTGAGTCAGCAGATGAAACAGTCCGAGGAGAACAAGTTCACTCACGCCATGATGGACTTCGGCATGAGCGGCGACTCCGACGGCAGCCCCAGCGTGTCAGATTCGAGGATTTTCCGCGAGGCTCGAGGTCGTGGTAACGGTGAACCACACATCAAGAGGCCCATGAACGCCTTCATGGTTTGGGCAAAAGACGAGAGGAGGAAAATCCTGCAGGCTTTTCCCGACATGCATAACTCCAACATCAGCAAAATCCTCGGTTCTCGCTGGAAGGCTATGACTAATCTGGAGAAGCAGCCGTACTACGAGGAGCAGGCTCGTCTCAGCAAGCAGCACCTGGAGAAATACCCCGACTACAAGTACAAGCCGCGGCCCAAGCGCACCTGCCTGGTGGACGGCAAGAAGCTGCGCATCGGCGAGTACAAGGCCATCATGCGCAACCGCAGACAGGAGATGCGTCAGTACTTCACTGTGGGgcagCAGGCCCAGTTGCCGCTCTCCTCAGCGGGCGTGGTCTACCCCGGCGCTCTGTCCATGGCGGGCATGCCGTCCCCTCAGATGCCGTCTGAGCACTCGAGCATGTCCAGCAGCCCCGAGCCAGCTCCGCCCACCGGCCCGCCCTCGTACCTCAGCATCAGCAAGGGGGACGAGCCTCGCATCAAGGAGGAGGTGCTGCGGATGGACGAGAGCAACGGCGACGCCTACGACGACTTCGACTACGAGGACGAGGACGGAGACTTCGGCAGCGACAGCGAAAATCACGTCGcgcagtaaataaaaaaaaaaaacacttttttttggaGCTGATCCCTCGTTTCTTGTCCCGCCCTGCCTCTATTCCACCCAATCAGGACTCAGAAAGAGCCACACCCACAACCCCCTCCTAACCCCTCCCTGATACCAGCAGCAGTAAAGCACAGGACGTGTCAGAGTAACTGTTACACTAAATGAGAACGTCGGACGTCACGTGAGCGAACACATCTCGAGTAAGCTACAGAAAGTAAGATATGATAAGATAAGGaaactttcacaaaaaaaaaaacttattataataaaaaaacaggacCTGTTCTTCGGCCTGTCACTTTAAAACGGT
>XM_026923346.2
GAGTGTGTGCGCGTGACggacacagatacacacacacagaggcagaagCGGTCTCGGCTGTGTGAGAGGTTAGAGGATCACTACAgcggggtgtgtgtgagtgtccgAGCGCAGTGcagcgggtgtgtgtgtgtgggtgtgggtgtgtgggtgtgtgtggggttctCCCTGGCTGTCGGTCGGACGTgtgtatgttgttgttgttgtggaaGGATCCTTGTGGTGTGAAACCCCCCGTGTTCCAGCATGCTCACAGAGCCTGAGATACCTCAGGAGTTTAACAGGATGTCTTCCAAGCGACCAGCCTCTCCATATGGGGGAACAGATGGAGAGGTAGTCATGGCGACGAGCAGACAGCGATTGGACGATGACGAGGTTGACGGACATGCTGTCATTCACCTGCCCCTGAGCTCGTACTGCAGCTCGCCACGCGCCCCGGACAGCCCGCCCACACTACACAGCAGCACGGAGCAGGAGAGCAGTAAAGGCCAGGCCCTGAGCCCATACCCCCAGCACAACTCTTCTACCTCACCCAGTAAACAGCAACAGCAGGACGAGGGCTCAGGTTCGGCCACGGCTCTGGGAACGCCGGAGAGGCGTAAAGGCAGCCTGGCCGACGTAGTGGACACGCTGAAACAGCGCAAGATGGAGGAGCTGATCAAGAGCGAGCCTGAGGAGGCCCCCAGCATTGAGAGGCTTCTGTCCAAGGATTGGAAGGACAAGCTGCTCGCGATGGGCTCCGGTCACTTCGGAGAGATCAAAGGTACCCCGGACAGCCTGGCGGAGAAGGAGAGGCAGCTGATGGGGATGATCAGCCAGCTGAGCAGCCTGAGGGAGCAGCTGTTAGCCGCCCACGAGGAGCAGAAGAAGCTGGCCGCCTCGCAGATCGAGAAACAGAGACAGCAGATGGAGCTGGCCAAGCAGCAGCAAGaccagATTGCTCGACAACAACAGCAGCTTCTGCAGCAACAGCACAAAATCAACCTCCTGCAGCAACAGATCCAGGTCCAGGGTCAGCTGCCACCTCTGATGATTCCTGTTTTCCCTCCAGACCAGAGGACTCTGGCAGCAGCCGCAGCCCAGCAAGGATTCCTCCTGCCCCCAGGCTTCAACTACAAAACCGGCTGCActGACCCATACCCCCTTCAACTGATCCCAACCACCATGgcagctgctgcagctgccacaCCAGGCCTCGGACCTCTTCAGCTTCAGCAGCTGTATGCAGCTCAGTTGGCAGCCATGCAGGTATCTCCGGGGTCCAAGCACAGCGCCGTGCCCCAGCCCAACCTGGCAGCAGGAACGCACTCGCCTACCAGTGGCCAGAGCGAGAAGAGCAGGAGCAGCCCACCACCCAAGGCCAAGGACGAGGGCGCTCAGCCCCTGAATCTGTCATCCAAGCCTAAGACATCCGAGAGCAAGTCACCCACCTCCCCCGCTTCCCCACAGGTCCCTGCCATGAAGCTGGGTCCCGGATCCATGAAGCACAGTGCCCCCTCAAGCATCGGAGGACCTCCACCCAGAGTCAGCTCCATAGACCTGCTGTCCTCCATCACTTCTGGAGGCTACCTGAACGACCACGAGGCCGTGAGCAAGGCCTTCCAGGAGGCACGGCAGATGAAGGAGCAGCTGAAGAGAGAGCAGCAGGTCCTGGATGCCAAAGTGGCAGCGGTTAACAACCTCACCCTCAACAACGGACGCTTGGAAAAGgaGAAAGCAGCTCTTGAAAGCCTGAGTCAGCAGATGAAACAGTCCGAGGAGAACAAGTTCACTCACGCCATGATGGACTTCGGCATGAGCGGCGACTCCGACGGCAGCCCCAGCGTGTCAGATTCGAGGATTTTCCGCGAGGCTCGAGGTCGTGGTAACGGTGAACCACACATCAAGAGGCCCATGAACGCCTTCATGGTTTGGGCAAAAGACGAGAGGAGGAAAATCCTGCAGGCTTTTCCCGACATGCATAACTCCAACATCAGCAAAATCCTCGGTTCTCGCTGGAAGGCTATGACTAATCTGGAGAAGCAGCCGTACTACGAGGAGCAGGCTCGTCTCAGCAAGCAGCACCTGGAGAAATACCCCGACTACAAGTACAAGCCGCGGCCCAAGCGCACCTGCCTGGTGGACGGCAAGAAGCTGCGCATCGGCGAGTACAAGGCCATCATGCGCAACCGCAGACAGGAGATGCGTCAGTACTTCACTGTGGGgcagCAGGCCCAGTTGCCGCTCTCCTCAGCGGGCGTGGTCTACCCCGGCGCTCTGTCCATGGCGGGCATGCCGTCCCCTCAGATGCCGTCTGAGCACTCGAGCATGTCCAGCAGCCCCGAGCCAGCTCCGCCCACCGGCCCGCCCTCGTACCTCAGCATCAGCAAGGGGGACGAGCCTCGCATCAAGGAGGAGGTGCTGCGGATGGACGAGAGCAACGGCGACGCCTACGACGACTTCGACTACGAGGACGAGGACGGAGACTTCGGCAGCGACAGCGAAAATCACGTCGcgcagtaaataaaaaaaaaaaacacttttttttggaGCTGATCCCTCGTTTCTTGTCCCGCCCTGCCTCTATTCCACCCAATCAGGACTCAGAAAGAGCCACACCCACAACCCCCTCCTAACCCCTCCCTGATACCAGCAGCAGTAAAGCACAGGACGTGTCAGAGTAACTGTTACACTAAATGAGAACGTCGGACGTCACGTGAGCGAACACATCTCGAGTAAGCTACAGAAAGTAAGATATGATAAGATAAGGaaactttcacaaaaaaaaaaacttattataataaaaaaacaggacCTGTTCTTCGGCCTGTCACTTTAAAACGGT
>XM_026923347.2
aaaaaaaaaaaatccacactcCACATCCTGAGACTCTTCTCCTGCGGATAAAGCGTGCAGCTGTTCGgattcCTGCGTTCACCGATGGCTCAGTGGTGTGAAGACAGGCTTTCGTCTCCGTCCCGCTGTTAGTAGTTGAGTTGAATTAAAATCCAGAACATTCTACAGACTCGACCTCACAGAGACCAGTACAGCAAGGGGCTCACTGACGCATCCTGCTGTTGAacacacgctctcacacaccGAGGGGGAATGAAGACCGCTGAACCTGAAGACAGGATGTCTTCCAAGCGACCAGCCTCTCCATATGGGGGAACAGATGGAGAGGTAGTCATGGCGACGAGCAGACAGCGATTGGACGATGACGAGGTTGACGGACATGCTGTCATTCACCTGCCCCTGAGCTCGTACTGCAGCTCGCCACGCGCCCCGGACAGCCCGCCCACACTACACAGCAGCACGGAGCAGGAGAGCAGTAAAGGCCAGGCCCTGAGCCCATACCCCCAGCACAACTCTTCTACCTCACCCAGTAAACAGCAACAGCAGGACGAGGGCTCAGGTTCGGCCACGGCTCTGGGAACGCCGGAGAGGCGTAAAGGCAGCCTGGCCGACGTAGTGGACACGCTGAAACAGCGCAAGATGGAGGAGCTGATCAAGAGCGAGCCTGAGGAGGCCCCCAGCATTGAGAGGCTTCTGTCCAAGGATTGGAAGGACAAGCTGCTCGCGATGGGCTCCGGTCACTTCGGAGAGATCAAAGGTACCCCGGACAGCCTGGCGGAGAAGGAGAGGCAGCTGATGGGGATGATCAGCCAGCTGAGCAGCCTGAGGGAGCAGCTGTTAGCCGCCCACGAGGAGCAGAAGAAGCTGGCCGCCTCGCAGATCGAGAAACAGAGACAGCAGATGGAGCTGGCCAAGCAGCAGCAAGaccagATTGCTCGACAACAACAGCAGCTTCTGCAGCAACAGCACAAAATCAACCTCCTGCAGCAACAGATCCAGcaGGTCCAGGGTCAGCTGCCACCTCTGATGATTCCTGTTTTCCCTCCAGACCAGAGGACTCTGGCAGCAGCCGCAGCCCAGCAAGGATTCCTCCTGCCCCCAGGCTTCAACTACAAAACCGGCTGCActGACCCATACCCCCTTCAACTGATCCCAACCACCATGgcagctgctgcagctgccacaCCAGGCCTCGGACCTCTTCAGCTTCAGCAGCTGTATGCAGCTCAGTTGGCAGCCATGCAGGTATCTCCGGGGTCCAAGCACAGCGCCGTGCCCCAGCCCAACCTGGCAGCAGGAACGCACTCGCCTACCAGTGGCCAGAGCGAGAAGAGCAGGAGCAGCCCACCACCCAAGGCCAAGGACGAGGGCGCTCAGCCCCTGAATCTGTCATCCAAGCCTAAGACATCCGAGAGCAAGTCACCCACCTCCCCCGCTTCCCCACAGGTCCCTGCCATGAAGCTGGGTCCCGGATCCATGAAGCACAGTGCCCCCTCAAGCATCGGAGGACCTCCACCCAGAGTCAGCTCCATAGACCTGCTGTCCTCCATCACTTCTGGAGGCTACCTGAACGACCACGAGGCCGTGAGCAAGGCCTTCCAGGAGGCACGGCAGATGAAGGAGCAGCTGAAGAGAGAGCAGCAGGTCCTGGATGCCAAAGTGGCAGCGGTTAACAACCTCACCCTCAACAACGGACGCTTGGAAAAGgaGAAAGCAGCTCTTGAAAGCCTGAGTCAGCAGATGAAACAGTCCGAGGAGAACAAGTTCACTCACGCCATGATGGACTTCGGCATGAGCGGCGACTCCGACGGCAGCCCCAGCGTGTCAGATTCGAGGATTTTCCGCGAGGCTCGAGGTCGTGGTAACGGTGAACCACACATCAAGAGGCCCATGAACGCCTTCATGGTTTGGGCAAAAGACGAGAGGAGGAAAATCCTGCAGGCTTTTCCCGACATGCATAACTCCAACATCAGCAAAATCCTCGGTTCTCGCTGGAAGGCTATGACTAATCTGGAGAAGCAGCCGTACTACGAGGAGCAGGCTCGTCTCAGCAAGCAGCACCTGGAGAAATACCCCGACTACAAGTACAAGCCGCGGCCCAAGCGCACCTGCCTGGTGGACGGCAAGAAGCTGCGCATCGGCGAGTACAAGGCCATCATGCGCAACCGCAGACAGGAGATGCGTCAGTACTTCACTGTGGGgcagCAGGCCCAGTTGCCGCTCTCCTCAGCGGGCGTGGTCTACCCCGGCGCTCTGTCCATGGCGGGCATGCCGTCCCCTCAGATGCCGTCTGAGCACTCGAGCATGTCCAGCAGCCCCGAGCCAGCTCCGCCCACCGGCCCGCCCTCGTACCTCAGCATCAGCAAGGGGGACGAGCCTCGCATCAAGGAGGAGGTGCTGCGGATGGACGAGAGCAACGGCGACGCCTACGACGACTTCGACTACGAGGACGAGGACGGAGACTTCGGCAGCGACAGCGAAAATCACGTCGcgcagtaaataaaaaaaaaaaacacttttttttggaGCTGATCCCTCGTTTCTTGTCCCGCCCTGCCTCTATTCCACCCAATCAGGACTCAGAAAGAGCCACACCCACAACCCCCTCCTAACCCCTCCCTGATACCAGCAGCAGTAAAGCACAGGACGTGTCAGAGTAACTGTTACACTAAATGAGAACGTCGGACGTCACGTGAGCGAACACATCTCGAGTAAGCTACAGAAAGTAAGATATGATAAGATAAGGaaactttcacaaaaaaaaaaacttattataataaaaaaacaggacCTGTTCTTCGGCCTGTCACTTTAAAACGGT
>XM_026923348.2
CAGCAGCGTgcgcgtgtgtctgtgtgtgtgagcgctcGTCCGCTCATCTCTTCTGTCCTGATGGCTGCGTCTCTGATGTCTTCCAAGCGACCAGCCTCTCCATATGGGGGAACAGATGGAGAGGTAGTCATGGCGACGAGCAGACAGCGATTGGACGATGACGAGGTTGACGGACATGCTGTCATTCACCTGCCCCTGAGCTCGTACTGCAGCTCGCCACGCGCCCCGGACAGCCCGCCCACACTACACAGCAGCACGGAGCAGGAGAGCAGTAAAGGCCAGGCCCTGAGCCCATACCCCCAGCACAACTCTTCTACCTCACCCAGTAAACAGCAACAGCAGGACGAGGGCTCAGGTTCGGCCACGGCTCTGGGAACGCCGGAGAGGCGTAAAGGCAGCCTGGCCGACGTAGTGGACACGCTGAAACAGCGCAAGATGGAGGAGCTGATCAAGAGCGAGCCTGAGGAGGCCCCCAGCATTGAGAGGCTTCTGTCCAAGGATTGGAAGGACAAGCTGCTCGCGATGGGCTCCGGTCACTTCGGAGAGATCAAAGGTACCCCGGACAGCCTGGCGGAGAAGGAGAGGCAGCTGATGGGGATGATCAGCCAGCTGAGCAGCCTGAGGGAGCAGCTGTTAGCCGCCCACGAGGAGCAGAAGAAGCTGGCCGCCTCGCAGATCGAGAAACAGAGACAGCAGATGGAGCTGGCCAAGCAGCAGCAAGaccagATTGCTCGACAACAACAGCAGCTTCTGCAGCAACAGCACAAAATCAACCTCCTGCAGCAACAGATCCAGcaGGTCCAGGGTCAGCTGCCACCTCTGATGATTCCTGTTTTCCCTCCAGACCAGAGGACTCTGGCAGCAGCCGCAGCCCAGCAAGGATTCCTCCTGCCCCCAGGCTTCAACTACAAAACCGGCTGCActGACCCATACCCCCTTCAACTGATCCCAACCACCATGgcagctgctgcagctgccacaCCAGGCCTCGGACCTCTTCAGCTTCAGCAGCTGTATGCAGCTCAGTTGGCAGCCATGCAGGTATCTCCGGGGTCCAAGCACAGCGCCGTGCCCCAGCCCAACCTGGCAGCAGGAACGCACTCGCCTACCAGTGGCCAGAGCGAGAAGAGCAGGAGCAGCCCACCACCCAAGGCCAAGGACGAGGGCGCTCAGCCCCTGAATCTGTCATCCAAGCCTAAGACATCCGAGAGCAAGTCACCCACCTCCCCCGCTTCCCCACAGGTCCCTGCCATGAAGCTGGGTCCCGGATCCATGAAGCACAGTGCCCCCTCAAGCATCGGAGGACCTCCACCCAGAGTCAGCTCCATAGACCTGCTGTCCTCCATCACTTCTGGAGGCTACCTGAACGACCACGAGGCCGTGAGCAAGGCCTTCCAGGAGGCACGGCAGATGAAGGAGCAGCTGAAGAGAGAGCAGCAGGTCCTGGATGCCAAAGTGGCAGCGGTTAACAACCTCACCCTCAACAACGGACGCTTGGAAAAGgaGAAAGCAGCTCTTGAAAGCCTGAGTCAGCAGATGAAACAGTCCGAGGAGAACAAGTTCACTCACGCCATGATGGACTTCGGCATGAGCGGCGACTCCGACGGCAGCCCCAGCGTGTCAGATTCGAGGATTTTCCGCGAGGCTCGAGGTCGTGGTAACGGTGAACCACACATCAAGAGGCCCATGAACGCCTTCATGGTTTGGGCAAAAGACGAGAGGAGGAAAATCCTGCAGGCTTTTCCCGACATGCATAACTCCAACATCAGCAAAATCCTCGGTTCTCGCTGGAAGGCTATGACTAATCTGGAGAAGCAGCCGTACTACGAGGAGCAGGCTCGTCTCAGCAAGCAGCACCTGGAGAAATACCCCGACTACAAGTACAAGCCGCGGCCCAAGCGCACCTGCCTGGTGGACGGCAAGAAGCTGCGCATCGGCGAGTACAAGGCCATCATGCGCAACCGCAGACAGGAGATGCGTCAGTACTTCACTGTGGGgcagCAGGCCCAGTTGCCGCTCTCCTCAGCGGGCGTGGTCTACCCCGGCGCTCTGTCCATGGCGGGCATGCCGTCCCCTCAGATGCCGTCTGAGCACTCGAGCATGTCCAGCAGCCCCGAGCCAGCTCCGCCCACCGGCCCGCCCTCGTACCTCAGCATCAGCAAGGGGGACGAGCCTCGCATCAAGGAGGAGGTGCTGCGGATGGACGAGAGCAACGGCGACGCCTACGACGACTTCGACTACGAGGACGAGGACGGAGACTTCGGCAGCGACAGCGAAAATCACGTCGcgcagtaaataaaaaaaaaaaacacttttttttggaGCTGATCCCTCGTTTCTTGTCCCGCCCTGCCTCTATTCCACCCAATCAGGACTCAGAAAGAGCCACACCCACAACCCCCTCCTAACCCCTCCCTGATACCAGCAGCAGTAAAGCACAGGACGTGTCAGAGTAACTGTTACACTAAATGAGAACGTCGGACGTCACGTGAGCGAACACATCTCGAGTAAGCTACAGAAAGTAAGATATGATAAGATAAGGaaactttcacaaaaaaaaaaacttattataataaaaaaacaggacCTGTTCTTCGGCCTGTCACTTTAAAACGGT
>XM_026923349.2
aaaaaaaaaaaatccacactcCACATCCTGAGACTCTTCTCCTGCGGATAAAGCGTGCAGCTGTTCGgattcCTGCGTTCACCGATGGCTCAGTGGTGTGAAGACAGGCTTTCGTCTCCGTCCCGCTGTTAGTAGTTGAGTTGAATTAAAATCCAGAACATTCTACAGACTCGACCTCACAGAGACCAGTACAGCAAGGGGCTCACTGGATGTCTTCCAAGCGACCAGCCTCTCCATATGGGGGAACAGATGGAGAGGTAGTCATGGCGACGAGCAGACAGCGATTGGACGATGACGAGGTTGACGGACATGCTGTCATTCACCTGCCCCTGAGCTCGTACTGCAGCTCGCCACGCGCCCCGGACAGCCCGCCCACACTACACAGCAGCACGGAGCAGGAGAGCAGTAAAGGCCAGGCCCTGAGCCCATACCCCCAGCACAACTCTTCTACCTCACCCAGTAAACAGCAACAGCAGGACGAGGGCTCAGGTTCGGCCACGGCTCTGGGAACGCCGGAGAGGCGTAAAGGCAGCCTGGCCGACGTAGTGGACACGCTGAAACAGCGCAAGATGGAGGAGCTGATCAAGAGCGAGCCTGAGGAGGCCCCCAGCATTGAGAGGCTTCTGTCCAAGGATTGGAAGGACAAGCTGCTCGCGATGGGCTCCGGTCACTTCGGAGAGATCAAAGGTACCCCGGACAGCCTGGCGGAGAAGGAGAGGCAGCTGATGGGGATGATCAGCCAGCTGAGCAGCCTGAGGGAGCAGCTGTTAGCCGCCCACGAGGAGCAGAAGAAGCTGGCCGCCTCGCAGATCGAGAAACAGAGACAGCAGATGGAGCTGGCCAAGCAGCAGCAAGaccagATTGCTCGACAACAACAGCAGCTTCTGCAGCAACAGCACAAAATCAACCTCCTGCAGCAACAGATCCAGcaGGTCCAGGGTCAGCTGCCACCTCTGATGATTCCTGTTTTCCCTCCAGACCAGAGGACTCTGGCAGCAGCCGCAGCCCAGCAAGGATTCCTCCTGCCCCCAGGCTTCAACTACAAAACCGGCTGCActGACCCATACCCCCTTCAACTGATCCCAACCACCATGgcagctgctgcagctgccacaCCAGGCCTCGGACCTCTTCAGCTTCAGCAGCTGTATGCAGCTCAGTTGGCAGCCATGCAGGTATCTCCGGGGTCCAAGCACAGCGCCGTGCCCCAGCCCAACCTGGCAGCAGGAACGCACTCGCCTACCAGTGGCCAGAGCGAGAAGAGCAGGAGCAGCCCACCACCCAAGGCCAAGGACGAGGGCGCTCAGCCCCTGAATCTGTCATCCAAGCCTAAGACATCCGAGAGCAAGTCACCCACCTCCCCCGCTTCCCCACAGGTCCCTGCCATGAAGCTGGGTCCCGGATCCATGAAGCACAGTGCCCCCTCAAGCATCGGAGGACCTCCACCCAGAGTCAGCTCCATAGACCTGCTGTCCTCCATCACTTCTGGAGGCTACCTGAACGACCACGAGGCCGTGAGCAAGGCCTTCCAGGAGGCACGGCAGATGAAGGAGCAGCTGAAGAGAGAGCAGCAGGTCCTGGATGCCAAAGTGGCAGCGGTTAACAACCTCACCCTCAACAACGGACGCTTGGAAAAGgaGAAAGCAGCTCTTGAAAGCCTGAGTCAGCAGATGAAACAGTCCGAGGAGAACAAGTTCACTCACGCCATGATGGACTTCGGCATGAGCGGCGACTCCGACGGCAGCCCCAGCGTGTCAGATTCGAGGATTTTCCGCGAGGCTCGAGGTCGTGGTAACGGTGAACCACACATCAAGAGGCCCATGAACGCCTTCATGGTTTGGGCAAAAGACGAGAGGAGGAAAATCCTGCAGGCTTTTCCCGACATGCATAACTCCAACATCAGCAAAATCCTCGGTTCTCGCTGGAAGGCTATGACTAATCTGGAGAAGCAGCCGTACTACGAGGAGCAGGCTCGTCTCAGCAAGCAGCACCTGGAGAAATACCCCGACTACAAGTACAAGCCGCGGCCCAAGCGCACCTGCCTGGTGGACGGCAAGAAGCTGCGCATCGGCGAGTACAAGGCCATCATGCGCAACCGCAGACAGGAGATGCGTCAGTACTTCACTGTGGGgcagCAGGCCCAGTTGCCGCTCTCCTCAGCGGGCGTGGTCTACCCCGGCGCTCTGTCCATGGCGGGCATGCCGTCCCCTCAGATGCCGTCTGAGCACTCGAGCATGTCCAGCAGCCCCGAGCCAGCTCCGCCCACCGGCCCGCCCTCGTACCTCAGCATCAGCAAGGGGGACGAGCCTCGCATCAAGGAGGAGGTGCTGCGGATGGACGAGAGCAACGGCGACGCCTACGACGACTTCGACTACGAGGACGAGGACGGAGACTTCGGCAGCGACAGCGAAAATCACGTCGcgcagtaaataaaaaaaaaaaacacttttttttggaGCTGATCCCTCGTTTCTTGTCCCGCCCTGCCTCTATTCCACCCAATCAGGACTCAGAAAGAGCCACACCCACAACCCCCTCCTAACCCCTCCCTGATACCAGCAGCAGTAAAGCACAGGACGTGTCAGAGTAACTGTTACACTAAATGAGAACGTCGGACGTCACGTGAGCGAACACATCTCGAGTAAGCTACAGAAAGTAAGATATGATAAGATAAGGaaactttcacaaaaaaaaaaacttattataataaaaaaacaggacCTGTTCTTCGGCCTGTCACTTTAAAACGGT
>XM_026923350.2
GAGTGTGTGCGCGTGACggacacagatacacacacacagaggcagaagCGGTCTCGGCTGTGTGAGAGGTTAGAGGATCACTACAgcggggtgtgtgtgagtgtccgAGCGCAGTGcagcgggtgtgtgtgtgtgggtgtgggtgtgtgggtgtgtgtggggttctCCCTGGCTGTCGGTCGGACGTgtgtatgttgttgttgttgtggaaGGATCCTTGTGGTGTGAAACCCCCCGTGTTCCAGCATGCTCACAGAGCCTGAGATACCTCAGGAGTTTAACAGGATGTCTTCCAAGCGACCAGCCTCTCCATATGGGGGAACAGATGGAGAGGTAGTCATGGCGACGAGCAGACAGCGATTGGACGATGACGAGGTTGACGGACATGCTGTCATTCACCTGCCCCTGAGCTCGTACTGCAGCTCGCCACGCGCCCCGGACAGCCCGCCCACACTACACAGCAGCACGGAGCAGGAGAGCAGTAAAGGCCAGGCCCTGAGCCCATACCCCCAGCACAACTCTTCTACCTCACCCAGTAAACAGCAACAGCAGGACGAGGGCTCAGGTTCGGCCACGGCTCTGGGAACGCCGGAGAGGCGTAAAGGCAGCCTGGCCGACGTAGTGGACACGCTGAAACAGCGCAAGATGGAGGAGCTGATCAAGAGCGAGCCTGAGGAGGCCCCCAGCATTGAGAGGCTTCTGTCCAAGGATTGGAAGGACAAGCTGCTCGCGATGGGCTCCGGTCACTTCGGAGAGATCAAAGGTACCCCGGACAGCCTGGCGGAGAAGGAGAGGCAGCTGATGGGGATGATCAGCCAGCTGAGCAGCCTGAGGGAGCAGCTGTTAGCCGCCCACGAGGAGCAGAAGAAGCTGGCCGCCTCGCAGATCGAGAAACAGAGACAGCAGATGGAGCTGGCCAAGCAGCAGCAAGaccagATTGCTCGACAACAACAGCAGCTTCTGCAGCAACAGCACAAAATCAACCTCCTGCAGCAACAGATCCAGcaGGTCCAGGGTCAGCTGCCACCTCTGATGATTCCTGTTTTCCCTCCAGACCAGAGGACTCTGGCAGCAGCCGCAGCCCAGCAAGGATTCCTCCTGCCCCCAGGCTTCAACTACAAAACCGGCTGCActGACCCATACCCCCTTCAACTGATCCCAACCACCATGgcagctgctgcagctgccacaCCAGGCCTCGGACCTCTTCAGCTTCAGCAGCTGTATGCAGCTCAGTTGGCAGCCATGCAGGTATCTCCGGGGTCCAAGCACAGCGCCGTGCCCCAGCCCAACCTGGCAGCAGGAACGCACTCGCCTACCAGTGGCCAGAGCGAGAAGAGCAGGAGCAGCCCACCACCCAAGGCCAAGGTCCCTGCCATGAAGCTGGGTCCCGGATCCATGAAGCACAGTGCCCCCTCAAGCATCGGAGGACCTCCACCCAGAGTCAGCTCCATAGACCTGCTGTCCTCCATCACTTCTGGAGGCTACCTGAACGACCACGAGGCCGTGAGCAAGGCCTTCCAGGAGGCACGGCAGATGAAGGAGCAGCTGAAGAGAGAGCAGCAGGTCCTGGATGCCAAAGTGGCAGCGGTTAACAACCTCACCCTCAACAACGGACGCTTGGAAAAGgaGAAAGCAGCTCTTGAAAGCCTGAGTCAGCAGATGAAACAGTCCGAGGAGAACAAGTTCACTCACGCCATGATGGACTTCGGCATGAGCGGCGACTCCGACGGCAGCCCCAGCGTGTCAGATTCGAGGATTTTCCGCGAGGCTCGAGGTCGTGGTAACGGTGAACCACACATCAAGAGGCCCATGAACGCCTTCATGGTTTGGGCAAAAGACGAGAGGAGGAAAATCCTGCAGGCTTTTCCCGACATGCATAACTCCAACATCAGCAAAATCCTCGGTTCTCGCTGGAAGGCTATGACTAATCTGGAGAAGCAGCCGTACTACGAGGAGCAGGCTCGTCTCAGCAAGCAGCACCTGGAGAAATACCCCGACTACAAGTACAAGCCGCGGCCCAAGCGCACCTGCCTGGTGGACGGCAAGAAGCTGCGCATCGGCGAGTACAAGGCCATCATGCGCAACCGCAGACAGGAGATGCGTCAGTACTTCACTGTGGGgcagCAGGCCCAGTTGCCGCTCTCCTCAGCGGGCGTGGTCTACCCCGGCGCTCTGTCCATGGCGGGCATGCCGTCCCCTCAGATGCCGTCTGAGCACTCGAGCATGTCCAGCAGCCCCGAGCCAGCTCCGCCCACCGGCCCGCCCTCGTACCTCAGCATCAGCAAGGGGGACGAGCCTCGCATCAAGGAGGAGGTGCTGCGGATGGACGAGAGCAACGGCGACGCCTACGACGACTTCGACTACGAGGACGAGGACGGAGACTTCGGCAGCGACAGCGAAAATCACGTCGcgcagtaaataaaaaaaaaaaacacttttttttggaGCTGATCCCTCGTTTCTTGTCCCGCCCTGCCTCTATTCCACCCAATCAGGACTCAGAAAGAGCCACACCCACAACCCCCTCCTAACCCCTCCCTGATACCAGCAGCAGTAAAGCACAGGACGTGTCAGAGTAACTGTTACACTAAATGAGAACGTCGGACGTCACGTGAGCGAACACATCTCGAGTAAGCTACAGAAAGTAAGATATGATAAGATAAGGaaactttcacaaaaaaaaaaacttattataataaaaaaacaggacCTGTTCTTCGGCCTGTCACTTTAAAACGGT

Function

symbol description
sox5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within with a negative effect on iridophore differentiation; melanocyte differentiation; and xanthophore differentiation. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; digestive system; fin; forebrain neural keel; and gonad. Orthologous to human SOX5 (SRY-box transcription factor 5).

NR:

description
PREDICTED: transcription factor SOX-5-like isoform X10

GO: NA

KEGG:

id description
K09269 SOX5_6_13; transcription factor SOX5/6/13 (SOX group D)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923345.2 True 2827 mRNA 0.58 15 5080812 5188515
XM_026923346.2 False 2824 mRNA 0.58 15 5080812 5188515
XM_026923347.2 False 2821 mRNA 0.57 18 5080812 5315907
XM_026923348.2 False 2617 mRNA 0.58 15 5080812 5185777
XM_026923349.2 False 2751 mRNA 0.57 17 5080812 5315907
XM_026923350.2 False 2743 mRNA 0.58 15 5080812 5188515

Neighbor

gene id symbol gene type direction distance location
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding downstream 77021 4988481 ~ 5003791 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding downstream 115719 4954291 ~ 4965093 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding downstream 141999 4925716 ~ 4938813 (-)
gys2 gys2,LOC107659841,LOC107694689 coding downstream 163032 4897270 ~ 4917780 (-)
psmc2 psmc2,LOC103382982 coding downstream 288015 4784128 ~ 4792797 (-)
bcat1 bcat1,LOC107725514,LOC107659834,LOC107587341 coding upstream 23866 5339773 ~ 5361979 (-)
casc1 casc1 coding upstream 89567 5405474 ~ 5419057 (-)
parpbp parpbp coding upstream 148406 5464313 ~ 5487007 (-)
th2 LOC108279869,LOC108437952,LOC107695848 coding upstream 198175 5514082 ~ 5528820 (-)
pah pah coding upstream 213249 5529156 ~ 5550953 (-)
LOC113531850 NA non-coding downstream 135534 4943549 ~ 4945278 (-)
G276753 NA non-coding downstream 199804 4880418 ~ 4881008 (-)
G276761 NA non-coding downstream 204020 4817108 ~ 4876792 (-)
G276755 prdm4 non-coding downstream 236441 4801907 ~ 4844371 (-)
G276749 NA non-coding downstream 281655 4798659 ~ 4799157 (-)
G277065 NA non-coding upstream 39993 5355900 ~ 5358204 (-)
G277066 NA non-coding upstream 42544 5358451 ~ 5359228 (-)
G277443 NA non-coding upstream 131244 5447151 ~ 5448687 (-)
G277447 NA non-coding upstream 244027 5559934 ~ 5560322 (-)
G277494 dcn non-coding upstream 342577 5658484 ~ 5727420 (-)
tmpoa LOC108279628 other downstream 96497 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 341813 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 493716 4358625 ~ 4587096 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 665231 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 666385 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2106081 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 2650912 7966819 ~ 7970571 (-)
G278634 NA other upstream 2737181 8053088 ~ 8068077 (-)

Expression


Co-expression Network