cax1 (LOC108279788,LOC108444418,LOC107725610,LOC107690555,LOC107729854,LOC107584270)


Basic Information

Item Value
gene id cax1
gene name LOC108279788,LOC108444418,LOC107725610,LOC107690555,LOC107729854,LOC107584270
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 6808801 ~ 6827179 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923361.2
CGCGCGCCCGCTCCCTGGCATCGGCGGCGCGCACCGGCCACGCGCAGCAGTACACGCGCTCGTTCACGACATGAAGTTTGTTATCAGGAAAAGTTAAATCACTGAAGCTGCgttttacacaaaaacacacaacacacacaatgtcaacAGATGTGGAGTGTCTGAGGCGAAGGTCCACGGTTGATAGTTCAGAACTCCTGTGGGACCATGAGCACAGATTTCTTCGCCGTAGCTCCCAGTGTGACAGACTGTGTGTAGCCAGCATTCATCCCGAGATGGTCGATACTCCTTCACCCTGTGGCTCACACCATATCATCCATCACACGCCAAAATGCCTCTCGGCTCACAGACTCTCCGTACAATCACGCGGTACTGACGACGCCTGGCAGGAAGCGAGTCTGAGGACCACCATCCGCGCCGAGAACGAAGTAGAGGCACACAAACTGGTCAATAACTACATGTTTGGTTTCAGAAAGTGGAAGAGTCATGTTACAGAGCGTCCGATCGAGGACAGATCAGACCAGGTGAAGGAGTTATACTCTGAGCAGATCTTCATCAAACCCTATACAGgCTCGCTGATCAGCTTTGGCAACGTCGCCTATGCGCTTTTGTTTGGCTGGTGGATCTCTTTAGCTTATTTTCTTGTTAGCTTACTGATGTTTTGCACCATCATTGCGATTCCACATGGGAAACTCTGTTTCAAGTTGTCAGGTTATTTATTGTGGCCCTTTGGGAAAGCGTTACAAAAGACTAGCAGTCTGGTACGGAAATGCTGCGTTAAATTCCCCCACTGTGAAGCAATTCCAGAAGAAGCGGGTGATGTGAAGGAATCTCCGGATAATGTGAAGGAGTCCACACCTCTGATGAGTTCCCCACCTGTCACTAAAGATGgcccacctcctcctcctcctcagaaGCGCTCTTACTGGTGTTGTGTGAGCACGTATGTTTGGCTCGTGCTTGGTTACGTTCCTCTTGCTGTAATCCACTCCCTGGCCTGCTTCCTCTCCTGGATGATGGTCTTCACCATCCCTGTTAGCAAAATGAACGGCAGGATCCTCAGCATCGTCCTCTTCCTGCCACCTGACGAGATTCAGGTTCGACCGGTGAAGAACCCTCAAAATTGTGAAACGAGGGTTCTCCTGTGCTGCTACCGTGCCTTTAACTGGTACTACTACAAGTACACAGTGGACGGTATCAACGTCTTCGCCGTCAACCTGCTTTCCCTCGTCATCATCGCTCTGGTGATTGGTTATGTGGACCGTGATAATACTTTTGTTAGGTCTGAGGTGAAGTTTACCACAGCTGTGACCTCAATCATCCCCCTGTCTTACTACATCGGCATGGGTATAGCCAGTATCTCGGCTCAGAGTAACTTTGCAGTGGGAGCAGTAGTGAACGCCACGTTCGGTTCCATCACTGAGATGACCTTCTACATCACCGCCCTGCTGCAAGGTCATCGCATCGGGAACAAATGTTACGGAGAGATCGTTAAAGCTGCTCTCACAGGGACCCTGCTCGGATGCATCCTCTTTATTCcgGGTTTGTGTATGATCATCGGGGGCTGCAAGCACCGCGAGCAGAGATTCAACAGCCGATCAGCCGGAGTCAGCTCTGCCCTGCTCTTCATTTCAGTCGGAGGTGTTTTTGCTCCAACACTGTTCTCTAAAGCGTACGGGAACCTGGTGTGTGACAGCTGCAGTAATCCGTCTGGTAACATGACCGGACCCTTCATCTGCACGGACTGCCACTATGATCTGAGTGAGAACAACCGCTCCTTGTTCCTGAGTCATATTGAGCCTCTGGTGTATACGGTCTCCGTGCTTCTCCCTGCTGCGTATCTCATCGGTTTGATCTTCACACTgaagacgcacacacacatctacgaCATCCACGTCAGCGACGCACACTGCCATGtggcaAGTGACCATGATCCAGTGGTGCACTGGTCCAGATGGAGGGCTTTGGTGGTCCTGATCGTGGCCACGTTCCTGACAGCAGCCTGCGCAGACCTCACCACCGAGCACATCAAACCCATCATCTGTCACTCCAGCGTCTCGCAGTACTTTATTGGTGTTACTGTGCTGGCGATGGTTCCTGAACTTCCCGAAATAGTCAACGGGATCCAGTTCGCCCTGCAGAATAACATTAGTTTGAGcctgGAAGTCGGAAATTGTATCGCTGTGCAAGTCTGCATGCTTCAGATTCCACTATTGATCTTATTCAATGCTGTTTATGACGTTGGATTTGTTCTCATATTTAGCGACTTGCACCTGTGGGCGAGCATCTTCAGTGTCATCCTGGTCAATTACATCTTCATGGATGGAAAGTGTGACTATTTCCAggGAACGGCTCTGGTGGTTGTCTACCTCATCCTCCTGGCGTTGTACTTCTTCGCTCCGTCTCCCCGTGGCTGCTGATCATCCAGAAGTTTCTCACCGCGTTGTATTTTTCTCTCGTTTTACAGAAGagagtttttgtttgtacttaCACTAGTTCATCTCCTTACTTCACCGTACTTCGGGTATTTCGGGTGACGCTTTTCCTTGTGGAAATGTAATCGTTTTTCGAAtcgttgtgtgtatgtgtattgcagatttatatattaattgtgTCTGGAAAAAGAATACAATCCCACCTTTAGCTATGTGTTAAGCACTTAAAGAGGATATTTCCTTATTAGATTCTATCCTCTGTGGCAATAAATCtgtcaaaagaaaaatgttatacttaaatattcatttaaaaaatacaaagtatTAAACTATTCTTGATGGAGGTTTAAGTGGGACAGGGGACTGTGTTGAGTATCCTGTACCCCCCTGTGGTTCCCCTAAATATAACATGTTTGTGAA

Function

NR:

description
PREDICTED: putative cation exchanger C521.04c isoform X3

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0014032 neural crest cell development biological_process
GO:0006816 calcium ion transport biological_process
GO:0012505 endomembrane system cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07300 chaA, CAX; Ca2+:H+ antiporter

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923361.2 True 2855 mRNA 0.49 21 6808801 6827179

Neighbor

gene id symbol gene type direction distance location
exoc4 exoc4,LOC107555552,LOC107585070,LOC107676929,LOC107690838,LOC107729851 coding downstream 492498 6166536 ~ 6316303 (-)
lrguk lrguk coding downstream 644915 6133559 ~ 6163886 (-)
col7a1l LOC108279990,LOC108435442,LOC107676908 coding downstream 696092 6013024 ~ 6112709 (-)
trnam-cau_46 NA coding downstream 705654 6103076 ~ 6103147 (-)
LOC113532437 NA coding downstream 775608 6033029 ~ 6033193 (-)
smo smo,LOC107725609,LOC107729864,LOC107690544 coding upstream 1574 6828753 ~ 6842024 (-)
tspan33a tspan33,tspan33a,LOC107725621,LOC107676927 coding upstream 18719 6845898 ~ 6862027 (-)
nudt5 nudt5,LOC107658859,LOC107656337,LOC107726016,LOC107743836 coding upstream 36752 6863931 ~ 6869613 (-)
adipor2 adipor2 coding upstream 52350 6879529 ~ 6919689 (-)
wnt5b wnt5b,LOC108279752,LOC107656325,LOC107726030,LOC107572035,LOC107658849 coding upstream 99589 6926768 ~ 7035028 (-)
G277881 NA non-coding downstream 17326 6791262 ~ 6791475 (-)
G277878 NA non-coding downstream 21330 6783659 ~ 6787471 (-)
G277567 NA non-coding downstream 811409 5960674 ~ 5997392 (-)
G277577 NA non-coding downstream 820457 5978950 ~ 5988344 (-)
G277500 NA non-coding downstream 1027630 5778002 ~ 5781171 (-)
G278225 NA non-coding upstream 50573 6877752 ~ 6878941 (-)
G278265 NA non-coding upstream 244567 7071746 ~ 7074585 (-)
G278275 NA non-coding upstream 401826 7229005 ~ 7229440 (-)
LOC117599447 NA non-coding upstream 587169 7414348 ~ 7416071 (-)
G278312 NA non-coding upstream 668393 7495572 ~ 7496263 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other downstream 803672 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other downstream 824237 5982292 ~ 5984564 (-)
tmpoa LOC108279628 other downstream 1824486 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 2069802 4734931 ~ 4738999 (-)
LOC117599578 LOC108279645 other downstream 2326236 4466061 ~ 4482565 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 594809 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 1139640 7966819 ~ 7970571 (-)
G278634 NA other upstream 1225909 8053088 ~ 8068077 (-)
G278912 NA other upstream 1391382 8218561 ~ 8219680 (-)
G279415 NA other upstream 2380172 9207351 ~ 9208563 (-)

Expression


Co-expression Network