asb13a.2 (asb13a.2,LOC108280001,LOC108436004,LOC103022068,LOC107754063,LOC107560715,LOC107655562)


Basic Information

Item Value
gene id asb13a.2
gene name asb13a.2,LOC108280001,LOC108436004,LOC103022068,LOC107754063,LOC107560715,LOC107655562
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9559911 ~ 9593266 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923453.2
gtattttaatgattagaTAAAGTGTAGTTATGTTGTTATAAGTTATGAGACACTTTAGCtgtgtttcaaatgttttttacCTTTAACTTTACATGCATGTTGGGAAATGTAGTACCAGTGGGACACGACTAGTGGACTACAATTCCCATATTTCCCGGTAGACCCGAAACAGCAGCACGACCACGTGACTCAGACAGCGCGTTTGTAAACACGGCGTGTTTATGCGGCTTTATAACTGACTACTGACCGGTTCCTAAAGCGCGTTTAATTAAACATCTATTTAACGTGAAAGATGGAGGTGGAAACAGGAAGGCCGTATTTCTTCGGTGATATCGGCTTCTGGTCAGAGAGGACAGAGGTCCACAAGGCTGCGTATCGAGGCCACGTGTCCCATCTGCAGAGTCTGATCCAGAGTGGAGCTTCAGTGAATATAGTAGCTGTCGACTCCATCACTCCTCTGCATGAGGCGGCTATCCGAGGACAGACGCAGTGTGTGAGGCTGCTGCTGGACGCCGGAGCGCAGGTGGATGCGAGGAACGTGGATGGCAGCACTCCTCTGTGTGAGGCCTGTTCTGCTGGGAGCTCTGAATGTGTGCGGCTTCTCCTCGAGTACGGGGCAAAGGTTAACCCCGCCCTTACCTCTCGCACCACCTCCCCACTACACGAGGCCTGCATAGGAGGAAATGCTGAGTGTGTAAAGCTCGTGATAGCGAAAGGAGCCAGTCTGGAAGCCTATGATCTGTACAGCGGCACTCCACTTCATGTAGCCTGCGCTAACCAGCACCTGGAGTGTGTCAAGGTGCTACTCAATGcagGAGCGAAAGTAAACTCGGTCCGACTGCATGAGACAGCACTACACCACGCAGCAAAGGCCAACAACGTAGAAATGATCGAGCTTCTAGTGGAGTTCGGGGCAAACATCTACGCCAAAGATAAACACGAGAGGAAACCCGTTGACTACACCAGGCCTGACACACCAGCTGCTCTCTGTCTGCAGCTTTACGAGAgTTGTCCTCTGTCTCTGCAGCAGCTGAGCCGTATCACACTGAGGCATGTCCTGGGCACCAGAGCGCTGCAGGTCATCACCAACCTGAACCTTCCCAATTTCATCATTCGCTACCTCTCATACCTaCTGTCAGCAGGAAGCTTCCAGAGCCTCATTTTACGACAGTACAATGCTACAGTAGCGCTGAGTTCCAGCAGACGACCAGAGCGAGAGAGGAgtagagacagagggaggaatAGAAATGGAACAAGAGCAACGTCAGCGTGTTGA

Function

symbol description
asb13a.2 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human ASB13 (ankyrin repeat and SOCS box containing 13).

NR:

description
PREDICTED: ankyrin repeat and SOCS box protein 13-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923453.2 True 1276 mRNA 0.51 7 9559911 9593266

Neighbor

gene id symbol gene type direction distance location
mkln1 mkln1,LOC107754054,LOC107655615,LOC107560731,LOC107757245,LOC107587826 coding downstream 136643 9392029 ~ 9423268 (-)
LOC113531956 LOC108279597,LOC108279598 coding downstream 200861 9350878 ~ 9359050 (-)
LOC113532331 LOC108279597,LOC108279598,LOC105020203,LOC105912087 coding downstream 212865 9338768 ~ 9347046 (-)
parietopsin LOC108279599 coding downstream 268502 9289095 ~ 9291409 (-)
tspan12 tspan12,LOC107592202,LOC107656244,LOC107565667,LOC107658802 coding downstream 370976 9167589 ~ 9188935 (-)
asb13a.1 LOC108279822,LOC108436003 coding upstream 1192 9594458 ~ 9600035 (-)
gdi2 gdi2,LOC108279819,LOC108436005,LOC107754057,LOC107560733,LOC107694307 coding upstream 7311 9600577 ~ 9615300 (-)
ankrd16 ankrd16 coding upstream 24142 9617408 ~ 9623595 (-)
trnay-gua_2 NA coding upstream 29267 9622533 ~ 9622619 (-)
pcloa pclo,pcloa coding upstream 36065 9629331 ~ 9698196 (-)
G279641 NA non-coding downstream 26490 9533222 ~ 9533421 (-)
G279625 NA non-coding downstream 39833 9519833 ~ 9520078 (-)
G279624 net1 non-coding downstream 40184 9517986 ~ 9519727 (-)
G279621 NA non-coding downstream 74142 9485067 ~ 9485769 (-)
G279620 NA non-coding downstream 74963 9484093 ~ 9484948 (-)
G279728 NA non-coding upstream 31333 9624599 ~ 9625119 (-)
G279730 NA non-coding upstream 34071 9627337 ~ 9629153 (-)
G279832 NA non-coding upstream 210912 9804178 ~ 9804403 (-)
G279967 NA non-coding upstream 354065 9947331 ~ 9947536 (-)
G280002 NA non-coding upstream 411075 10004341 ~ 10004812 (-)
G279415 NA other downstream 351348 9207351 ~ 9208563 (-)
G278912 NA other downstream 1340231 8218561 ~ 8219680 (-)
G278634 NA other downstream 1491834 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 1589340 7966819 ~ 7970571 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 2059832 7421988 ~ 7500079 (-)
cracr2ab LOC108280118 other upstream 285215 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 662706 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 1401839 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 1485902 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 1645669 11238935 ~ 11259412 (-)

Expression


Co-expression Network