ninj2 (ninj2,LOC108279754,LOC108428107,LOC103036097,LOC107581271,LOC107743858,LOC107656339,LOC107725989)


Basic Information

Item Value
gene id ninj2
gene name ninj2,LOC108279754,LOC108428107,LOC103036097,LOC107581271,LOC107743858,LOC107656339,LOC107725989
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 7248866 ~ 7290391 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923454.2
ACTCTCAGATGAACCATGGACAACCAACCATCCTTTTCATCTCACATCACCAAACTGACTCACTCATGCAGAAAAGACAGAAGCGTTCGAAGGACGAAGGAAGCCCGACTCTCATCATCAGCCATGTCAGCAGCGAGGGAACGAGCAGATCTGCAGCGTCTCAACATGAATCACTATGCCACTAAGAAGACGGTGGCTGAAAGCATGCTGGATGTGGCTCTGCTTATGGCCAACGCTTCTCAGCTGAAAGCCGTGCTGGAACAAGGGCCTGAGTTTAAGTACTACCTGACCGTGATTGTGCTCATCGCAGTCTCGCTCTTCTTCCAAGTGCTCGCTGGGGCTTTCTTCATTCTCATGGCACGTAAAGATCTCAATATCGTCGCCAATCAGAAAAAGCTGGACGTAATGAATAACTTAGCGACTGCACTAGTGTTCTTCACCGTCATCATCAACATCTTCATCACCGCATTCGGCGTGCAGAAGACCGGTCTCTACCCCCAGCAGTGAACTTTAATGGAAGATAACAGATTGAATACCTGACATTAcagattaatatttatttctgttagtaaaaataatgcaaatgtaCTGTATTACAGCATAACAAacagtatattgtgtgtgttgtttggtTTCAGGACATCAGTGAATCCTGGAAGCCTGCACtggacatttaaaataataataaataataataataataataataataataataataataataataaaacactttattatgCTATGTACAGTACTATTTACCTTTgccatattttaatgttataaataatctATCTTCGATTTTTAACATCA
>XM_026923455.2
ACACATTCAAGAAATGCTGTGGATTATCTATTACACAAATACCAGAGACATGGAGGAGGCGAGTCTGATCAAAAAGACAGAAGCGTTCGAAGGACGAAGGAAGCCCGACTCTCATCATCAGCCATGTCAGCAGCGAGGGAACGAGCAGATCTGCAGCGTCTCAACATGAATCACTATGCCACTAAGAAGACGGTGGCTGAAAGCATGCTGGATGTGGCTCTGCTTATGGCCAACGCTTCTCAGCTGAAAGCCGTGCTGGAACAAGGGCCTGAGTTTAAGTACTACCTGACCGTGATTGTGCTCATCGCAGTCTCGCTCTTCTTCCAAGTGCTCGCTGGGGCTTTCTTCATTCTCATGGCACGTAAAGATCTCAATATCGTCGCCAATCAGAAAAAGCTGGACGTAATGAATAACTTAGCGACTGCACTAGTGTTCTTCACCGTCATCATCAACATCTTCATCACCGCATTCGGCGTGCAGAAGACCGGTCTCTACCCCCAGCAGTGAACTTTAATGGAAGATAACAGATTGAATACCTGACATTAcagattaatatttatttctgttagtaaaaataatgcaaatgtaCTGTATTACAGCATAACAAacagtatattgtgtgtgttgtttggtTTCAGGACATCAGTGAATCCTGGAAGCCTGCACtggacatttaaaataataataaataataataataataataataataataataataataataataaaacactttattatgCTATGTACAGTACTATTTACCTTTgccatattttaatgttataaataatctATCTTCGATTTTTAACATCA
>XM_026923457.2
CTCCTGTGGTGTTTATTTTATGGGggagaagggaaaaaagggTCCAGCAACGTGGCGCGTGTGGTGTTTGGAAATGTGCCTAGTTCTTGTTTCACTAGAGTGTGATTTACAGCTCAGCGTCTCAACATGAATCACTATGCCACTAAGAAGACGGTGGCTGAAAGCATGCTGGATGTGGCTCTGCTTATGGCCAACGCTTCTCAGCTGAAAGCCGTGCTGGAACAAGGGCCTGAGTTTAAGTACTACCTGACCGTGATTGTGCTCATCGCAGTCTCGCTCTTCTTCCAAGTGCTCGCTGGGGCTTTCTTCATTCTCATGGCACGTAAAGATCTCAATATCGTCGCCAATCAGAAAAAGCTGGACGTAATGAATAACTTAGCGACTGCACTAGTGTTCTTCACCGTCATCATCAACATCTTCATCACCGCATTCGGCGTGCAGAAGACCGGTCTCTACCCCCAGCAGTGAACTTTAATGGAAGATAACAGATTGAATACCTGACATTAcagattaatatttatttctgttagtaaaaataatgcaaatgtaCTGTATTACAGCATAACAAacagtatattgtgtgtgttgtttggtTTCAGGACATCAGTGAATCCTGGAAGCCTGCACtggacatttaaaataataataaataataataataataataataataataataataataataataaaacactttattatgCTATGTACAGTACTATTTACCTTTgccatattttaatgttataaataatctATCTTCGATTTTTAACATCACTTTAAGCGTttgaattttcatttatttattcattcatttattttcaactaAACAGCAAAGCTGTGGCCTAAACTCATTTTGCTCCACATCTTGCCAGTATTCTTGGTTTAAACATTCCAGCACTGAAATCTATTCAGACAAGTTTATGATTCAGGTTTAGTGTAATGTCATTGTTAACTTtatactgaaaacaaaacaaaaaatatggttcattttttttgtaagtttcaTAAAATCAAAGTAAGTCACACTCCACTGTATTATTAGATAAAGTGGCGTGATATTATGTGATAAAACATTTGATAAGGTGCTAATATGATACAAACAATAGACACAAAATCTGCTCATGAAacatttctcagtaaaatggaatgaaaactaaaatgatatgaaaagatttttctgtgtgtgtaagtgtgtgtgcatgtgtatctgtatgtgtttctacaactaaaattattttacaatttataataCTTGATTCAGTCAGGATGTTTGCCGCTGTAAGACTATAAAGCCATGTGATATTGCAGAATTAAAGCTAAACAACTAAATCA

Function

symbol description
ninj2 Predicted to be involved in cell adhesion. Predicted to act upstream of or within tissue regeneration. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NINJ2 (ninjurin 2).

NR:

description
PREDICTED: ninjurin-2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923454.2 False 816 mRNA 0.40 4 7249424 7286960
XM_026923455.2 False 816 mRNA 0.40 4 7249424 7290391
XM_026923457.2 True 1335 mRNA 0.35 3 7248866 7254644

Neighbor

gene id symbol gene type direction distance location
erc1b LOC108279753,LOC108442871 coding downstream 4396 7043417 ~ 7244470 (-)
wnt5b wnt5b,LOC108279752,LOC107656325,LOC107726030,LOC107572035,LOC107658849 coding downstream 213838 6926768 ~ 7035028 (-)
adipor2 adipor2 coding downstream 329177 6879529 ~ 6919689 (-)
nudt5 nudt5,LOC107658859,LOC107656337,LOC107726016,LOC107743836 coding downstream 379253 6863931 ~ 6869613 (-)
tspan33a tspan33,tspan33a,LOC107725621,LOC107676927 coding downstream 386839 6845898 ~ 6862027 (-)
optn optn coding upstream 100824 7391215 ~ 7403507 (-)
LOC113531701 NA coding upstream 219697 7510088 ~ 7527943 (-)
ttll12 ttll12,LOC107581273 coding upstream 249533 7539924 ~ 7560116 (-)
pnpla3 LOC108279447,LOC108428138 coding upstream 269758 7560149 ~ 7592040 (-)
trnal-aag_11 NA coding upstream 303336 7593727 ~ 7593808 (-)
G278275 NA non-coding downstream 19426 7229005 ~ 7229440 (-)
G278265 NA non-coding downstream 174281 7071746 ~ 7074585 (-)
G278225 NA non-coding downstream 369925 6877752 ~ 6878941 (-)
G277881 NA non-coding downstream 457391 6791262 ~ 6791475 (-)
G277878 NA non-coding downstream 461395 6783659 ~ 6787471 (-)
LOC117599447 NA non-coding upstream 123957 7414348 ~ 7416071 (-)
G278312 NA non-coding upstream 205181 7495572 ~ 7496263 (-)
LOC117599592 NA non-coding upstream 240393 7530784 ~ 7534282 (-)
G278520 NA non-coding upstream 506444 7796835 ~ 7879017 (-)
G278911 NA non-coding upstream 926622 8217013 ~ 8217293 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other downstream 1243737 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other downstream 1264302 5982292 ~ 5984564 (-)
tmpoa LOC108279628 other downstream 2264551 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 2509867 4734931 ~ 4738999 (-)
LOC117599578 LOC108279645 other downstream 2766301 4466061 ~ 4482565 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 131597 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 676428 7966819 ~ 7970571 (-)
G278634 NA other upstream 762697 8053088 ~ 8068077 (-)
G278912 NA other upstream 928170 8218561 ~ 8219680 (-)
G279415 NA other upstream 1916960 9207351 ~ 9208563 (-)

Expression


Co-expression Network