depdc4 (depdc4,LOC108427048)


Basic Information

Item Value
gene id depdc4
gene name depdc4,LOC108427048
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 13304454 ~ 13310263 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923473.2
TGTTCTCAGACCAGCGTTTCACAGCCTTCTGTCTTTTTGCCCGGGTCCACGTACCCACtacgtcacttcctgtttgacgATGATGGCGGTCGATTTGACTCCGAGGTTTAGAAGGCTGAATAGTCAAACGAGATGTTTTAACGAAAAGAAACATCCAACAGGACCGTTTAGAGCGACACAGCTGTGGCGTAACATCATAGAGGCCTTACAGACGCAGGTGGAGGTCAGGCGTCGTCGGCAGCACTTGCGAGTACACAGAGACTGCTTCACTGGCTCTGATGCTGTTGATGTGGTTCTCAGCCACCTCATGCAGAACATCTATTTCTGCACCAGTGACGTGACCCGCCTCAAAGCTGTCAGGCTTTGCCAGGCCCTCATGGATGCCCGAGTGTTCGAACCTGTTGGTGTGAAGCTCTTTCGCAGGGAAAAAGAGCTGGTCTTTGAGGACTCTGGCTGTAGTCTGTATCACTTTCTGGATTCTGAAGGCCTTCCTGGATCAGCCAAGTGCACTGGTGATATGGAGAATGAAACACCcatgaaagaaaatggaaagaagaagaaagggtcCAGGTTTGATGACTTAAAGACCATCTCCAACCCCTTGGCCCTGGGATCCTCAGACAGAAGGGTGGAGAGAATACTGAAAACCATTAACCTCCAGCCGTCGATGCCTTCTGGCCTGAATCGTGTTGGTTTATCTACTACCTACCTCTCAAAGCAAGTGGTACAGGAAGTGTGGAAACAACAAACCCTTCTCCAGCTGTTGCAGTTAGTGGAGGTGGCTGTGTTGGACTGCGTCCTGACATCACCCTCAAAACCTGCTCCTCTTCGCATGCGTTTGCTGAAGAACCATGACCTGGTCATCTCCAACACCTGTGTGGACCGAGAGGTGTCCCAGGTCCTCAACCTGCCAGAACTGGACTCGTGGCTGATGGCGGCTGCAGACTGTCTGGAGCTGTTTCCAGATGAGGTGATAGTGGCGACGGGAGAGCAGCTGCTTCAGGTCCATGCTGCGGACGGTGACGAGAAGCTGGGCGCCTACAAGAAACTATTATTCGACACAATAGCAAAGTACTACAACAATCAGGAGAGAGTTCCCCTGCTGGCTGGACGCTACATGGACATCCATACAGGCATCCTTAAGCTACTGGactcaGGTAGGGCTGAGGATGCTCTAAAGGCATCTCAGCTGTGTCTGCGACTTCTGGACGCCAGCTCCAGAAACGAGCTGCGCAGACTCCTGGCCTTCATGGCTGAAGCTGCAGACCCCAAGGCCTTCCAGCTTCACAAAACGATGGAGAACAGGGCCCTGATCAGCAGGACGTTCATGAAGGCTGTGCTTCAGAGTAAAGATATGTCTCGTGCCCAGTGTGAGCAGCTCCTGCTGTTTCTCATGGACCACCATTTACATCTGTTCAAGACACCGGTGTCTCTCACCGAGGCGGTGACGAAGGCCCTGCAAACCTTGCAGCAAGGGCGCGATCTGGATAATGTAGCACTGTTCACGTTCTGTCAGCAGATGTCGACACAGCAGTTTGAGGAACAGCGAGAGAAGAGCACATTCGAGAGCCTCAAACAGCTCATTGTACATATTACGCTTAGTAatgagctgtcaatcaaacagaGGAGGAAGCTCATTAAGGAGTTTCAGAAGCACCACCCAGCAGTGTTTCTCCACCATTTCTCCTCCACCTTTTAGAACATGCTGCATAGTTTCTCCAAGGAAGGCTCTTTTCATTTACTTGGTAGAAACATAGCCATAAGATGTTTATGctttaaacagaaacagatcTATTTTTAGTATGTAAACGTAATTCAGTAGTATAACACTGGCAAATTGTGCCTAAGTATTTGTCCTCCAGCTGCACCGCACACATTGAGTTCTGACAGCGAATAGATATCGCAGAACTACACCTAACTAGATCTCTTAAACAAATCATTCTTAAAACCCGGAACCTTTTACAGTGACGCTGATCTTTGGCAGGTTATCACCTGCTCCAATGGTCACAAAAGGTAATCTGCCCCAATTATGATCGAGAAGATATGGTCCTAAATGTTGCAATACTATTTTTAGATGCCAGCTGTACTAGAAGCAGACTCCTGCAGTTCTTTTTCAGCTCAGAAGaagtacagggtgtcccaaaagtctccatatataggggaaattaacactttctagcaaaatgtcttccaaaatttttcatagttagtttattttatatatattttttctg

Function

symbol description
depdc4 Predicted to be involved in intracellular signal transduction.

NR:

description
PREDICTED: DEP domain-containing protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923473.2 True 2234 mRNA 0.48 9 13304454 13310263

Neighbor

gene id symbol gene type direction distance location
scyl2 scyl2,si:ch211-244b2.1,LOC107755162 coding downstream 175 13276926 ~ 13304279 (-)
tnni1d LOC108280151,LOC108427054,LOC107597014 coding downstream 105529 13188862 ~ 13198925 (-)
LOC113531778 trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107590972,LOC107710683 coding downstream 194240 12962716 ~ 13110214 (-)
prl2 LOC108279639 coding downstream 484748 12809321 ~ 12819706 (-)
nuak1a nuak1,LOC107725508,LOC108439414,LOC107587153 coding downstream 501032 12787882 ~ 12803422 (-)
metap2a metap2,metap2a,LOC107689230,LOC107755160,LOC107597011 coding upstream 15138 13325401 ~ 13338373 (-)
vezt vezt coding upstream 34481 13344744 ~ 13374285 (-)
lamb1b LOC108279853 coding upstream 155939 13466202 ~ 13501821 (-)
acot18 LOC108279984,LOC108261735 coding upstream 198969 13509232 ~ 13522323 (-)
LOC113532074 NA coding upstream 222656 13532919 ~ 13549503 (-)
G281981 NA non-coding downstream 18736 13259152 ~ 13285718 (-)
G281964 NA non-coding downstream 93961 13168675 ~ 13210493 (-)
LOC113532391 NA non-coding downstream 157096 13146282 ~ 13147358 (-)
G281527 NA non-coding downstream 826825 12476264 ~ 12477629 (-)
G281510 LOC108279795,LOC108442313 non-coding downstream 845362 12457563 ~ 12459092 (-)
G282006 NA non-coding upstream 9910 13320173 ~ 13373048 (-)
G282047 NA non-coding upstream 97350 13407613 ~ 13409326 (-)
G282060 NA non-coding upstream 117394 13427657 ~ 13427872 (-)
G282116 rbm17,LOC107755150,LOC107748463 non-coding upstream 248996 13559259 ~ 13563946 (-)
LOC117599591 NA non-coding upstream 261537 13571800 ~ 13575375 (-)
dusp16 dusp16 other downstream 1551541 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 1644127 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 1716430 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 2045042 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 2210278 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 1829662 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 3090658 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 3528272 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 3648249 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 4668500 17978763 ~ 17988280 (-)

Expression


Co-expression Network