tspan11 (tspan11,LOC108279944,LOC107720401,LOC107593980,LOC107560736,LOC107694254,LOC108436010,LOC107690651)


Basic Information

Item Value
gene id tspan11
gene name tspan11,LOC108279944,LOC107720401,LOC107593980,LOC107560736,LOC107694254,LOC108436010,LOC107690651
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9755585 ~ 9854329 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923486.2
TGTTTCCTCCCCGCCCCTCACTGACCCTCCACTCGGACACACTCAGCAAGCAACAAGCtgcactgctcacacacacacacacacacacatcgtgtggaattaaaaaaaaaagagagagaagacatTTTAACACTTGAATCCTCGAGGATTTTCTGCTTCTTGGGAAAGATGGGGAGCATGTATAAGGATGAGCAGGATGACTGGGTGACAGTCTGCCTCAAATACCTTCTCTTTGTCTTCAACTTCCTGTTCTGGATGGGTGGAGGGGTCGTGATGGGGGTGGGGATCTGGACCCTGATTGATAAAGGAGATTACTTGAGCTTGCTGGCCTCCAGCACGTTCGCCGTGTCGGCCTATATCCTCCTGCTGGCTGGTGGCCTGGTCATGGTCACGGGCTTCCTGGGCTGCTGTGCCGTCATCCGCGAGCAGAGGAGCCTCCTTTCTACGTACTTCTCCTGTTTGCTGGTGATATTCCTGATTGAACTTGTTGCTGGAGTTCTAGCATATGTGTATTATCAAAGGTTGAGTGAGGAGCTGAAGCAGCACCTCAGTAAGACAATGATGGAGAACTACGCTCAGCCAGGGAAGGAGGGCATCACTCAGGCCGTGGACCGACTGCAGCAGGACTTTAAGTGCTGTGGAAGCAACAACTCCTACGATTGGCAGCACAGCGTGTATGTCACGTCCCCAGAGGCTGAAAAAAGGGTGGTTCCTGACAGCTGCTGCAAGACCATGACCCATCGCTGTGGCCAGAGAGACCACCCTTCCAACATCTACAAAGTGGAGGGTGGCTGTATTACTAAGCTGGAACAGTTCCTGGCTGACCACCTGCTCATCATCGGCGCTGTGGGGATCGGCGTGGCCTGTCTACAGTTAGCAGGAGCACTGTTGACTGCCTGCTTTATTTATCTGCTTTataaagaagaggaagaagactTCTCTGATGTTTGAATGAACAGTCCCGCTTTTGGCTCCTCAACAGCCAAGTGGGCAGAAGatctGTGGGATGGTGTTTACTTGTTGCTTGCACAGACGGATAAAGCTCGACCCGTACTGACCGATCAGCAGGAGCTTTACGGGTCGCCTCAACTGCTTGCTGCCAGTCCACACA
>XM_026923489.2
GTTTCCTCCCCGCCCCTCACTGACCCTCCACTCGGACACACTCAGCAAGCAACAAGCtgcactgctcacacacacacacacacacacatcgtgtggaattaaaaaaaaaagagagagaagacatTTTAACACTTGAATCCTCGAGGATTTTCTGCTTCTTGGCAGGAAAGATGGGGAGCATGTATAAGGATGAGCAGGATGACTGGGTGACAGTCTGCCTCAAATACCTTCTCTTTGTCTTCAACTTCCTGTTCTGGATGGGTGGAGGGGTCGTGATGGGGGTGGGGATCTGGACCCTGATTGATAAAGGAGATTACTTGAGCTTGCTGGCCTCCAGCACGTTCGCCGTGTCGGCCTATATCCTCCTGCTGGCTGGTGGCCTGGTCATGGTCACGGGCTTCCTGGGCTGCTGTGCCGTCATCCGCGAGCAGAGGAGCCTCCTTTCTACGTACTTCTCCTGTTTGCTGGTGATATTCCTGATTGAACTTGTTGCTGGAGTTCTAGCATATGTGTATTATCAAAGGTTGAGTGAGGAGCTGAAGCAGCACCTCAGTAAGACAATGATGGAGAACTACGCTCAGCCAGGGAAGGAGGGCATCACTCAGGCCGTGGACCGACTGCAGCAGGACTTTAAGTGCTGTGGAAGCAACAACTCCTACGATTGGCAGCACAGCGTGTATGTCACGTCCCCAGAGGCTGAAAAAAGGGTGGTTCCTGACAGCTGCTGCAAGACCATGACCCATCGCTGTGGCCAGAGAGACCACCCTTCCAACATCTACAAAGTGGAGGGTGGCTGTATTACTAAGCTGGAACAGTTCCTGGCTGACCACCTGCTCATCATCGGCGCTGTGGGGATCGGCGTGGCCTGTCTACAGatctGTGGGATGGTGTTTACTTGTTGCTTGCACAGACGGATAAAGCTCGACCCGTACTGACCGATCAGCAGGAGCTTTACGGGTCGCCTCAACTGCTTGCTGCCAGTCCACACACTTGTTTTTTCattcctccttttcttttcctaaactgcatgaatgtgttctCCCTCCAGTATAGTCTTACATGAATATGtcttatttcttcttttaaccttctattaatatattcattcaatcattaatatatttgtttCCAAGGGTCTTGCCTGTGTAATGTGGGATTCCCAGCAAGAATGTAATGTAGTTATCACTGGTATCCctattacacacaataataatttttataatcttcttcaaaaaagaaaaggcagaaatctatttttttcctctgtgagCACTGTGTATGTTTAACTATATCTATAACCAGTTTAAGCTGCTATCTTTATGCAACTAGATGCTATTTTCTTCTTAAGCTTAACGTACAGAAATCATATAAAGGTCATGTGATGCAGTCAAAGGATGCATCGCATGAACTATGAATAATGTGTGTAGTAGTATATGGTCTACTAACACAACGTACGCTGAGAGCCTTGAAAAAAACTACTGAGAAGCTAAAAATAACACAGGGATTTCTGGACTATAGCATACGCTATATGCACCCTATGGTGCCTTGCATAAGAATTCACCCCACGTaaatttttcctcattttgtagTATTACAGTGTGAACCTGGAATCGACTTAATTGGGATGTTTACCAtttaatttacacaatatgtctaacattcaAAAGTGCAAAATGATCTTTCATTCTGACACAaaggttaatttaaaaaaatattcgtggcaaaattgctcaagctctgtcagaATGGATGGAAATGAATTGTGACCATACATTTTTAATCCTTGCCACAGATTCTGTAtcaggtctgggctttgacacATTCAGGTGGTTCTTGTTGAGCCACTCTAGCGCAGCGTTGGCTGTATGTTTAAGGTTGTTGTACAGTTGGAAGGCGAACCTCTGCCCCACTCTGAAGGTGGGCTCCATCCATCCTGCCTTCAgccctgaccagtttcccaaTCCCTGCACTTGGAACAttatgctaccaccaccatgcttcacagtggcaATGGTATTCTTAGTGGCAATGGAAATTCTGCTAAAGATATGATATTACCCCTATTAAGTTCCTTTCATTTAcaggttgtaacactataaaatggGGAAAAGCTCAGGAGTGGTGCAAATATTGTATTTAACAAGTAGCATTCCTAAGACACATATATATTTGGATACATATTTTACAGATCTTATTTTCACTGGGTGCTCTCTTAACATAACTTGTCTGAAACCTGTTCCATGTTTCTTGTTATCTTTCTAATGTCATGTGCCAGCTGTTTGTCAGCTTCTCTgtcagtatatatatttttattatctcGATTTCAGACATCAGGCTCTTAAACCTGAGTACCGATAACTGATGCATTACAGTGCAAGAGTGAACTTTCCATATCTTTTCAAAGAGGCCTTTAACACACAACTGCCTCTGATACTAGAGCTTCTAGGGCTGCAAAAGATTTCGAGGTTTGGAGGCGCTACATACATGAAACCTTCATGAAGTCTCCATCAATTACTGAAGCAAATATGTAccataaaagacaaaataatattttctaccACTGCTTAATGTGGTAACCATAGCAACCGCCATCTCATTGAAGTTCGGTCTCATTGGAAAAATAATGCAATCTTTGCATTTGATTATCAGCAATTGATGTTTTAAGCTACTATTTTTAATTGGGcttatatatttgaatatgcATATCAGTGCACTTGGGTGGATGGTGCAGCAAATAATGTCTGCATGTCAGATGTCTGACCACGCTTCATTTCACtggtttatcatttatttagctaGATACTACAACACTGTATTGTAAAACAATGATGATATCTGTCCAGTATGTCACATATTTGTTGCCTAGATGCCTTTAGACAAATATGTGCCTCTTTCAAAGGACAGCAGATGTACTTCTTAATGCTGATATAGCAATGGCATGTATTATATATAGGTATGCATACTGATCCttgttactgaaaataaaatgtttttgggaTAAA
>XM_034313138.1
TGTTTCCTCCCCGCCCCTCACTGACCCTCCACTCGGACACACTCAGCAAGCAACAAGCtgcactgctcacacacacacacacacacacatcgtgtggaattaaaaaaaaaagagagagaagacatTTTAACACTTGAATCCTCGAGGATTTTCTGCTTCTTGGCAGGAAAGATGGGGAGCATGTATAAGGATGAGCAGGATGACTGGGTGACAGTCTGCCTCAAATACCTTCTCTTTGTCTTCAACTTCCTGTTCTGGATGGGTGGAGGGGTCGTGATGGGGGTGGGGATCTGGACCCTGATTGATAAAGGAGATTACTTGAGCTTGCTGGCCTCCAGCACGTTCGCCGTGTCGGCCTATATCCTCCTGCTGGCTGGTGGCCTGGTCATGGTCACGGGCTTCCTGGGCTGCTGTGCCGTCATCCGCGAGCAGAGGAGCCTCCTTTCTACGTACTTCTCCTGTTTGCTGGTGATATTCCTGATTGAACTTGTTGCTGGAGTTCTAGCATATGTGTATTATCAAAGGTTGAGTGAGGAGCTGAAGCAGCACCTCAGTAAGACAATGATGGAGAACTACGCTCAGCCAGGGAAGGAGGGCATCACTCAGGCCGTGGACCGACTGCAGCAGGACTTTAAGTGCTGTGGAAGCAACAACTCCTACGATTGGCAGCACAGCGTGTATGTCACGTCCCCAGAGGCTGAAAAAAGGGTGGTTCCTGACAGCTGCTGCAAGACCATGACCCATCGCTGTGGCCAGAGAGACCACCCTTCCAACATCTACAAAGTGGAGGGTGGCTGTATTACTAAGCTGGAACAGTTCCTGGCTGACCACCTGCTCATCATCGGCGCTGTGGGGATCGGCGTGGCCTGTCTACAGTTAGCAGGAGCACTGTTGACTGCCTGCTTTATTTATCTGCTTTataaagaagaggaagaagactTCTCTGATGTTTGAATGAACAGTCCCGCTTTTGGCTCCTCAACAGCCAAGTGGGCAGAAGatctGTGGGATGGTGTTTACTTGTTGCTTGCACAGACGGATAAAGCTCGACCCGTACTGACCGATCAGCAGGAGCTTTACGGGTCGCCTCAACTGCTTGCTGCCAGTCCACACA
>XM_034313139.1
TGTTTCCTCCCCGCCCCTCACTGACCCTCCACTCGGACACACTCAGCAAGCAACAAGCtgcactgctcacacacacacacacacacacatcgtgtggaattaaaaaaaaaagagagagaagacatTTTAACACTTGAATCCTCGAGGATTTTCTGCTTCTTGGCAGGAAAGATGGGGAGCATGTATAAGGATGAGCAGGATGACTGGGTGACAGTCTGCCTCAAATACCTTCTCTTTGTCTTCAACTTCCTGTTCTGGATGGGTGGAGGGGTCGTGATGGGGGTGGGGATCTGGACCCTGATTGATAAAGGAGATTACTTGAGCTTGCTGGCCTCCAGCACGTTCGCCGTGTCGGCCTATATCCTCCTGCTGGCTGGTGGCCTGGTCATGGTCACGGGCTTCCTGGGCTGCTGTGCCGTCATCCGCGAGCAGAGGAGCCTCCTTTCTACGTACTTCTCCTGTTTGCTGGTGATATTCCTGATTGAACTTGTTGCTGGAGTTCTAGCATATGTGTATTATCAAAGGTTGAGTGAGGAGCTGAAGCAGCACCTCAGTAAGACAATGATGGAGAACTACGCTCAGCCAGGGAAGGAGGGCATCACTCAGGCCGTGGACCGACTGCAGCAGGACTTTAAGTGCTGTGGAAGCAACAACTCCTACGATTGGCAGCACAGCGTGTATGTCACGTCCCCAGAGGCTGAAAAAAGGGTGGTTCCTGACAGCTGCTGCAAGACCATGACCCATCGCTGTGGCCAGAGAGACCACCCTTCCAACATCTACAAAGTGGAGGGTGGCTGTATTACTAAGCTGGAACAGTTCCTGGCTGACCACCTGCTCATCATCGGCGCTGTGGGGATCGGCGTGGCCTGTCTACAGAGGTCAAGTGCACTGGAGAAATAATTGTGGAAAAACAGGACGAGTAGGCATGCAGGCGATCTTCATAATGTTTCACTTCAGACTTGGACTTATGAGTGGAGATCCTATACTGATGTTAATCTATAGattgtctgtgtatgtgtattttatgtgttatgtgtaatttatgtgtttggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>XM_034313140.1
TGTTTCCTCCCCGCCCCTCACTGACCCTCCACTCGGACACACTCAGCAAGCAACAAGCtgcactgctcacacacacacacacacacacatcgtgtggaattaaaaaaaaaagagagagaagacatTTTAACACTTGAATCCTCGAGGATTTTCTGCTTCTTGGCAGGAAAGATGGGGAGCATGTATAAGGATGAGCAGGATGACTGGGTGACAGTCTGCCTCAAATACCTTCTCTTTGTCTTCAACTTCCTGTTCTGGATGGGTGGAGGGGTCGTGATGGGGGTGGGGATCTGGACCCTGATTGATAAAGGAGATTACTTGAGCTTGCTGGCCTCCAGCACGTTCGCCGTGTCGGCCTATATCCTCCTGCTGGCTGGTGGCCTGGTCATGGTCACGGGCTTCCTGGGCTGCTGTGCCGTCATCCGCGAGCAGAGGAGCCTCCTTTCTACGTACTTCTCCTGTTTGCTGGTGATATTCCTGATTGAACTTGTTGCTGGAGTTCTAGCATATGTGTATTATCAAAGGTTGAGTGAGGAGCTGAAGCAGCACCTCAGTAAGACAATGATGGAGAACTACGCTCAGCCAGGGAAGGAGGGCATCACTCAGGCCGTGGACCGACTGCAGCAGGACTTTAAGTGCTGTGGAAGCAACAACTCCTACGATTGGCAGCACAGCGTGTATGTCACGTCCCCAGAGGCTGAAAAAAGGGTGGTTCCTGACAGCTGCTGCAAGACCATGACCCATCGCTGTGGCCAGAGAGACCACCCTTCCAACATCTACAAAGTGGAGGGTGGCTGTATTACTAAGCTGGAACAGTTCCTGGCTGACCACCTGCTCATCATCGGCGCTGTGGGGATCGGCGTGGCCTGTCTACAGATCCAGTCCAGACTTTAAAATTCTCCAAGTCATC

Function

symbol description
tspan11 Predicted to be involved in cell migration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN11 (tetraspanin 11).

NR:

description
PREDICTED: tetraspanin-11-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17352 TSPAN11; tetraspanin-11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923486.2 False 1111 mRNA 0.52 9 9826057 9854329
XM_026923489.2 True 3002 mRNA 0.42 8 9824044 9854328
XM_034313138.1 False 1114 mRNA 0.52 9 9826057 9854329
XM_034313139.1 False 1083 mRNA 0.50 8 9832095 9854329
XM_034313140.1 False 910 mRNA 0.52 8 9755585 9854329

Neighbor

gene id symbol gene type direction distance location
sema3aa LOC108280003,LOC108436009,LOC103023715,LOC107562295,LOC107757236,LOC107560735,LOC107694310 coding downstream 12907 9707450 ~ 9742678 (-)
pcloa pclo,pcloa coding downstream 57389 9629331 ~ 9698196 (-)
ankrd16 ankrd16 coding downstream 131990 9617408 ~ 9623595 (-)
trnay-gua_2 NA coding downstream 132966 9622533 ~ 9622619 (-)
gdi2 gdi2,LOC108279819,LOC108436005,LOC107754057,LOC107560733,LOC107694307 coding downstream 140285 9600577 ~ 9615300 (-)
ccdc59 ccdc59 coding upstream 40756 9895085 ~ 9897952 (-)
pik3cg pik3cg,LOC107656384,LOC107590535,LOC107658948,LOC107583938,LOC107705338 coding upstream 152869 10007198 ~ 10015790 (-)
lmod2b lmod2,lmod2b,LOC108411152,LOC101068860,LOC103382826 coding upstream 593336 10447665 ~ 10450902 (-)
asb15b LOC108280075 coding upstream 597249 10451578 ~ 10461046 (-)
ptprz1b LOC108280061,LOC108435099 coding upstream 616207 10470536 ~ 10512149 (-)
G279730 NA non-coding downstream 126432 9627337 ~ 9629153 (-)
G279728 NA non-coding downstream 130466 9624599 ~ 9625119 (-)
G279641 NA non-coding downstream 222164 9533222 ~ 9533421 (-)
G279625 NA non-coding downstream 235507 9519833 ~ 9520078 (-)
G279624 net1 non-coding downstream 235858 9517986 ~ 9519727 (-)
G279967 NA non-coding upstream 93002 9947331 ~ 9947536 (-)
G280002 NA non-coding upstream 150012 10004341 ~ 10004812 (-)
G280228 NA non-coding upstream 223757 10078086 ~ 10078356 (-)
G280233 NA non-coding upstream 233520 10087849 ~ 10088120 (-)
G280384 NA non-coding upstream 564589 10418918 ~ 10513153 (-)
G279415 NA other downstream 547022 9207351 ~ 9208563 (-)
G278912 NA other downstream 1535905 8218561 ~ 8219680 (-)
G278634 NA other downstream 1687508 8053088 ~ 8068077 (-)
avpr1ab LOC108279517 other downstream 1785014 7966819 ~ 7970571 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other downstream 2255506 7421988 ~ 7500079 (-)
cracr2ab LOC108280118 other upstream 24152 9878481 ~ 9892386 (-)
LOC113532274 NA other upstream 401643 10255972 ~ 10296198 (-)
si:ch211-51e12.7 LOC108280090 other upstream 1140776 10995105 ~ 11007143 (-)
sobpb LOC108279441 other upstream 1224839 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 1384606 11238935 ~ 11259412 (-)

Expression


Co-expression Network