optn (optn)


Basic Information

Item Value
gene id optn
gene name optn
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 7391215 ~ 7403507 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923502.2
CGCAGAAGTTTCACAGATTTGTCTTACACATGGCTCGGCTATGCTCCAGCTCTCTCGGTGCGCTTATGGGGCTCCGTGATGGCGTGCAGATCTGCAGGTTTGCGTGAGGCGTGAAGCACTGGACCAGTCGTAAGACGCGAGAAACGTCAACACCCGGAAGCGCAGTGAGAAGTGAGAGAAGCTGGAGTAAACAGAAGTGAATCCTGCGCGTTTGCAGTAAGATGGCCTCGGGTTCCCCCATTCTGAATGGGGATTTGTCTCACCCAACTCAGTCTCAGAGCACTGGAGCACCACATGTAGAGGAGACGCTCCAGCAGATGAACATCCTCATCAAGGAGAACCGGGAGCTCAAAGATACACAAACACTCGAACACCCTGACCTTCCATCTGACTTGTGCACAGAAGCCCTGAAACAGACTAATCTGACAATGAAGGAGAGGTTTGAGGGTCTGTCTGCCTGGAAGGAGAAGcagaaggaggagagagggTTCCTGGAGAAGCGACTCGAAGAGGCCAAGCAGAGAATCCAAACTCTGGACAGCGAGAACGAGCTCCTGAAGAAACGTGTGCAGGAGATGGAGAAACAGCATTCTGGTGGAGAGCAGGGTGAAGGTGGTGGTCTGCAGGCCAAGCTGGAGGCGTTAATGAGTCAGATCGTCCGCCTGCAGGCTGAGAAGAGCGACCTGGTAGCCATAAACTCTGAACTGCAGCTGAAGATGAGCCAGACTTCTCCGGAAGATTCCTTCATTGAGATCCGCATTGCAGAGGGTGAGATGAACGTGACCAGAGATTTACCTCCTCAGAAAGACTTTTCAGCATCTAGCACgatTAAATCCGACATGGCTGGGTCTCGGCTGGAATCAGAGGAGCAGACGGTGAGTCAGCTCCTGCAGTCTCTGAGACTCGAGACGCAACAAAAAGAGCAACTGCAACACCAAATACAAGCTGCACAGAAGAGGATTGCAGAATTGGAGCTGAAGGAACCCAACAGTGAGAGTGGAACGCAGACGTCTCTGCCCTGTGTGACCGCTACACAGGAAGCGCAGAGCAAGAGCTCTCAGGAGGAAACAGCCAAAtctgCCTCTGAGGTGGAGAACCTGAAGACTCAGTTAATGAATTTGTTTAAAGAGCTGCAGCAGGCTCAGAGTAAACTGGACCAGGCGGAGAACATGAAGAAGAACTTCCAGGACAGGTGTAAGGAGCTGGAGCAGGACCTGGGCACGCTGAAGACTCAGCTCggggagagagagcagctgcAGGCTGAGAACGACAGACTGAAGGTGCAGCTGGAGAGCATGCAGGCTGCCAACAAACTGGAGCAGAAGAAGGTTCAGGAGGAAAGGAATGATTTGGCGCAGCTGAAGGATGCGTACACCAAGCTGTTTGAGGATTATGAAGAACTTCAGCAAGAGAATAAGAAACGACAGgGAACTGTATCACGGGAGGAGTATGGTGAGCTTCAGTCCAGAATGGTTGCAGCAGAACAAGCTTTAGCAGACAAGCAGCAAAAGATCGACATAATGAAGCAAGAGCTGTGTGAGAAGGACAAAGAGCTGGAGACCATCTCTGTGTTTAAGGCTCAGgCAGAGGTTTATTCCTCAGACTTCTACGCCGAGCGAGCTGCGAGGGAGAAGATTCACGAGGAGAAAGAGCGCCTGGCTGCTCAGCTGGAGTTTTTCAAGAAGCAGAATATCCAGCTACAGGATGAGGTGGAGTCAATGGGCAGGCAGTCTATGAGTGAGATGCAGAGGAGACATGTGCCTCGTGGTGCAAACCCAGGCGATTCTTCTCCACACCATCACCTGCAGGGTGGCAGAGttGATTGGCAGCAGCAGGTGAATATTCCTGAGCATGCTTGTCCTAAATGTGGGGAAGTCCTTCCTGATCTGGACACTCTGCAAATCCACATCATGGACTGCATCATCTGAGCATTAAGTCTTCACCTGAGTGACATGAAGAACAGGACAGCAGGATCTGAAAATGCATTTACTATACAAATCCCTGCACTCATATTTAACATAATCTCCATAGAGAACTTCATTCAATTTATTCTCTAATTGCTCTGCAGATCTAATTACTCACCATTCTTAAATACGTAACAGAAATGGCCGAGGGCATGGAAGAAGTGATCTATATAGCCTGTGGTAAGATGTTTTGACTTAAATGATCATGAGGTGAATGAAGCTAAAAGAATGCTACAGCCGGAACAGGAGGCTGGAAATGAATATGGACTGTTGAATAAAGAGTAGGatctatatttttgtttatatagtataatataatatatatagagagagagaaataaaaattaagataGGAAAGGTTTAAGTTCTTGctttgatttatatttagattatattttattttggagaAGATACtttgtgttaaaatatatttaccttcattagaatgggggaaaaaaacccacagggAGTGTATTAAGAAACCTGTATGAGCCAG
>XM_026923503.2
GAAGTTTCACAGATTTGTCTTACACATGGCTCGGCTATGCTCCAGCTCTCTCGGTGCGCTTATGGGGCTCCGTGATGGCGTGCAGATCTGCAGGTTTGCGTGAGGCGTGAAGCACTGGACCAGTCGTAAGACGCGAGAAACGTCAACACCCGGAAGCGCAGTGAGAAGTGAGAGAAGCTGGAGTAAACAGAAGTGAATCCTGCGCGTTTGCAGTAAGATGGCCTCGGGTTCCCCCATTCTGAATGGGGATTTGTCTCACCCAACTCAGTCTCAGAGCACTGGAGCACCACATGTAGAGGAGACGCTCCAGCAGATGAACATCCTCATCAAGGAGAACCGGGAGCTCAAAGAAGCCCTGAAACAGACTAATCTGACAATGAAGGAGAGGTTTGAGGGTCTGTCTGCCTGGAAGGAGAAGcagaaggaggagagagggTTCCTGGAGAAGCGACTCGAAGAGGCCAAGCAGAGAATCCAAACTCTGGACAGCGAGAACGAGCTCCTGAAGAAACGTGTGCAGGAGATGGAGAAACAGCATTCTGGTGGAGAGCAGGGTGAAGGTGGTGGTCTGCAGGCCAAGCTGGAGGCGTTAATGAGTCAGATCGTCCGCCTGCAGGCTGAGAAGAGCGACCTGGTAGCCATAAACTCTGAACTGCAGCTGAAGATGAGCCAGACTTCTCCGGAAGATTCCTTCATTGAGATCCGCATTGCAGAGGGTGAGATGAACGTGACCAGAGATTTACCTCCTCAGAAAGACTTTTCAGCATCTAGCACgatTAAATCCGACATGGCTGGGTCTCGGCTGGAATCAGAGGAGCAGACGGTGAGTCAGCTCCTGCAGTCTCTGAGACTCGAGACGCAACAAAAAGAGCAACTGCAACACCAAATACAAGCTGCACAGAAGAGGATTGCAGAATTGGAGCTGAAGGAACCCAACAGTGAGAGTGGAACGCAGACGTCTCTGCCCTGTGTGACCGCTACACAGGAAGCGCAGAGCAAGAGCTCTCAGGAGGAAACAGCCAAAtctgCCTCTGAGGTGGAGAACCTGAAGACTCAGTTAATGAATTTGTTTAAAGAGCTGCAGCAGGCTCAGAGTAAACTGGACCAGGCGGAGAACATGAAGAAGAACTTCCAGGACAGGTGTAAGGAGCTGGAGCAGGACCTGGGCACGCTGAAGACTCAGCTCggggagagagagcagctgcAGGCTGAGAACGACAGACTGAAGGTGCAGCTGGAGAGCATGCAGGCTGCCAACAAACTGGAGCAGAAGAAGGTTCAGGAGGAAAGGAATGATTTGGCGCAGCTGAAGGATGCGTACACCAAGCTGTTTGAGGATTATGAAGAACTTCAGCAAGAGAATAAGAAACGACAGgGAACTGTATCACGGGAGGAGTATGGTGAGCTTCAGTCCAGAATGGTTGCAGCAGAACAAGCTTTAGCAGACAAGCAGCAAAAGATCGACATAATGAAGCAAGAGCTGTGTGAGAAGGACAAAGAGCTGGAGACCATCTCTGTGTTTAAGGCTCAGgCAGAGGTTTATTCCTCAGACTTCTACGCCGAGCGAGCTGCGAGGGAGAAGATTCACGAGGAGAAAGAGCGCCTGGCTGCTCAGCTGGAGTTTTTCAAGAAGCAGAATATCCAGCTACAGGATGAGGTGGAGTCAATGGGCAGGCAGTCTATGAGTGAGATGCAGAGGAGACATGTGCCTCGTGGTGCAAACCCAGGCGATTCTTCTCCACACCATCACCTGCAGGGTGGCAGAGttGATTGGCAGCAGCAGGTGAATATTCCTGAGCATGCTTGTCCTAAATGTGGGGAAGTCCTTCCTGATCTGGACACTCTGCAAATCCACATCATGGACTGCATCATCTGAGCATTAAGTCTTCACCTGAGTGACATGAAGAACAGGACAGCAGGATCTGAAAATGCATTTACTATACAAATCCCTGCACTCATATTTAACATAATCTCCATAGA

Function

symbol description
optn Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity. Acts upstream of or within axonogenesis; defense response to bacterium; and vesicle localization. Predicted to be located in autophagosome; perinuclear region of cytoplasm; and recycling endosome. Predicted to be active in Golgi apparatus and nucleus. Is expressed in several structures, including eye; otic vesicle; periocular mesenchyme; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Paget's disease of bone; amyotrophic lateral sclerosis (multiple); and glaucoma (multiple). Orthologous to human OPTN (optineurin).

NR:

description
PREDICTED: optineurin

GO:

id name namespace
GO:0007409 axonogenesis biological_process

KEGG:

id description
K19946 OPTN, FIP2; optineurin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923502.2 True 2460 mRNA 0.48 14 7391215 7403507
XM_026923503.2 False 1980 mRNA 0.51 14 7391643 7403503

Neighbor

gene id symbol gene type direction distance location
ninj2 ninj2,LOC108279754,LOC108428107,LOC103036097,LOC107581271,LOC107743858,LOC107656339,LOC107725989 coding downstream 100824 7248866 ~ 7290391 (-)
erc1b LOC108279753,LOC108442871 coding downstream 146745 7043417 ~ 7244470 (-)
wnt5b wnt5b,LOC108279752,LOC107656325,LOC107726030,LOC107572035,LOC107658849 coding downstream 356187 6926768 ~ 7035028 (-)
adipor2 adipor2 coding downstream 471526 6879529 ~ 6919689 (-)
nudt5 nudt5,LOC107658859,LOC107656337,LOC107726016,LOC107743836 coding downstream 521602 6863931 ~ 6869613 (-)
LOC113531701 NA coding upstream 106581 7510088 ~ 7527943 (-)
ttll12 ttll12,LOC107581273 coding upstream 136417 7539924 ~ 7560116 (-)
pnpla3 LOC108279447,LOC108428138 coding upstream 156642 7560149 ~ 7592040 (-)
trnal-aag_11 NA coding upstream 190220 7593727 ~ 7593808 (-)
mpped1 mpped1,LOC107726058,LOC107658834,LOC107592234,LOC107656320 coding upstream 239940 7643447 ~ 7690136 (-)
G278275 NA non-coding downstream 161775 7229005 ~ 7229440 (-)
G278265 NA non-coding downstream 316630 7071746 ~ 7074585 (-)
G278225 NA non-coding downstream 512274 6877752 ~ 6878941 (-)
G277881 NA non-coding downstream 599740 6791262 ~ 6791475 (-)
G277878 NA non-coding downstream 603744 6783659 ~ 6787471 (-)
LOC117599447 NA non-coding upstream 10841 7414348 ~ 7416071 (-)
G278312 NA non-coding upstream 92065 7495572 ~ 7496263 (-)
LOC117599592 NA non-coding upstream 127277 7530784 ~ 7534282 (-)
G278520 NA non-coding upstream 393328 7796835 ~ 7879017 (-)
G278911 NA non-coding upstream 813506 8217013 ~ 8217293 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other downstream 1386086 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other downstream 1406651 5982292 ~ 5984564 (-)
tmpoa LOC108279628 other downstream 2406900 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 2652216 4734931 ~ 4738999 (-)
LOC117599578 LOC108279645 other downstream 2908650 4466061 ~ 4482565 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 18481 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 563312 7966819 ~ 7970571 (-)
G278634 NA other upstream 649581 8053088 ~ 8068077 (-)
G278912 NA other upstream 815054 8218561 ~ 8219680 (-)
G279415 NA other upstream 1803844 9207351 ~ 9208563 (-)

Expression


Co-expression Network