bcat1 (bcat1,LOC107725514,LOC107659834,LOC107587341)


Basic Information

Item Value
gene id bcat1
gene name bcat1,LOC107725514,LOC107659834,LOC107587341
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5339773 ~ 5361979 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923526.2
gtgtaattgttcacatatgaagggaaaaaatgcaggctattaaaaaaaaggggaggAAACGCGAATAAATGTGAAGGAAATGCATGAAGCCTGCTTTCTGCTTGCTTGTTGTGCATGCACAGCTTGGCTCACAGGGCATTTAGAGCTCGCGTGAGGCAGCGGAGAGGGTGTATAGTGTAGTcatagtgtggtgtagtgtgtagtgtaatcAGTCCGAGCTCGCGCCTCCATTTGCGCACCTCCATCATGGCGAGCGGTTCAGCGAGCGCGCGAGCTCCTCAGgtCCAAGACGAAAATCCCTCATGTAATGATGTGGCTAGCTTTAAGGCTGCAGACATAGTGGTCCAGTTGTGTGAGAACCGCAAACCTAAACCTGAGTCAGAGAACCTGCCCTTCGGCACCGTGTTCACAGACCACATGCTGCTGATCGAGTGGAGCAGAGAAGGGGGCTGGGAAAAACCTCGGATTCAGCCATTTGGAAACCTGAGCCTTCATCCCGCCTGCGCCGCCCTGCATTACGGCGTGCAGCTGTTCGAGGGCATGAAGGCGTACCGGGGCCAGGATGACCGAGTTCGTCTCTTCAGGCCCATGCTGAACATGAAGCGCATGTTAAAGTCTGCACACAGAGCCTGTCTACCCAGTTTCGATGCCGCTGAGTTGCTGGAGTGTATCAGGAAACTGGTGGAAGTGGATCAGGACTGGGTTCCTCACTCGGAATCAGCGAGTCTCTATATCCGCCCGGCGTTCCTGGGCACAGAGTCTAAATTAGGTGTGATGGTTTCCTCCCATGCCTTACTGTTTGTGGTCCTCAGTCCTGTTGGCTTCTACTTCAGCACAGGAAACAATTCTGTGTCTCTGTGGGCCGACTCCAAATATATCAGGGCCTGGAAAGGAGGGACGGGAGACTGCAAAATGGGAGGGAACTATGGTGCTTCTATCGTGGCTCAGTGTGAGGCCATGAAATTCGGCTGTCAGCAGGTGCTGTGGCTGTACGGAGACGATCACCAGATCACCGAGGTCGGCACAATGAACCTCTTTCTCTACTGGATCAACGAGGAAGGAGaggaAGAGCTCGCGACACCTCCTCTGGACGGGATCATTTTGCCCGGCATCACACGCCAAAGCATCCTGGAGCTGGCACGCAAATGGggcGAGTTTAAAGTGTCGGAGCGTTACCTGACCATGGCGGAGCTGCGGCTGGCTGTGGAGCAGAAGCGTGTGAGGGAGATGTTCGGCTCGGGGACGGCGTGTGTGGTCAGTCGTGTGGGCAGAGTGCTGTATCAGGGAGAGAATCTGCAGATCCCGTGTGGTGATGAGAGCAATTCACTCGTCTCTCGACTGCTGAAGGAGCTAACCGACATCCAgTATGGACGGACTGAGAGTGACTGGACCTTCCTCGTGTAGATGAGCATTGACTCAccatgtgtgtgaatgcacaAACGTAAACGCGtgtgaatacacacacgcatctTGGTTCTAGGGAGAATCTCAGTAGTTTTTTACTATTCCGCAAtaattgtactgtatgtgtttccCGTCCTTACTGTAATGTAAAGTATTTGCAGTACTGTGGACCTACATGTACACGGATGATGTCACACCATCCAGCACATCCATTAACATGCATTAAACACACAACGTTCAACCAGCatacagttttacacacacacacacacacacacatacacacacacacacatacacacacacacaccagcttgTCAGTGATTATCTTAAATTGGATATGGTAATTCAGTATAGTGCAACAGATTTAAGACTTAAGGCCGATTCACACTGGATGCGTCACGTGAAGCGTCATGTCAAGACCTCGTTCAgttccattttaaaaagcatttcagttcCCACCGGCCAGAGGCGCGTCAAACTCTGGCTTGCGTGCTGTACTGCCCTTGTTTTATGCGATACGTCTCAATTTCTTCACTTGCTCACGTGAGTGAAGCATGAATTCCATAGAAACCCATTAAAATCACCAGCcaggttttaaaccaataaaacgGTTAACCTTAAGCATTTGTTATGTCTGGGGAATACCTTCATGTTTGTCCATCATGTCGCTTATTGTTAATAGAATACATTGTGTGGTGGAAGAATTGTTTATtgacaatattattaataatgcacAGTCGACATTTTGTTTAAGCAATAATCCATTCAAGGGTTTGTGTGTTACAGCGATTTTATTATGGCTTACTGGcatattgaattattttacaccaaaatggggaaacaaaataaacactaatacaTCGGTTGTTTACTGTCCCACTGTCTCAggtcatatttttttatgtgaacgGTTTTATAATTCCAGGTTGTAGATCGCTACAGGCAAAATACGCTTATTAATGAAAGCTCAAGAACAAACGAGACTTCGCAATGTGAGTGTTTCTTTCGTTTTTTTGGCACTTTACGTTCAAGTCTGTTAGAAAACGAAAGAGTTCTCTCGGCTTGGCTGAGAGGGGGGCGTGGCTGAGAGGAGGCATGACTGAGGGGGCGTGGTTGAGAGGGGGCACGGCTGAGGGGGCGTGGTTAAGAGGGTGTGGCTAAGAGAGGGGTGTGATTGTCAGCAGGGGATTCCAGTAGCTTTCAAACCAAGATTATTCTGTTAATTAGTAAATTAGTATTTGGTAATTAAACAGTTTCAAAATGGCCGAAAATGTAAATTCTCAGAGTCATAACTGCTAATCAGATGCTGGAGTTGTCAAAATTTGTACAGAAACAGAGCTGAGACATGTCTGGTTTGGATTGACTGAGGTCTTGACGTGTCAGTTACATGAAGCAACCGGTGTAAATCTGTGTTTACAAtgaagtgcaaaagtttgcacgcCCTTAGGGCAAAAGAACTAATATTCCTTCATTGTCACAAGCAATCAGAAAGtttaaatgatattaataatgaagaaatgaaaaatattaatagaGATGCCTTCCAGTACCGAATAAgtgttgagtgcaaaagtttgcacacccttatgACAAATGAACAGATGTTACTTCATAAGCACATGTAAGAAAATGGTCAAATGATTTGGTATGAtagtaatagaaaaaaatgaattcaatgTGATACAAATGTACTAGTAGGCACAAGTAACAAAATGGTCAGATGTTGTGTTATATTAGTGgtggaaaaaaattgtttgcacctgtcattttaaatgttacagacgTATACCAGATTTGTGATGATTATGtgcaataaaagaaaataacatcCTGTGGTTTGCGCACCCTTAGGACAAAGGAAAAAGATGTTCCTTCATTTTCACGAGCAACAAAAATAGGCCAAAGATAAtagtgaagaaataaaaaagaaagtaccATCAAGTACTAAAATACAGCAAAGTAAAGTTTTCCTCTTTTGTATCTTCTCAGTTAAAAGATTCGGTCTGACTGGAGCACTGAGAGTGTCGTGACTGAACTTGGATTGTTGCACGATGCACATATCTTCCATATGGATCAATTAGCAGTTCAGTGTTTATGTAGATAAAGTTGTATAGTAGAAAAGTTGTGAAGTTGTGAAAAATTTTCACATTTCCATTCTGAAACCAAGGGGGACAACTCAATGCCAACTCATTCAAATCCTTGTTGAATATTATGCagtaattattgtactttttaagtgtgatttctttttattatagcAATAATGATTTTATGTGGTGGAAAGtacatttctgtgtttgtgagGAAACACTGTGTGCACTACGGAGGCTGGAGGAAATAATAAAGCACATCTACACACCA

Function

symbol description
bcat1 Predicted to enable branched-chain-amino-acid transaminase activity. Predicted to be involved in leucine biosynthetic process and valine biosynthetic process. Predicted to act upstream of or within branched-chain amino acid biosynthetic process and cellular amino acid biosynthetic process. Predicted to be active in mitochondrion. Is expressed in central nervous system; liver; and neural tube. Orthologous to human BCAT1 (branched chain amino acid transaminase 1).

NR:

description
branched-chain-amino-acid aminotransferase, cytosolic isoform X1

GO:

id name namespace
GO:0009082 branched-chain amino acid biosynthetic process biological_process
GO:0052654 L-leucine transaminase activity molecular_function
GO:0052655 L-valine transaminase activity molecular_function
GO:0052656 L-isoleucine transaminase activity molecular_function

KEGG:

id description
K00826 E2.6.1.42, ilvE; branched-chain amino acid aminotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923526.2 True 3768 mRNA 0.44 11 5339773 5361979

Neighbor

gene id symbol gene type direction distance location
sox5 sox5,LOC107725540,LOC107590035,LOC107587062 coding downstream 23866 5080812 ~ 5315907 (-)
strap strap,LOC107744907,LOC107586834,LOC107725662,LOC107694684 coding downstream 335982 4988481 ~ 5003791 (-)
slc25a3a slc25a3a,slc25a3,LOC108279629,LOC108437945,LOC107732290 coding downstream 374680 4954291 ~ 4965093 (-)
ldhba ldhb,ldhba,LOC107659842,LOC107589975,LOC107725606,LOC107586539,LOC107744904,LOC107694687 coding downstream 400960 4925716 ~ 4938813 (-)
gys2 gys2,LOC107659841,LOC107694689 coding downstream 421993 4897270 ~ 4917780 (-)
casc1 casc1 coding upstream 43495 5405474 ~ 5419057 (-)
parpbp parpbp coding upstream 102334 5464313 ~ 5487007 (-)
th2 LOC108279869,LOC108437952,LOC107695848 coding upstream 152103 5514082 ~ 5528820 (-)
pah pah coding upstream 167177 5529156 ~ 5550953 (-)
LOC113532275 LOC108279443 coding upstream 203698 5565677 ~ 5625699 (-)
LOC117599571 NA non-coding downstream 13059 5315907 ~ 5326714 (-)
G276985 NA non-coding downstream 214295 5124473 ~ 5125478 (-)
G276980 NA non-coding downstream 228805 5106880 ~ 5110968 (-)
LOC113531850 NA non-coding downstream 394495 4943549 ~ 4945278 (-)
G276753 NA non-coding downstream 458765 4880418 ~ 4881008 (-)
G277443 NA non-coding upstream 85172 5447151 ~ 5448687 (-)
G277447 NA non-coding upstream 197955 5559934 ~ 5560322 (-)
G277494 dcn non-coding upstream 296505 5658484 ~ 5727420 (-)
G277506 NA non-coding upstream 299832 5661811 ~ 5663019 (-)
G277508 NA non-coding upstream 307589 5669568 ~ 5670534 (-)
tmpoa LOC108279628 other downstream 355458 4966232 ~ 4984315 (-)
G276650 LOC108279602 other downstream 600774 4734931 ~ 4738999 (-)
G276503 LOC108279645 other downstream 752677 4358625 ~ 4587096 (-)
copg2 copg2,LOC108279806,LOC102787195,LOC107744880,LOC107676915 other upstream 619159 5981138 ~ 6005129 (-)
G277575 copg2,LOC108279806,LOC102787195 other upstream 620313 5982292 ~ 5984564 (-)
camk1da camk1da,LOC108279878,LOC108428135,LOC107743755,LOC107658855,LOC107726013,LOC107656221 other upstream 2060009 7421988 ~ 7500079 (-)
avpr1ab LOC108279517 other upstream 2604840 7966819 ~ 7970571 (-)
G278634 NA other upstream 2691109 8053088 ~ 8068077 (-)

Expression


Co-expression Network