LOC113532240


Basic Information

Item Value
gene id LOC113532240
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12411859 ~ 12415074 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923527.2
ATCTATGACCAAGCAAGTGgaagaaatgtcagaaataaaCCTCCAAATACCGCAGAGCTGCAGACAAAGATAAGCCTGCCAACTGTCGCCTCATTGTGGACAATTTATGGTGGGTGTGTGAGCAGAGAGCTAGCTGTTGATGACTAGCTGTAAAGATTCAGTGGACGGCGGGTGACGGATCTAAGCGGAGGCTGGGAAACAAAGGAGGTAGGCAAAAAGGGAGGAGTAAATGAGAGAGCGGGAGCAGGCAGTAGATAAAGCTGCAGCCAGGACCATGAGCTGCACCCTTGTGACTGCATCTTATGATTCGCTGCCTGCTCAGCTGAGTCCCCATCGTGTAAATGATCAACACTTTGCTCGAAGGCTTTCATCTCCTCACGGTTTGGGAGCCCGCACCTCATCCGTGCCACGTCGTCCTTCAGCTCTGCCTGGATATCCACTTTCTTCCTTCCAGGAGCCAAACAACCtccacaatcatcatcatcatcatcatcagcgtTTCTCCCCGTCACTAGGTTCCAAAGCCTCGCTGGCGCCCCCTGTGCCTCAAGCAGACCCTGCCCCACCATGCTGCCAAGCGGTGGGCATTGTGCCACTGCTACGCCTGGCACTACTCATCTTCAGCTGCCTCTTCTGGGCAGCCGGGTTGGCGGTCTTCACCCTAGGTGTCTGGGCACAAGCATCCCTGGCCGACTACATGCTGCTTTCCTCTAACCACTACCCCAATGCTCCATTGATACTTCTAGCTACAGGGGCTGCTATCACCACCTGGGGTTTCCTGGGTTGCCTGGGTGTGGCAGCCAACTTGCCCTGCCTTCTCCGCACCTATGGCTTCTTCCAGCTGGCTGTGCTAATGGGGGGATTGGCTGCTGGACTTTCAGGACTCTTCTACAGGGAAGACATCGCTGGAGGTTTCCGCAGCGGGCTACAGAAGGCAGTGGAGGGCTACGGAGAAGACGAAGGACGTGCTGACGCTCTGGACAGCCTTCAGAGGGCGCTGAAGTGCTGTGGGGCAGAGGGCTGGCATGACTGGCTCCTGTCTGACTGGGCTGTACAGGATGCTGTTTCACTGACAAGTAGCTCAGGCAATGACACGTATTATGTGTCTGTACCGGACAGTTGTTGCATACGGCGCAAAGGCTGTCATAACAGGCCGCTGCCAGAAGGAGGAACTGGTAGCATTGAAGGTGTGGGGATTCACCCACATGGTTGCTTCAAGAAAGTTTTTAGTTTTGTCAATGATAACGTCTTTcacattgctgctgctgtccTAGCTCTTGCTTTTACCCAGGTGGCGGGTATAATTCTGGCATGCCTGCTCGCCAACCGCCTACCTGCTCAGCCTCATAGGCGAGGCCGCTAAGAAATTCCAGGTCAGTATCAGTTGTTCTATGAAAAGCCCGGTTTAGATGGACTTAGACTGTACTTATAAACAATTTAATCTTAGAGCAAAAGGAATTTTTCAGTAAAGAATGATCATTAATAGTGCTTCTCTGCCAGCGCTTCTCCAACAGTATGGTTCACTATGGTTCATTCAAACCCAGGACTGTCCATACACTGGCCTGTCCTTCCCCATCACATAACCTGGGAAAGTAGTTTCCATTTTCTCTGGAGGTTTTCAAGTGGTGACAGGCacaaaaaacaattttgaaataaaaccaaaatccCAAATGTCTTTGTACACTATACGTGGGGGTACTATGTAGTGTGTTCAGCTCCATTGTTATATCTGATATAGGAAGCAAACcaagtgaataggaagccatcTGGGATTTGTCATAGAAGatgtaaaagaaatgtaaaataaagataatagtGATAAGAAAACATTAGATACATTAAATTGCTATGATGTTGCCAGACTTTTTAAAAGAGTAAGAAAATTTGGTAGACTTTCACTGCTAGCCTTTTTGTGAGTTTAATCACAAACTCACTTTGCCAGAGTTTAACCAATAGAtggtttacattatttttagcTCCTTCTCCTATGTCCTGGCTTAGGTTGCATGGCACCTGGGCAAACTGGTAAAGAATTTCAGCACGGGTATTTAAGTACGGAGCGGCTCGCATGACAGTGGAAATAGCAATTGAGTAATTGTAGGCAATTTGGCAAGCTCTGCCATGCTGCACTATCCTGCAGAAAGATACTATACCATTAAATTTTAAACCAGAGTAAGTGTAAATGGTGTCTAATAAGTGTACAAAACAGTCCCAAGACTGGTATGAGATACAAAGGTGCTTTCAGCATCTGCACAAACAATGGGTTCTGAAACGTTCTCTGAAACCCACTGTTATCTATACTGCATAAGATTTTTGTTATAcaaactgttttatattttgagaaaaattaTGATGTAGCCTACTAAATCAGTGTGTTAAACATTGCCATTTTGTGgattttcatgtaattttattttgtgcatttttaacCATGCATTTTACGAATTCTTCTCAGTTGTATTTGTGGAGTAATATAAGTAGACCacacatattgtatataatagCTGTATGTTGTGTAATATCTGCAAAAGCCCTCAAACATTATGGTGACTATTCCTTCTAAAAAAGGGGGTATAGAGAActactgattttaaaatgttagaggatttatatgtatatttattcattgttgAGTGAAAATTGCCAACATAATATACTCTGCTTTGACttgcagttttaattttaaaaagaacagcTAGAGCTGTAAATCCCTCTGCATTTTATATAACCTTCAGCCCTAGTCTAATTCACTATCAATACTTACTAATGATACTAATAATGCTAGTGATTCTTCTTagctgtgtgtgaatgcattCGTTTGTGGTGAGCTAGATCTCCAGGAGCAGGGTTGACCACCTCCAGGGGCTATTCAGCATATCAAGACAGTCTGCAAAGttctaatatataaaataaaaaatatattatttctatCCTTATCAATTTTCTACAAATACAATGACACAGCTGCAGCTGATCCAACTATTTCTCTGATGGCCACTAACTAAGCACAAATTTTACATAGTGTGGTAAATGAAATCCTGCTGGATTTCGTTTCTTAAGTGGCTGTTCTGATTGACTACGGAGAAGATGAGATCTGCTACTGTGGATGTTTTAAAGCCAGTTAAAATTCTGGAGAGCAGGACTATttcatatattgtatattatatattgtaggGCAGCTGATAAATGAGAAACTGAGGAGTGCTTTGATGTGTT

Function

GO: NA

KEGG:

id description
K06508 CD81, TAPA1, TSPAN28; CD81 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923527.2 True 3216 mRNA 0.43 1 12411859 12415074

Neighbor

gene id symbol gene type direction distance location
LOC113531803 NA coding downstream 2329 12402179 ~ 12409530 (-)
mapk11 mapk11,LOC108279456,LOC103035641,LOC108442323,LOC107725929,LOC107656380,LOC107583972,LOC107579565,LOC105020226,LOC107658913 coding downstream 17338 12375791 ~ 12394521 (-)
mapk12b mapk12b,LOC108279513,LOC108442322,LOC103035956,LOC107579544,LOC107656379,LOC103459704,LOC107710136,LOC103151778 coding downstream 37475 12369609 ~ 12374384 (-)
LOC113532409 NA coding downstream 44313 12363808 ~ 12367546 (-)
zgc:165507 slc16a7,LOC106609446,LOC103152572 coding downstream 139232 12254255 ~ 12272627 (-)
apex1 apex1,LOC107658891 coding upstream 15374 12430448 ~ 12435191 (-)
si:ch211-214j24.10 LOC108279797 coding upstream 30824 12445898 ~ 12451585 (-)
shisal1a LOC108279994,LOC108442307,LOC107725687,LOC107676911,LOC107583751 coding upstream 73321 12488395 ~ 12517683 (-)
cmasa NA coding upstream 154994 12570068 ~ 12579954 (-)
LOC113532438 NA coding upstream 165849 12580923 ~ 12581063 (-)
G281486 NA non-coding downstream 42594 12368959 ~ 12369265 (-)
G281455 NA non-coding downstream 157704 12251314 ~ 12254155 (-)
G281373 NA non-coding downstream 317800 12093857 ~ 12094059 (-)
G281362 NA non-coding downstream 375497 12033096 ~ 12036362 (-)
G281102 lrp6,LOC102306404,LOC101476287 non-coding downstream 700875 11707690 ~ 11710984 (-)
G281510 LOC108279795,LOC108442313 non-coding upstream 42489 12457563 ~ 12459092 (-)
G281527 NA non-coding upstream 61190 12476264 ~ 12477629 (-)
LOC113532391 NA non-coding upstream 731208 13146282 ~ 13147358 (-)
G281964 NA non-coding upstream 753601 13168675 ~ 13210493 (-)
G281981 NA non-coding upstream 844078 13259152 ~ 13285718 (-)
dusp16 dusp16 other downstream 658946 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 751532 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 823835 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 1152447 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 1317683 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 2724851 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 3985847 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 4423461 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 4543438 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 5563689 17978763 ~ 17988280 (-)

Expression


Co-expression Network